Wall clock time and date at job start Tue Mar 31 2020 17:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46958 * 2 1 4 4 H 1.09002 * 109.46592 * 304.99798 * 3 2 1 5 5 O 1.42902 * 109.47173 * 64.99902 * 3 2 1 6 6 C 1.35956 * 116.99624 * 261.06275 * 5 3 2 7 7 C 1.38665 * 120.06639 * 5.65623 * 6 5 3 8 8 C 1.38176 * 119.96874 * 179.72547 * 7 6 5 9 9 C 1.38266 * 120.09760 * 0.54603 * 8 7 6 10 10 C 1.38261 * 120.12214 * 359.72830 * 9 8 7 11 11 C 1.38326 * 120.02831 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.04567 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47168 * 184.99839 * 3 2 1 14 14 O 1.21301 * 120.00144 * 244.99996 * 13 3 2 15 15 N 1.34776 * 119.99702 * 65.00093 * 13 3 2 16 16 C 1.40599 * 120.00010 * 180.02562 * 15 13 3 17 17 C 1.40653 * 126.07680 * 0.02562 * 16 15 13 18 18 N 1.30911 * 108.38328 * 180.02562 * 17 16 15 19 19 N 1.40064 * 108.40922 * 359.97438 * 18 17 16 20 20 C 1.37320 * 126.07247 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00410 * 185.18397 * 20 19 18 22 22 C 1.38990 * 119.99753 * 5.17605 * 20 19 18 23 23 N 1.31295 * 120.00010 * 354.78156 * 22 20 19 24 24 Si 1.86797 * 119.99828 * 174.78138 * 22 20 19 25 25 H 1.48499 * 109.47340 * 94.99871 * 24 22 20 26 26 H 1.48507 * 109.47311 * 214.99620 * 24 22 20 27 27 H 1.48499 * 109.47400 * 334.99269 * 24 22 20 28 28 C 1.35669 * 126.08363 * 179.71463 * 16 15 13 29 29 H 1.08998 * 109.47398 * 299.99937 * 1 2 3 30 30 H 1.08995 * 109.46903 * 60.00743 * 1 2 3 31 31 H 1.08998 * 109.46444 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47398 * 240.00062 * 2 1 3 33 33 H 1.09003 * 109.47209 * 119.99340 * 2 1 3 34 34 H 1.07996 * 120.01116 * 359.96863 * 7 6 5 35 35 H 1.07999 * 119.95312 * 180.27655 * 8 7 6 36 36 H 1.07995 * 119.94145 * 179.74703 * 9 8 7 37 37 H 1.08002 * 119.98014 * 179.97438 * 10 9 8 38 38 H 0.97000 * 120.00248 * 359.97438 * 15 13 3 39 39 H 1.08000 * 125.81098 * 359.96715 * 17 16 15 40 40 H 0.96998 * 119.99488 * 179.97438 * 23 22 20 41 41 H 1.08000 * 126.25154 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6619 2.0815 1.2210 6 6 0.5602 2.8773 1.1858 7 6 -0.2091 2.9481 0.0342 8 6 -1.3316 3.7533 0.0025 9 6 -1.6828 4.4974 1.1136 10 6 -0.9153 4.4342 2.2619 11 6 0.2060 3.6252 2.3015 12 9 0.9558 3.5627 3.4235 13 6 3.5419 1.4444 -0.1238 14 8 4.2251 1.8613 0.7877 15 7 4.1260 0.9829 -1.2473 16 6 5.5272 0.9841 -1.3627 17 6 6.4380 1.4344 -0.3900 18 7 7.6511 1.2786 -0.8567 19 7 7.5635 0.7246 -2.1402 20 6 8.6200 0.4112 -2.9594 21 1 8.4386 0.0645 -3.9661 22 6 9.9230 0.5403 -2.4932 23 7 10.1478 1.0580 -1.3077 24 14 11.3543 -0.0227 -3.5532 25 1 11.8897 1.1331 -4.3166 26 1 12.4230 -0.5809 -2.6861 27 1 10.8884 -1.0680 -4.4995 28 6 6.2415 0.5457 -2.4295 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 0.0668 2.3712 -0.8360 35 1 -1.9331 3.8048 -0.8930 36 1 -2.5583 5.1290 1.0846 37 1 -1.1915 5.0168 3.1284 38 1 3.5796 0.6492 -1.9761 39 1 6.1803 1.8406 0.5770 40 1 11.0571 1.1477 -0.9823 41 1 5.8379 0.1330 -3.3423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748531087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:45 Heat of formation + Delta-G solvation = -23.224848 kcal Electronic energy + Delta-G solvation = -27739.587334 eV Core-core repulsion = 23535.977669 eV Total energy + Delta-G solvation = -4203.609666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.83185 -42.01889 -41.38713 -40.04869 -38.38248 -36.03380 -35.24958 -34.47222 -32.27569 -31.67751 -30.99150 -29.99647 -28.31053 -26.63795 -24.42845 -23.48089 -23.33582 -22.77535 -21.63752 -21.16980 -19.84228 -19.26182 -18.54916 -17.92768 -17.46566 -17.36591 -17.11959 -16.82867 -16.39881 -16.08366 -15.83824 -15.69745 -15.51109 -15.29189 -14.99301 -14.82083 -14.73893 -14.12500 -13.78016 -13.51498 -13.42652 -13.29408 -13.08792 -12.94534 -12.89877 -12.78912 -12.62386 -12.35315 -12.08244 -12.02997 -11.86256 -11.57106 -11.04955 -10.84929 -10.66654 -10.12594 -9.89826 -9.20852 -8.57650 -8.48366 -6.26119 0.14745 0.26363 1.15612 1.39066 1.44400 1.52861 1.59161 1.82955 2.12225 2.44638 2.46408 2.62835 2.87249 3.07799 3.26794 3.51647 3.61594 3.71181 3.84345 3.96265 4.19233 4.31758 4.36814 4.39518 4.43017 4.55505 4.58274 4.74277 4.95599 4.99114 5.03238 5.03846 5.11643 5.12668 5.27172 5.28131 5.34603 5.38903 5.44734 5.70483 5.94581 6.21812 6.29891 6.65898 6.71744 7.29757 7.45698 7.65392 8.51362 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.002328 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.663452 B =12023.442009 C =12482.621832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.081 3.919 4 H 0.138 0.862 5 O -0.311 6.311 6 C 0.075 3.925 7 C -0.186 4.186 8 C -0.078 4.078 9 C -0.124 4.124 10 C -0.118 4.118 11 C 0.023 3.977 12 F -0.158 7.158 13 C 0.491 3.509 14 O -0.569 6.569 15 N -0.603 5.603 16 C -0.045 4.045 17 C -0.064 4.064 18 N -0.312 5.312 19 N -0.167 5.167 20 C -0.353 4.353 21 H 0.145 0.855 22 C -0.009 4.009 23 N -0.826 5.826 24 Si 1.020 2.980 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.240 1.240 28 C -0.073 4.073 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.424 0.576 39 H 0.159 0.841 40 H 0.276 0.724 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.100 0.810 -4.973 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.021 3.979 4 H 0.155 0.845 5 O -0.224 6.224 6 C 0.029 3.971 7 C -0.204 4.204 8 C -0.096 4.096 9 C -0.142 4.142 10 C -0.137 4.137 11 C 0.004 3.996 12 F -0.137 7.137 13 C 0.277 3.723 14 O -0.447 6.447 15 N -0.250 5.250 16 C -0.151 4.151 17 C -0.239 4.239 18 N -0.144 5.144 19 N 0.064 4.936 20 C -0.484 4.484 21 H 0.162 0.838 22 C -0.220 4.220 23 N -0.454 5.454 24 Si 0.839 3.161 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.163 1.163 28 C -0.224 4.224 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.187 0.813 37 H 0.174 0.826 38 H 0.262 0.738 39 H 0.176 0.824 40 H 0.086 0.914 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -25.074 1.263 -3.724 25.381 hybrid contribution 0.325 -0.286 0.198 0.476 sum -24.749 0.978 -3.526 25.018 Atomic orbital electron populations 1.21928 0.92377 1.03700 1.02699 1.22049 0.98894 0.91717 1.04603 1.22477 0.89657 0.97366 0.88361 0.84472 1.86251 1.42644 1.59298 1.34198 1.19456 0.88911 0.93156 0.95555 1.21612 0.97554 1.04398 0.96855 1.21517 0.94967 0.93238 0.99885 1.21412 1.00776 1.00501 0.91486 1.21347 0.92551 0.97922 1.01862 1.17694 0.95577 1.03705 0.82668 1.91448 1.76262 1.95691 1.50337 1.21024 0.90855 0.78337 0.82056 1.90642 1.65710 1.47596 1.40740 1.42199 1.03325 1.61442 1.18029 1.17284 0.83566 1.17102 0.97170 1.24104 0.90461 1.08036 1.01293 1.78168 1.19829 1.21390 0.95032 1.44875 1.04548 1.34304 1.09866 1.20665 0.83815 1.46507 0.97364 0.83772 1.26938 1.02470 0.94925 0.97678 1.70417 1.22708 1.33917 1.18397 0.84568 0.75063 0.79201 0.77302 1.18963 1.20423 1.16325 1.22033 0.83982 1.14482 1.01878 0.93796 0.89461 0.90433 0.86932 0.92365 0.81802 0.81061 0.81347 0.82641 0.73751 0.82394 0.91440 0.78764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.47 71.98 0.61 -1.27 16 2 C -0.13 -2.45 5.61 30.60 0.17 -2.28 16 3 C 0.08 1.98 2.54 29.85 0.08 2.06 16 4 H 0.14 2.24 5.45 -2.39 -0.01 2.23 16 5 O -0.31 -9.83 8.99 -74.07 -0.67 -10.49 16 6 C 0.07 1.89 5.65 22.53 0.13 2.02 16 7 C -0.19 -2.85 7.32 22.36 0.16 -2.69 16 8 C -0.08 -0.79 10.04 22.26 0.22 -0.57 16 9 C -0.12 -1.36 10.04 22.28 0.22 -1.13 16 10 C -0.12 -2.06 10.02 22.30 0.22 -1.83 16 11 C 0.02 0.61 7.31 22.45 0.16 0.78 16 12 F -0.16 -5.30 17.11 44.97 0.77 -4.53 16 13 C 0.49 17.69 7.15 87.66 0.63 18.31 16 14 O -0.57 -27.78 13.66 15.89 0.22 -27.56 16 15 N -0.60 -20.02 5.37 -303.93 -1.63 -21.65 16 16 C -0.05 -2.07 6.90 37.73 0.26 -1.81 16 17 C -0.06 -3.61 10.85 85.42 0.93 -2.69 16 18 N -0.31 -19.28 10.41 -56.46 -0.59 -19.87 16 19 N -0.17 -9.28 3.74 -190.01 -0.71 -9.99 16 20 C -0.35 -18.54 10.24 84.01 0.86 -17.68 16 21 H 0.15 6.46 7.84 -2.91 -0.02 6.44 16 22 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 23 N -0.83 -48.50 11.83 21.66 0.26 -48.25 16 24 Si 1.02 38.57 29.55 68.60 2.03 40.60 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 28 C -0.07 -3.32 11.49 83.37 0.96 -2.36 16 29 H 0.04 0.72 6.49 -2.39 -0.02 0.71 16 30 H 0.09 0.60 6.69 -2.39 -0.02 0.58 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.45 7.77 -2.39 -0.02 1.43 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.16 1.62 4.24 -2.91 -0.01 1.60 16 35 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.42 9.14 8.53 -92.71 -0.79 8.35 16 39 H 0.16 9.32 5.92 -2.91 -0.02 9.30 16 40 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.20 6.60 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -88.58 350.87 6.07 -82.51 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.31 Total: 30.36 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.08 Total: -11.13 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -2.67 Total: -99.75 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.45 Total: -38.05 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.77 Total: -4.53 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -88.58 6.07 -82.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748531087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.284 kcal (2) G-P(sol) polarization free energy of solvation -88.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds