Wall clock time and date at job start Tue Mar 31 2020 17:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46958 * 2 1 4 4 H 1.09002 * 109.46592 * 304.99798 * 3 2 1 5 5 O 1.42902 * 109.47173 * 64.99902 * 3 2 1 6 6 C 1.35956 * 116.99624 * 261.06275 * 5 3 2 7 7 C 1.38665 * 120.06639 * 5.65623 * 6 5 3 8 8 C 1.38176 * 119.96874 * 179.72547 * 7 6 5 9 9 C 1.38266 * 120.09760 * 0.54603 * 8 7 6 10 10 C 1.38261 * 120.12214 * 359.72830 * 9 8 7 11 11 C 1.38326 * 120.02831 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.04567 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47168 * 184.99839 * 3 2 1 14 14 O 1.21301 * 120.00144 * 244.99996 * 13 3 2 15 15 N 1.34776 * 119.99702 * 65.00093 * 13 3 2 16 16 C 1.40599 * 120.00010 * 180.02562 * 15 13 3 17 17 C 1.40653 * 126.07680 * 0.02562 * 16 15 13 18 18 N 1.30911 * 108.38328 * 180.02562 * 17 16 15 19 19 N 1.40064 * 108.40922 * 359.97438 * 18 17 16 20 20 C 1.37320 * 126.07247 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00410 * 185.18397 * 20 19 18 22 22 C 1.38990 * 119.99753 * 5.17605 * 20 19 18 23 23 N 1.31295 * 120.00010 * 354.78156 * 22 20 19 24 24 Si 1.86797 * 119.99828 * 174.78138 * 22 20 19 25 25 H 1.48499 * 109.47340 * 94.99871 * 24 22 20 26 26 H 1.48507 * 109.47311 * 214.99620 * 24 22 20 27 27 H 1.48499 * 109.47400 * 334.99269 * 24 22 20 28 28 C 1.35669 * 126.08363 * 179.71463 * 16 15 13 29 29 H 1.08998 * 109.47398 * 299.99937 * 1 2 3 30 30 H 1.08995 * 109.46903 * 60.00743 * 1 2 3 31 31 H 1.08998 * 109.46444 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47398 * 240.00062 * 2 1 3 33 33 H 1.09003 * 109.47209 * 119.99340 * 2 1 3 34 34 H 1.07996 * 120.01116 * 359.96863 * 7 6 5 35 35 H 1.07999 * 119.95312 * 180.27655 * 8 7 6 36 36 H 1.07995 * 119.94145 * 179.74703 * 9 8 7 37 37 H 1.08002 * 119.98014 * 179.97438 * 10 9 8 38 38 H 0.97000 * 120.00248 * 359.97438 * 15 13 3 39 39 H 1.08000 * 125.81098 * 359.96715 * 17 16 15 40 40 H 0.96998 * 119.99488 * 179.97438 * 23 22 20 41 41 H 1.08000 * 126.25154 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6619 2.0815 1.2210 6 6 0.5602 2.8773 1.1858 7 6 -0.2091 2.9481 0.0342 8 6 -1.3316 3.7533 0.0025 9 6 -1.6828 4.4974 1.1136 10 6 -0.9153 4.4342 2.2619 11 6 0.2060 3.6252 2.3015 12 9 0.9558 3.5627 3.4235 13 6 3.5419 1.4444 -0.1238 14 8 4.2251 1.8613 0.7877 15 7 4.1260 0.9829 -1.2473 16 6 5.5272 0.9841 -1.3627 17 6 6.4380 1.4344 -0.3900 18 7 7.6511 1.2786 -0.8567 19 7 7.5635 0.7246 -2.1402 20 6 8.6200 0.4112 -2.9594 21 1 8.4386 0.0645 -3.9661 22 6 9.9230 0.5403 -2.4932 23 7 10.1478 1.0580 -1.3077 24 14 11.3543 -0.0227 -3.5532 25 1 11.8897 1.1331 -4.3166 26 1 12.4230 -0.5809 -2.6861 27 1 10.8884 -1.0680 -4.4995 28 6 6.2415 0.5457 -2.4295 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 0.0668 2.3712 -0.8360 35 1 -1.9331 3.8048 -0.8930 36 1 -2.5583 5.1290 1.0846 37 1 -1.1915 5.0168 3.1284 38 1 3.5796 0.6492 -1.9761 39 1 6.1803 1.8406 0.5770 40 1 11.0571 1.1477 -0.9823 41 1 5.8379 0.1330 -3.3423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748531087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:46 Heat of formation + Delta-G solvation = 0.755766 kcal Electronic energy + Delta-G solvation = -27738.547457 eV Core-core repulsion = 23535.977669 eV Total energy + Delta-G solvation = -4202.569788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.82767 -40.83243 -39.78297 -38.66853 -37.40818 -34.42613 -33.87459 -33.04400 -30.97858 -30.33121 -30.17012 -28.45289 -26.99383 -24.79304 -23.68624 -22.71387 -22.16950 -21.00461 -20.24788 -19.46055 -18.88026 -17.58175 -17.31715 -16.98838 -16.42816 -16.08712 -15.56025 -15.46137 -15.27553 -14.94759 -14.82857 -14.43130 -14.23251 -13.99398 -13.73965 -13.25710 -13.16741 -13.02310 -12.91784 -12.57041 -12.30002 -12.06059 -11.93033 -11.70410 -11.66963 -11.46351 -11.28718 -11.19357 -10.95700 -10.80486 -10.53955 -10.19933 -9.25662 -9.19212 -9.13436 -8.82278 -8.36976 -8.07750 -6.74475 -6.57423 -4.24752 0.85206 0.99347 2.58179 2.71725 2.99350 3.04520 3.09940 3.31340 3.61338 3.64154 3.85588 4.04651 4.33665 4.40419 4.46289 4.55048 4.58735 4.67742 4.86585 4.94367 4.95004 4.99946 5.01603 5.21115 5.25695 5.38872 5.61481 5.70604 5.77056 5.81774 5.88922 5.97077 6.09007 6.20911 6.36453 6.42854 6.84317 6.93063 7.02154 7.13904 7.21511 7.84108 8.10383 8.24203 8.59080 8.78041 9.36009 9.64954 10.38766 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.002328 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.663452 B =12023.442009 C =12482.621832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.070 3.930 4 H 0.101 0.899 5 O -0.271 6.271 6 C 0.104 3.896 7 C -0.189 4.189 8 C -0.090 4.090 9 C -0.134 4.134 10 C -0.117 4.117 11 C 0.070 3.930 12 F -0.129 7.129 13 C 0.496 3.504 14 O -0.510 6.510 15 N -0.618 5.618 16 C -0.061 4.061 17 C -0.032 4.032 18 N -0.260 5.260 19 N -0.142 5.142 20 C -0.324 4.324 21 H 0.117 0.883 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.934 3.066 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.263 1.263 28 C -0.082 4.082 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.396 0.604 39 H 0.176 0.824 40 H 0.275 0.725 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.658 1.460 -0.962 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.010 3.990 4 H 0.118 0.882 5 O -0.182 6.182 6 C 0.057 3.943 7 C -0.207 4.207 8 C -0.108 4.108 9 C -0.152 4.152 10 C -0.136 4.136 11 C 0.050 3.950 12 F -0.108 7.108 13 C 0.280 3.720 14 O -0.384 6.384 15 N -0.262 5.262 16 C -0.166 4.166 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.091 4.909 20 C -0.456 4.456 21 H 0.134 0.866 22 C -0.171 4.171 23 N -0.395 5.395 24 Si 0.758 3.242 25 H -0.197 1.197 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.233 4.233 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.546 1.927 0.325 21.634 hybrid contribution -0.507 -0.571 -1.083 1.326 sum -22.053 1.356 -0.758 22.108 Atomic orbital electron populations 1.21954 0.94631 1.02611 1.02167 1.22006 0.97045 0.93972 1.04671 1.22417 0.93990 0.95131 0.87498 0.88200 1.86308 1.40875 1.58169 1.32884 1.19134 0.88624 0.92440 0.94079 1.21326 0.97586 1.04112 0.97717 1.20994 0.95915 0.95203 0.98669 1.20915 1.00615 1.01055 0.92609 1.21038 0.93606 0.98763 1.00218 1.17039 0.93874 1.01222 0.82853 1.91537 1.75201 1.95243 1.48782 1.19892 0.88480 0.80435 0.83228 1.90657 1.63731 1.45355 1.38670 1.42327 1.05437 1.61550 1.16926 1.17221 0.81177 1.19507 0.98718 1.24129 0.89492 1.06405 1.00711 1.78270 1.18289 1.19509 0.93044 1.44561 1.02775 1.33368 1.10217 1.19873 0.83381 1.46140 0.96200 0.86584 1.25655 0.99310 0.95657 0.96499 1.70223 1.22012 1.31573 1.15670 0.85819 0.79786 0.79249 0.79338 1.19650 1.20027 1.18746 1.21234 0.85349 1.16163 1.00586 0.92129 0.92279 0.91771 0.89421 0.89733 0.83983 0.85062 0.84944 0.84123 0.77043 0.80753 0.91418 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.47 37.16 0.31 -0.91 16 2 C -0.14 -1.39 5.61 -26.73 -0.15 -1.54 16 3 C 0.07 0.89 2.54 -27.88 -0.07 0.82 16 4 H 0.10 0.98 5.45 -51.93 -0.28 0.70 16 5 O -0.27 -4.13 8.99 -39.46 -0.35 -4.49 16 6 C 0.10 1.32 5.65 -39.18 -0.22 1.10 16 7 C -0.19 -1.75 7.32 -39.45 -0.29 -2.04 16 8 C -0.09 -0.66 10.04 -39.59 -0.40 -1.06 16 9 C -0.13 -0.99 10.04 -39.56 -0.40 -1.38 16 10 C -0.12 -1.09 10.02 -39.54 -0.40 -1.49 16 11 C 0.07 0.89 7.31 -39.30 -0.29 0.61 16 12 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 13 C 0.50 8.84 7.15 -10.99 -0.08 8.76 16 14 O -0.51 -11.68 13.66 -14.32 -0.20 -11.88 16 15 N -0.62 -10.65 5.37 -10.00 -0.05 -10.70 16 16 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 17 C -0.03 -0.85 10.85 -17.03 -0.18 -1.04 16 18 N -0.26 -7.64 10.41 30.80 0.32 -7.32 16 19 N -0.14 -3.88 3.74 -11.41 -0.04 -3.93 16 20 C -0.32 -8.53 10.24 -14.81 -0.15 -8.68 16 21 H 0.12 2.72 7.84 -52.48 -0.41 2.30 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 23 N -0.77 -21.59 11.83 55.50 0.66 -20.93 16 24 Si 0.93 18.88 29.55 -169.99 -5.02 13.85 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 28 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 29 H 0.06 0.55 6.49 -51.93 -0.34 0.22 16 30 H 0.06 0.36 6.69 -51.93 -0.35 0.01 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.72 7.77 -51.93 -0.40 0.32 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.14 1.04 4.24 -52.49 -0.22 0.82 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.40 4.95 8.53 -40.82 -0.35 4.60 16 39 H 0.18 4.71 5.92 -52.49 -0.31 4.40 16 40 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -35.79 350.87 -6.88 -42.67 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.34 Total: 9.18 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.17 Total: -9.82 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.88 Total: -42.87 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.55 Total: -16.37 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.79 -6.88 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748531087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.425 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds