Wall clock time and date at job start Tue Mar 31 2020 17:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 H 1.08999 * 109.47358 * 54.99893 * 3 2 1 5 5 O 1.42904 * 109.46794 * 294.99925 * 3 2 1 6 6 C 1.35954 * 116.99879 * 94.15105 * 5 3 2 7 7 C 1.38657 * 120.06186 * 2.28116 * 6 5 3 8 8 C 1.38182 * 119.96548 * 179.72120 * 7 6 5 9 9 C 1.38261 * 120.09665 * 0.55925 * 8 7 6 10 10 C 1.38254 * 120.12648 * 359.71500 * 9 8 7 11 11 C 1.38339 * 120.02739 * 0.02562 * 10 9 8 12 12 F 1.35102 * 120.04608 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46832 * 175.00261 * 3 2 1 14 14 O 1.21302 * 120.00053 * 114.99674 * 13 3 2 15 15 N 1.34777 * 119.99677 * 294.99574 * 13 3 2 16 16 C 1.40601 * 119.99471 * 180.02562 * 15 13 3 17 17 C 1.40645 * 126.08385 * 359.97170 * 16 15 13 18 18 N 1.30908 * 108.38287 * 179.77504 * 17 16 15 19 19 N 1.40059 * 108.40986 * 0.38737 * 18 17 16 20 20 C 1.37326 * 126.06967 * 179.87293 * 19 18 17 21 21 H 1.08007 * 120.00194 * 179.68705 * 20 19 18 22 22 C 1.38984 * 120.00073 * 359.41271 * 20 19 18 23 23 N 1.31294 * 119.99972 * 0.27899 * 22 20 19 24 24 Si 1.86806 * 120.00079 * 180.27103 * 22 20 19 25 25 H 1.48501 * 109.46655 * 90.00619 * 24 22 20 26 26 H 1.48500 * 109.47102 * 210.00317 * 24 22 20 27 27 H 1.48501 * 109.47147 * 330.00454 * 24 22 20 28 28 C 1.35684 * 126.07603 * 179.97438 * 16 15 13 29 29 H 1.09006 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46979 * 300.00247 * 1 2 3 31 31 H 1.08999 * 109.47747 * 59.99980 * 1 2 3 32 32 H 1.08994 * 109.47185 * 239.99658 * 2 1 3 33 33 H 1.09003 * 109.47035 * 119.99895 * 2 1 3 34 34 H 1.07997 * 120.01755 * 359.97438 * 7 6 5 35 35 H 1.08002 * 119.95187 * 180.27590 * 8 7 6 36 36 H 1.08002 * 119.93876 * 179.74588 * 9 8 7 37 37 H 1.07997 * 119.98952 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00367 * 0.02562 * 15 13 3 39 39 H 1.07998 * 125.80890 * 0.02562 * 17 16 15 40 40 H 0.97006 * 120.00252 * 179.97438 * 23 22 20 41 41 H 1.07993 * 126.24942 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5054 2.7961 -1.2114 7 6 -0.2248 2.9199 -0.0392 8 6 -1.3970 3.6516 -0.0303 9 6 -1.8490 4.2510 -1.1913 10 6 -1.1270 4.1254 -2.3636 11 6 0.0500 3.3985 -2.3772 12 9 0.7561 3.2759 -3.5225 13 6 3.5419 1.4443 0.1238 14 8 4.2251 1.8611 -0.7878 15 7 4.1259 0.9828 1.2473 16 6 5.5272 0.9849 1.3630 17 6 6.4379 1.4361 0.3908 18 7 7.6508 1.2849 0.8596 19 7 7.5633 0.7254 2.1406 20 6 8.6199 0.4127 2.9601 21 1 8.4388 -0.0127 3.9362 22 6 9.9225 0.6383 2.5313 23 7 10.1428 1.1555 1.3448 24 14 11.3601 0.2058 3.6431 25 1 11.7817 -1.1944 3.3848 26 1 12.4941 1.1235 3.3654 27 1 10.9471 0.3447 5.0627 28 6 6.2413 0.5520 2.4324 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.1245 2.4481 0.8673 35 1 -1.9633 3.7516 0.8839 36 1 -2.7676 4.8189 -1.1824 37 1 -1.4823 4.5942 -3.2693 38 1 3.5796 0.6492 1.9761 39 1 6.1803 1.8422 -0.5762 40 1 11.0519 1.3134 1.0455 41 1 5.8374 0.1439 3.3470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748531089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:50 Heat of formation + Delta-G solvation = 1.390024 kcal Electronic energy + Delta-G solvation = -27734.734384 eV Core-core repulsion = 23532.192099 eV Total energy + Delta-G solvation = -4202.542285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.83805 -40.85253 -39.79094 -38.67255 -37.41596 -34.42221 -33.85761 -33.04038 -30.98293 -30.34706 -30.18481 -28.45041 -26.99853 -24.79740 -23.68789 -22.71709 -22.16204 -21.00683 -20.25142 -19.46524 -18.89022 -17.57399 -17.31361 -16.99334 -16.48248 -16.09454 -15.55734 -15.46297 -15.28051 -14.94989 -14.81790 -14.43939 -14.23510 -13.99637 -13.74228 -13.24581 -13.15741 -13.04513 -12.91647 -12.56398 -12.32041 -12.06590 -11.93736 -11.70416 -11.66985 -11.46482 -11.29444 -11.22704 -10.94920 -10.78055 -10.54647 -10.21118 -9.23822 -9.19376 -9.15072 -8.82611 -8.36757 -8.08063 -6.74730 -6.56996 -4.24856 0.84684 0.99570 2.56538 2.71058 2.99501 3.04188 3.09445 3.29912 3.62226 3.63980 3.85479 4.03972 4.32978 4.39038 4.46835 4.54520 4.58664 4.67189 4.86120 4.93898 4.94827 5.00693 5.02884 5.20980 5.24717 5.39211 5.62329 5.69839 5.76656 5.81497 5.88489 5.97188 6.08704 6.20776 6.35907 6.42395 6.83840 6.92575 7.01719 7.13464 7.21308 7.83790 8.10028 8.23948 8.58790 8.77730 9.35671 9.64860 10.38909 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.002301 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.786034 B =12165.712169 C =12591.361557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C 0.069 3.931 4 H 0.100 0.900 5 O -0.271 6.271 6 C 0.106 3.894 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.134 4.134 10 C -0.117 4.117 11 C 0.068 3.932 12 F -0.130 7.130 13 C 0.498 3.502 14 O -0.510 6.510 15 N -0.618 5.618 16 C -0.061 4.061 17 C -0.032 4.032 18 N -0.260 5.260 19 N -0.141 5.141 20 C -0.323 4.323 21 H 0.117 0.883 22 C 0.046 3.954 23 N -0.769 5.769 24 Si 0.935 3.065 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.264 1.264 28 C -0.083 4.083 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.397 0.603 39 H 0.176 0.824 40 H 0.275 0.725 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.762 1.194 0.908 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.009 3.991 4 H 0.118 0.882 5 O -0.182 6.182 6 C 0.059 3.941 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.153 4.153 10 C -0.136 4.136 11 C 0.048 3.952 12 F -0.108 7.108 13 C 0.282 3.718 14 O -0.384 6.384 15 N -0.262 5.262 16 C -0.166 4.166 17 C -0.207 4.207 18 N -0.091 5.091 19 N 0.091 4.909 20 C -0.455 4.455 21 H 0.134 0.866 22 C -0.172 4.172 23 N -0.395 5.395 24 Si 0.759 3.241 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.234 4.234 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.230 0.770 39 H 0.193 0.807 40 H 0.086 0.914 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.642 1.687 -0.369 21.710 hybrid contribution -0.516 -0.537 1.102 1.330 sum -22.158 1.149 0.733 22.200 Atomic orbital electron populations 1.21962 0.94620 1.02596 1.02198 1.22029 0.97065 0.94079 1.04673 1.22399 0.94105 0.95000 0.87559 0.88222 1.86317 1.35825 1.62177 1.33909 1.19114 0.87610 0.93809 0.93574 1.21284 0.97580 1.04607 0.97228 1.20992 0.95314 0.95815 0.98585 1.20908 1.00722 1.01681 0.91961 1.21033 0.93238 0.99014 1.00274 1.17022 0.93441 1.03693 0.81000 1.91534 1.77772 1.94560 1.46945 1.19810 0.88342 0.80443 0.83246 1.90658 1.63720 1.45361 1.38662 1.42312 1.05449 1.61544 1.16901 1.17219 0.81152 1.19618 0.98642 1.24128 0.89513 1.06401 1.00704 1.78274 1.18272 1.19657 0.92867 1.44563 1.02755 1.33416 1.10145 1.19874 0.83390 1.43642 0.98634 0.86581 1.25654 0.99330 0.95604 0.96572 1.70218 1.22143 1.31065 1.16087 0.85824 0.79664 0.78843 0.79791 1.19573 1.20067 1.18801 1.21230 0.85312 1.16431 1.00422 0.91795 0.92232 0.92200 0.89756 0.89428 0.84049 0.85062 0.84952 0.84134 0.77032 0.80748 0.91403 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 8.45 37.16 0.31 -0.93 16 2 C -0.14 -1.42 5.61 -26.73 -0.15 -1.57 16 3 C 0.07 0.89 2.57 -27.88 -0.07 0.82 16 4 H 0.10 0.97 5.38 -51.93 -0.28 0.69 16 5 O -0.27 -4.14 9.07 -39.45 -0.36 -4.50 16 6 C 0.11 1.33 5.34 -39.18 -0.21 1.12 16 7 C -0.19 -1.73 7.16 -39.45 -0.28 -2.02 16 8 C -0.09 -0.65 10.04 -39.59 -0.40 -1.05 16 9 C -0.13 -0.98 10.04 -39.57 -0.40 -1.38 16 10 C -0.12 -1.07 10.02 -39.54 -0.40 -1.46 16 11 C 0.07 0.86 7.31 -39.30 -0.29 0.57 16 12 F -0.13 -1.94 17.11 2.25 0.04 -1.90 16 13 C 0.50 8.86 7.15 -10.98 -0.08 8.78 16 14 O -0.51 -11.66 13.66 -14.32 -0.20 -11.86 16 15 N -0.62 -10.62 5.37 -10.00 -0.05 -10.67 16 16 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 17 C -0.03 -0.85 10.85 -17.04 -0.18 -1.04 16 18 N -0.26 -7.62 10.40 30.80 0.32 -7.30 16 19 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 20 C -0.32 -8.50 10.25 -14.81 -0.15 -8.66 16 21 H 0.12 2.71 7.83 -52.48 -0.41 2.30 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.58 11.81 55.49 0.66 -20.93 16 24 Si 0.93 18.87 29.55 -169.99 -5.02 13.84 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 28 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.37 6.80 -51.92 -0.35 0.01 16 31 H 0.06 0.56 6.27 -51.93 -0.33 0.23 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.73 7.77 -51.93 -0.40 0.32 16 34 H 0.14 1.04 4.54 -52.49 -0.24 0.80 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.40 4.94 8.53 -40.82 -0.35 4.59 16 39 H 0.18 4.70 5.92 -52.49 -0.31 4.39 16 40 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -35.72 350.57 -6.87 -42.59 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.34 Total: 9.15 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.16 Total: -9.80 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.88 Total: -42.81 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.55 Total: -16.35 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.72 -6.87 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748531089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.979 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds