Wall clock time and date at job start Tue Mar 31 2020 17:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47227 * 2 1 4 4 N 1.30856 * 126.19479 * 88.20899 * 3 2 1 5 5 C 1.34591 * 107.28955 * 180.02562 * 4 3 2 6 6 C 1.47703 * 126.03314 * 180.02562 * 5 4 3 7 7 O 1.21483 * 119.99569 * 359.97438 * 6 5 4 8 8 O 1.34729 * 120.00639 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00403 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47043 * 29.99799 * 9 8 6 11 11 C 1.53003 * 109.46969 * 269.99984 * 9 8 6 12 12 C 1.50697 * 109.47223 * 150.00213 * 9 8 6 13 13 H 1.07996 * 119.99795 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99901 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00240 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99854 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47031 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46877 * 120.00098 * 16 14 12 19 19 H 1.48497 * 109.47066 * 239.99708 * 16 14 12 20 20 N 1.31625 * 107.94125 * 0.26282 * 5 4 3 21 21 N 1.28853 * 108.69522 * 359.56679 * 20 5 4 22 22 C 1.40181 * 125.76854 * 180.13222 * 21 20 5 23 23 C 1.38816 * 120.07966 * 130.09449 * 22 21 20 24 24 C 1.38123 * 119.95480 * 179.69926 * 23 22 21 25 25 C 1.38306 * 120.11714 * 0.57894 * 24 23 22 26 26 C 1.38241 * 120.15401 * 359.71388 * 25 24 23 27 27 C 1.38344 * 120.04438 * 359.97438 * 26 25 24 28 28 F 1.35102 * 120.05752 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47317 * 300.00098 * 1 2 3 30 30 H 1.09003 * 109.47090 * 60.00002 * 1 2 3 31 31 H 1.09008 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47138 * 240.00259 * 2 1 3 33 33 H 1.08994 * 109.47209 * 120.00187 * 2 1 3 34 34 H 1.08997 * 109.47087 * 299.99788 * 11 9 8 35 35 H 1.09000 * 109.46875 * 59.99818 * 11 9 8 36 36 H 1.09004 * 109.46903 * 179.97438 * 11 9 8 37 37 H 0.96996 * 119.99937 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.02197 * 359.97438 * 23 22 21 39 39 H 1.08001 * 119.94195 * 180.29134 * 24 23 22 40 40 H 1.07997 * 119.92221 * 179.74554 * 25 24 23 41 41 H 1.08001 * 119.97707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2588 2.1604 1.0555 5 6 2.6956 3.3565 0.6196 6 6 3.0739 4.5051 1.4677 7 8 3.0028 4.4164 2.6772 8 8 3.4968 5.6514 0.9000 9 6 3.8524 6.7382 1.7948 10 1 4.2232 6.3286 2.7344 11 6 2.6177 7.6002 2.0661 12 6 4.9248 7.5834 1.1572 13 1 5.3017 7.3289 0.1777 14 6 5.4255 8.6809 1.8249 15 7 4.9669 8.9904 3.0179 16 14 6.7554 9.7281 1.0348 17 1 7.0957 9.1723 -0.2995 18 1 6.2621 11.1202 0.8795 19 1 7.9650 9.7249 1.8962 20 7 2.7212 3.3239 -0.6960 21 7 2.3294 2.1607 -1.0880 22 6 2.2231 1.7380 -2.4204 23 6 2.7904 0.5342 -2.8157 24 6 2.6788 0.1172 -4.1277 25 6 2.0131 0.9025 -5.0513 26 6 1.4516 2.1049 -4.6641 27 6 1.5539 2.5259 -3.3502 28 9 1.0058 3.7013 -2.9717 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2470 8.0097 1.1265 35 1 1.8420 6.9888 2.5272 36 1 2.8846 8.4158 2.7382 37 1 5.3189 9.7628 3.4874 38 1 3.3148 -0.0778 -2.0968 39 1 3.1162 -0.8216 -4.4339 40 1 1.9313 0.5752 -6.0772 41 1 0.9321 2.7157 -5.3876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744135108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:37 Heat of formation + Delta-G solvation = -6.879462 kcal Electronic energy + Delta-G solvation = -28128.670012 eV Core-core repulsion = 23925.769136 eV Total energy + Delta-G solvation = -4202.900876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.26527 -43.70742 -39.66131 -39.18802 -35.75638 -34.83342 -34.68554 -33.22002 -31.38287 -30.91337 -30.04495 -29.27262 -25.46954 -25.20785 -25.01264 -23.49119 -22.82686 -21.43444 -21.10099 -19.70487 -18.57065 -17.84304 -17.35421 -17.17901 -16.50100 -16.17094 -15.88907 -15.67043 -15.34116 -15.09096 -14.81406 -14.66360 -14.48615 -14.31013 -13.67507 -13.18754 -13.00484 -12.86318 -12.64246 -12.50312 -12.17909 -12.01686 -11.91970 -11.82233 -11.36726 -11.20838 -11.05445 -10.82907 -10.76021 -10.47717 -10.32156 -10.24457 -9.94459 -9.83433 -9.53343 -9.47362 -9.05808 -8.86681 -8.45791 -6.14386 -4.20674 0.21095 0.52401 1.43785 1.91141 2.05264 2.87374 3.08756 3.27653 3.34427 3.41599 3.56175 3.61900 3.97514 4.05786 4.20386 4.30311 4.35845 4.57969 4.61852 4.82343 4.83219 4.86622 5.09384 5.18782 5.31636 5.37827 5.41794 5.42708 5.51277 5.62544 5.69781 5.84477 5.97229 6.06134 6.29489 6.52585 6.66418 6.92841 6.95118 7.12242 7.60784 7.74613 7.87305 7.99827 8.16062 8.62847 8.90886 9.44018 10.93386 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003131 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.380578 B = 8939.464775 C =10087.309475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.220 3.780 4 N -0.447 5.447 5 C 0.183 3.817 6 C 0.553 3.447 7 O -0.486 6.486 8 O -0.335 6.335 9 C 0.215 3.785 10 H 0.050 0.950 11 C -0.156 4.156 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 N -0.239 5.239 21 N -0.260 5.260 22 C 0.090 3.910 23 C -0.082 4.082 24 C -0.115 4.115 25 C -0.076 4.076 26 C -0.142 4.142 27 C 0.130 3.870 28 F -0.115 7.115 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.039 0.961 35 H 0.017 0.983 36 H 0.102 0.898 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 -22.820 -17.196 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.055 4.055 4 N -0.171 5.171 5 C -0.095 4.095 6 C 0.392 3.608 7 O -0.371 6.371 8 O -0.249 6.249 9 C 0.163 3.837 10 H 0.068 0.932 11 C -0.214 4.214 12 C -0.556 4.556 13 H 0.089 0.911 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.740 3.260 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.207 1.207 20 N -0.077 5.077 21 N -0.051 5.051 22 C -0.001 4.001 23 C -0.102 4.102 24 C -0.134 4.134 25 C -0.094 4.094 26 C -0.161 4.161 27 C 0.108 3.892 28 F -0.094 7.094 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.494 -22.039 -16.567 28.850 hybrid contribution 0.526 0.828 -0.218 1.005 sum -7.969 -21.211 -16.785 28.198 Atomic orbital electron populations 1.21750 0.93006 1.02862 1.03045 1.20247 0.97316 0.85543 1.05091 1.25164 1.00908 0.98181 0.81208 1.71277 1.17025 1.01774 1.27017 1.22921 1.05384 0.94137 0.87085 1.18758 0.75428 0.81911 0.84715 1.90832 1.49437 1.82804 1.14046 1.86636 1.73530 1.21188 1.43549 1.20811 0.93743 0.79758 0.89370 0.93200 1.22183 0.96282 1.01652 1.01249 1.21056 1.19532 1.10507 1.04538 0.91086 1.24883 0.97175 0.97017 0.94900 1.69909 1.42505 1.27664 1.12629 0.86194 0.80769 0.79656 0.79380 1.19454 1.20693 1.20732 1.74783 1.16530 1.01881 1.14473 1.44291 1.45773 1.09268 1.05725 1.17552 1.04629 0.97273 0.80661 1.21066 0.97394 0.94083 0.97610 1.21121 0.99691 1.00919 0.91660 1.21242 0.94910 0.92750 1.00524 1.21220 1.02769 0.98542 0.93610 1.17666 0.95569 0.82971 0.92950 1.91633 1.82462 1.43561 1.91702 0.91330 0.92693 0.90822 0.89294 0.87489 0.94234 0.96344 0.87985 0.92428 0.83706 0.83761 0.83869 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.77 16 2 C -0.04 -0.36 6.21 -27.88 -0.17 -0.53 16 3 C 0.22 3.16 7.07 -155.26 -1.10 2.06 16 4 N -0.45 -8.49 11.41 -8.49 -0.10 -8.59 16 5 C 0.18 3.96 7.98 -156.29 -1.25 2.71 16 6 C 0.55 13.88 7.95 34.60 0.27 14.16 16 7 O -0.49 -13.05 16.35 -19.25 -0.31 -13.37 16 8 O -0.33 -9.00 9.87 -40.57 -0.40 -9.40 16 9 C 0.22 6.16 2.56 -27.88 -0.07 6.09 16 10 H 0.05 1.54 7.16 -51.93 -0.37 1.17 16 11 C -0.16 -4.19 9.33 37.16 0.35 -3.84 16 12 C -0.52 -15.25 8.90 -34.44 -0.31 -15.56 16 13 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -25.94 11.32 55.43 0.63 -25.31 16 16 Si 0.91 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 N -0.24 -4.76 11.54 32.06 0.37 -4.39 16 21 N -0.26 -3.98 3.30 -7.95 -0.03 -4.00 16 22 C 0.09 1.03 5.97 -83.52 -0.50 0.53 16 23 C -0.08 -0.58 8.30 -39.41 -0.33 -0.91 16 24 C -0.12 -0.51 10.04 -39.60 -0.40 -0.91 16 25 C -0.08 -0.34 10.04 -39.56 -0.40 -0.74 16 26 C -0.14 -1.01 10.02 -39.54 -0.40 -1.40 16 27 C 0.13 1.46 7.27 -39.24 -0.29 1.18 16 28 F -0.12 -1.71 16.66 2.25 0.04 -1.67 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.09 0.49 5.42 -51.93 -0.28 0.21 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 2.86 6.07 -51.93 -0.32 2.55 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.15 0.80 7.01 -52.49 -0.37 0.43 16 39 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 40 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 41 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -36.73 362.95 -8.34 -45.07 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.69 Total: -4.28 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -4.30 Total: 3.73 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.87 Total: -42.30 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.72 Total: -22.77 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.73 -8.34 -45.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.194 kcal (2) G-P(sol) polarization free energy of solvation -36.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds