Wall clock time and date at job start Tue Mar 31 2020 17:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47227 * 2 1 4 4 N 1.30856 * 126.19479 * 88.20899 * 3 2 1 5 5 C 1.34591 * 107.28955 * 180.02562 * 4 3 2 6 6 C 1.47703 * 126.03314 * 180.02562 * 5 4 3 7 7 O 1.21483 * 119.99569 * 359.97438 * 6 5 4 8 8 O 1.34729 * 120.00639 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00403 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47043 * 29.99799 * 9 8 6 11 11 C 1.53003 * 109.46969 * 269.99984 * 9 8 6 12 12 C 1.50697 * 109.47223 * 150.00213 * 9 8 6 13 13 H 1.07996 * 119.99795 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99901 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00240 * 359.97438 * 14 12 9 16 16 Si 1.86804 * 119.99854 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47031 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46877 * 120.00098 * 16 14 12 19 19 H 1.48497 * 109.47066 * 239.99708 * 16 14 12 20 20 N 1.31625 * 107.94125 * 0.26282 * 5 4 3 21 21 N 1.28853 * 108.69522 * 359.56679 * 20 5 4 22 22 C 1.40181 * 125.76854 * 180.13222 * 21 20 5 23 23 C 1.38816 * 120.07966 * 130.09449 * 22 21 20 24 24 C 1.38123 * 119.95480 * 179.69926 * 23 22 21 25 25 C 1.38306 * 120.11714 * 0.57894 * 24 23 22 26 26 C 1.38241 * 120.15401 * 359.71388 * 25 24 23 27 27 C 1.38344 * 120.04438 * 359.97438 * 26 25 24 28 28 F 1.35102 * 120.05752 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47317 * 300.00098 * 1 2 3 30 30 H 1.09003 * 109.47090 * 60.00002 * 1 2 3 31 31 H 1.09008 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47138 * 240.00259 * 2 1 3 33 33 H 1.08994 * 109.47209 * 120.00187 * 2 1 3 34 34 H 1.08997 * 109.47087 * 299.99788 * 11 9 8 35 35 H 1.09000 * 109.46875 * 59.99818 * 11 9 8 36 36 H 1.09004 * 109.46903 * 179.97438 * 11 9 8 37 37 H 0.96996 * 119.99937 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.02197 * 359.97438 * 23 22 21 39 39 H 1.08001 * 119.94195 * 180.29134 * 24 23 22 40 40 H 1.07997 * 119.92221 * 179.74554 * 25 24 23 41 41 H 1.08001 * 119.97707 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2588 2.1604 1.0555 5 6 2.6956 3.3565 0.6196 6 6 3.0739 4.5051 1.4677 7 8 3.0028 4.4164 2.6772 8 8 3.4968 5.6514 0.9000 9 6 3.8524 6.7382 1.7948 10 1 4.2232 6.3286 2.7344 11 6 2.6177 7.6002 2.0661 12 6 4.9248 7.5834 1.1572 13 1 5.3017 7.3289 0.1777 14 6 5.4255 8.6809 1.8249 15 7 4.9669 8.9904 3.0179 16 14 6.7554 9.7281 1.0348 17 1 7.0957 9.1723 -0.2995 18 1 6.2621 11.1202 0.8795 19 1 7.9650 9.7249 1.8962 20 7 2.7212 3.3239 -0.6960 21 7 2.3294 2.1607 -1.0880 22 6 2.2231 1.7380 -2.4204 23 6 2.7904 0.5342 -2.8157 24 6 2.6788 0.1172 -4.1277 25 6 2.0131 0.9025 -5.0513 26 6 1.4516 2.1049 -4.6641 27 6 1.5539 2.5259 -3.3502 28 9 1.0058 3.7013 -2.9717 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2470 8.0097 1.1265 35 1 1.8420 6.9888 2.5272 36 1 2.8846 8.4158 2.7382 37 1 5.3189 9.7628 3.4874 38 1 3.3148 -0.0778 -2.0968 39 1 3.1162 -0.8216 -4.4339 40 1 1.9313 0.5752 -6.0772 41 1 0.9321 2.7157 -5.3876 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744135108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:35 Heat of formation + Delta-G solvation = -29.409077 kcal Electronic energy + Delta-G solvation = -28129.646970 eV Core-core repulsion = 23925.769136 eV Total energy + Delta-G solvation = -4203.877834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.18065 -45.00655 -41.35289 -40.17080 -37.82089 -35.86778 -35.72635 -35.38995 -32.14253 -31.97654 -31.64325 -30.62065 -27.55656 -26.87563 -25.86812 -24.15498 -23.85690 -23.16817 -22.19801 -21.54033 -19.57736 -19.24212 -18.61776 -18.45733 -18.30251 -17.64100 -17.24478 -16.89925 -16.58630 -16.50424 -15.98346 -15.89576 -15.44854 -15.11297 -14.92568 -14.48809 -14.35059 -14.08535 -13.98473 -13.56988 -13.46764 -13.32222 -13.10993 -13.07195 -12.87288 -12.63879 -12.56851 -12.47228 -12.21230 -12.12878 -12.03339 -11.88490 -11.78639 -11.73384 -11.10314 -11.01120 -10.66625 -10.12653 -9.85165 -8.34097 -6.51809 -0.57857 -0.00864 0.05463 0.72683 0.81358 1.35128 1.40713 1.44096 1.57436 1.80402 2.33582 2.35870 2.86971 2.95397 2.98257 3.04354 3.52653 3.55782 3.81815 4.10448 4.15342 4.17016 4.17153 4.26107 4.32122 4.41559 4.67821 4.69147 4.69756 4.75451 4.81777 4.90599 4.93403 4.95408 5.08835 5.12304 5.23860 5.25457 5.36280 5.39292 5.48757 5.71080 5.74474 5.91403 6.40488 6.58898 6.77897 7.18533 8.74676 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.003131 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.380578 B = 8939.464775 C =10087.309475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.235 3.765 4 N -0.480 5.480 5 C 0.147 3.853 6 C 0.553 3.447 7 O -0.516 6.516 8 O -0.344 6.344 9 C 0.216 3.784 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.551 4.551 13 H 0.065 0.935 14 C 0.018 3.982 15 N -0.914 5.914 16 Si 0.989 3.011 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.271 1.271 20 N -0.259 5.259 21 N -0.247 5.247 22 C 0.045 3.955 23 C -0.078 4.078 24 C -0.093 4.093 25 C -0.055 4.055 26 C -0.140 4.140 27 C 0.088 3.912 28 F -0.151 7.151 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.045 0.955 35 H 0.023 0.977 36 H 0.090 0.910 37 H 0.274 0.726 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.187 0.813 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -25.956 -20.885 34.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.038 4.038 4 N -0.205 5.205 5 C -0.129 4.129 6 C 0.393 3.607 7 O -0.403 6.403 8 O -0.259 6.259 9 C 0.164 3.836 10 H 0.033 0.967 11 C -0.200 4.200 12 C -0.589 4.589 13 H 0.083 0.917 14 C -0.182 4.182 15 N -0.552 5.552 16 Si 0.811 3.189 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.196 1.196 20 N -0.100 5.100 21 N -0.038 5.038 22 C -0.045 4.045 23 C -0.097 4.097 24 C -0.111 4.111 25 C -0.073 4.073 26 C -0.159 4.159 27 C 0.067 3.933 28 F -0.130 7.130 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.182 0.818 39 H 0.208 0.792 40 H 0.204 0.796 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.984 -25.204 -20.274 33.317 hybrid contribution 0.298 1.574 0.718 1.755 sum -7.685 -23.631 -19.556 31.621 Atomic orbital electron populations 1.21756 0.92186 1.04793 1.01569 1.20689 0.97774 0.81831 1.07704 1.26242 0.98271 0.99549 0.79777 1.71196 1.18535 1.01315 1.29496 1.22224 1.08868 0.94207 0.87581 1.19229 0.74317 0.82106 0.85012 1.90781 1.50798 1.83331 1.15352 1.86622 1.74063 1.21851 1.43323 1.20633 0.94449 0.80233 0.88317 0.96661 1.22018 0.95795 1.01008 1.01225 1.21251 1.20943 1.11880 1.04805 0.91719 1.25872 0.99262 0.97742 0.95275 1.70010 1.43351 1.28140 1.13689 0.85053 0.77521 0.77853 0.78445 1.19048 1.19201 1.19599 1.74636 1.16949 1.04767 1.13618 1.44556 1.43748 1.07742 1.07716 1.18174 1.07889 0.99535 0.78907 1.21427 0.96534 0.92287 0.99475 1.21697 0.97624 1.01926 0.89885 1.21826 0.92120 0.90787 1.02526 1.21548 1.02681 0.99832 0.91858 1.18267 0.97631 0.82532 0.94887 1.91537 1.83412 1.45760 1.92241 0.93764 0.93300 0.87063 0.85334 0.86043 0.93572 0.95824 0.89120 0.91666 0.81831 0.79219 0.79556 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.89 71.98 0.71 -1.23 16 2 C -0.04 -0.60 6.21 29.85 0.19 -0.41 16 3 C 0.23 6.80 7.07 138.07 0.98 7.78 16 4 N -0.48 -19.24 11.41 -180.78 -2.06 -21.30 16 5 C 0.15 6.86 7.98 137.03 1.09 7.95 16 6 C 0.55 30.03 7.95 70.32 0.56 30.58 16 7 O -0.52 -29.97 16.35 19.89 0.33 -29.64 16 8 O -0.34 -19.90 9.87 -56.39 -0.56 -20.46 16 9 C 0.22 13.17 2.56 29.85 0.08 13.25 16 10 H 0.02 1.03 7.16 -2.39 -0.02 1.02 16 11 C -0.14 -8.08 9.33 71.98 0.67 -7.41 16 12 C -0.55 -33.81 8.90 25.60 0.23 -33.58 16 13 H 0.06 3.94 7.81 -2.91 -0.02 3.92 16 14 C 0.02 1.07 5.30 84.66 0.45 1.52 16 15 N -0.91 -54.52 11.32 21.45 0.24 -54.28 16 16 Si 0.99 44.92 29.54 68.60 2.03 46.95 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 N -0.26 -10.99 11.54 -52.48 -0.61 -11.59 16 21 N -0.25 -7.75 3.30 -179.06 -0.59 -8.34 16 22 C 0.04 0.98 5.97 38.14 0.23 1.21 16 23 C -0.08 -0.82 8.30 22.38 0.19 -0.63 16 24 C -0.09 -0.27 10.04 22.26 0.22 -0.05 16 25 C -0.05 -0.19 10.04 22.29 0.22 0.03 16 26 C -0.14 -1.63 10.02 22.30 0.22 -1.41 16 27 C 0.09 1.97 7.27 22.49 0.16 2.13 16 28 F -0.15 -4.80 16.66 44.97 0.75 -4.05 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.13 0.86 5.42 -2.38 -0.01 0.85 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 5.32 6.07 -2.38 -0.01 5.31 16 37 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.16 1.05 7.01 -2.91 -0.02 1.03 16 39 H 0.19 -1.01 8.06 -2.91 -0.02 -1.03 16 40 H 0.19 -0.83 8.06 -2.91 -0.02 -0.86 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -89.67 362.95 6.80 -82.86 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: 1.08 Total: 0.12 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 6.20 Total: 19.72 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -3.02 Total: -95.51 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.23 Total: -50.10 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.75 Total: -4.05 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -89.67 6.80 -82.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744135108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.454 kcal (2) G-P(sol) polarization free energy of solvation -89.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds