Wall clock time and date at job start Tue Mar 31 2020 17:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 H 1.08999 * 109.47358 * 54.99893 * 3 2 1 5 5 O 1.42904 * 109.46794 * 294.99925 * 3 2 1 6 6 C 1.35954 * 116.99879 * 94.15105 * 5 3 2 7 7 C 1.38657 * 120.06186 * 2.28116 * 6 5 3 8 8 C 1.38182 * 119.96548 * 179.72120 * 7 6 5 9 9 C 1.38261 * 120.09665 * 0.55925 * 8 7 6 10 10 C 1.38254 * 120.12648 * 359.71500 * 9 8 7 11 11 C 1.38339 * 120.02739 * 0.02562 * 10 9 8 12 12 F 1.35102 * 120.04608 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46832 * 175.00261 * 3 2 1 14 14 O 1.21302 * 120.00053 * 114.99674 * 13 3 2 15 15 N 1.34777 * 119.99677 * 294.99574 * 13 3 2 16 16 C 1.40601 * 119.99471 * 180.02562 * 15 13 3 17 17 C 1.40645 * 126.08385 * 359.97170 * 16 15 13 18 18 N 1.30908 * 108.38287 * 179.77504 * 17 16 15 19 19 N 1.40059 * 108.40986 * 0.38737 * 18 17 16 20 20 C 1.37326 * 126.06967 * 179.87293 * 19 18 17 21 21 H 1.08007 * 120.00194 * 179.68705 * 20 19 18 22 22 C 1.38984 * 120.00073 * 359.41271 * 20 19 18 23 23 N 1.31294 * 119.99972 * 0.27899 * 22 20 19 24 24 Si 1.86806 * 120.00079 * 180.27103 * 22 20 19 25 25 H 1.48501 * 109.46655 * 90.00619 * 24 22 20 26 26 H 1.48500 * 109.47102 * 210.00317 * 24 22 20 27 27 H 1.48501 * 109.47147 * 330.00454 * 24 22 20 28 28 C 1.35684 * 126.07603 * 179.97438 * 16 15 13 29 29 H 1.09006 * 109.47605 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46979 * 300.00247 * 1 2 3 31 31 H 1.08999 * 109.47747 * 59.99980 * 1 2 3 32 32 H 1.08994 * 109.47185 * 239.99658 * 2 1 3 33 33 H 1.09003 * 109.47035 * 119.99895 * 2 1 3 34 34 H 1.07997 * 120.01755 * 359.97438 * 7 6 5 35 35 H 1.08002 * 119.95187 * 180.27590 * 8 7 6 36 36 H 1.08002 * 119.93876 * 179.74588 * 9 8 7 37 37 H 1.07997 * 119.98952 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00367 * 0.02562 * 15 13 3 39 39 H 1.07998 * 125.80890 * 0.02562 * 17 16 15 40 40 H 0.97006 * 120.00252 * 179.97438 * 23 22 20 41 41 H 1.07993 * 126.24942 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5054 2.7961 -1.2114 7 6 -0.2248 2.9199 -0.0392 8 6 -1.3970 3.6516 -0.0303 9 6 -1.8490 4.2510 -1.1913 10 6 -1.1270 4.1254 -2.3636 11 6 0.0500 3.3985 -2.3772 12 9 0.7561 3.2759 -3.5225 13 6 3.5419 1.4443 0.1238 14 8 4.2251 1.8611 -0.7878 15 7 4.1259 0.9828 1.2473 16 6 5.5272 0.9849 1.3630 17 6 6.4379 1.4361 0.3908 18 7 7.6508 1.2849 0.8596 19 7 7.5633 0.7254 2.1406 20 6 8.6199 0.4127 2.9601 21 1 8.4388 -0.0127 3.9362 22 6 9.9225 0.6383 2.5313 23 7 10.1428 1.1555 1.3448 24 14 11.3601 0.2058 3.6431 25 1 11.7817 -1.1944 3.3848 26 1 12.4941 1.1235 3.3654 27 1 10.9471 0.3447 5.0627 28 6 6.2413 0.5520 2.4324 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.1245 2.4481 0.8673 35 1 -1.9633 3.7516 0.8839 36 1 -2.7676 4.8189 -1.1824 37 1 -1.4823 4.5942 -3.2693 38 1 3.5796 0.6492 1.9761 39 1 6.1803 1.8422 -0.5762 40 1 11.0519 1.3134 1.0455 41 1 5.8374 0.1439 3.3470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748531089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:49 Heat of formation + Delta-G solvation = -22.511516 kcal Electronic energy + Delta-G solvation = -27735.770832 eV Core-core repulsion = 23532.192099 eV Total energy + Delta-G solvation = -4203.578733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.82717 -42.02674 -41.39776 -40.05496 -38.38200 -36.03472 -35.24257 -34.45425 -32.27505 -31.67360 -31.01709 -29.98964 -28.31374 -26.64048 -24.42706 -23.47320 -23.33635 -22.77279 -21.63660 -21.17029 -19.84813 -19.25680 -18.54305 -17.92296 -17.46827 -17.38852 -17.11946 -16.83451 -16.40741 -16.08637 -15.82947 -15.69861 -15.49197 -15.28891 -14.99867 -14.81637 -14.74074 -14.09450 -13.81051 -13.50633 -13.41968 -13.28314 -13.10442 -12.94901 -12.90586 -12.79478 -12.62243 -12.35686 -12.09402 -12.04152 -11.87561 -11.55165 -11.04528 -10.85386 -10.66830 -10.12613 -9.88985 -9.19179 -8.57648 -8.47713 -6.25984 0.15203 0.27738 1.15586 1.38820 1.44546 1.50809 1.58603 1.83037 2.12359 2.44768 2.47124 2.63285 2.87454 3.08721 3.26737 3.50901 3.60889 3.70409 3.85043 3.96447 4.18549 4.32920 4.37045 4.39583 4.43153 4.55227 4.58081 4.73799 4.96657 4.98728 5.02042 5.03893 5.11469 5.12261 5.27219 5.28457 5.33748 5.38795 5.45175 5.70760 5.94513 6.21879 6.29918 6.65670 6.71895 7.29462 7.45602 7.65567 8.51706 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.002301 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.786034 B =12165.712169 C =12591.361557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.080 3.920 4 H 0.139 0.861 5 O -0.312 6.312 6 C 0.077 3.923 7 C -0.186 4.186 8 C -0.078 4.078 9 C -0.124 4.124 10 C -0.117 4.117 11 C 0.023 3.977 12 F -0.158 7.158 13 C 0.493 3.507 14 O -0.568 6.568 15 N -0.603 5.603 16 C -0.045 4.045 17 C -0.064 4.064 18 N -0.311 5.311 19 N -0.167 5.167 20 C -0.352 4.352 21 H 0.145 0.855 22 C -0.009 4.009 23 N -0.827 5.827 24 Si 1.020 2.980 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.241 1.241 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.424 0.576 39 H 0.159 0.841 40 H 0.276 0.724 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.191 0.655 4.922 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.021 3.979 4 H 0.156 0.844 5 O -0.225 6.225 6 C 0.032 3.968 7 C -0.204 4.204 8 C -0.095 4.095 9 C -0.142 4.142 10 C -0.136 4.136 11 C 0.003 3.997 12 F -0.137 7.137 13 C 0.280 3.720 14 O -0.447 6.447 15 N -0.250 5.250 16 C -0.151 4.151 17 C -0.239 4.239 18 N -0.144 5.144 19 N 0.064 4.936 20 C -0.483 4.483 21 H 0.162 0.838 22 C -0.221 4.221 23 N -0.455 5.455 24 Si 0.839 3.161 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.164 1.164 28 C -0.224 4.224 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.263 0.737 39 H 0.176 0.824 40 H 0.086 0.914 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -25.157 1.132 3.682 25.450 hybrid contribution 0.308 -0.303 -0.187 0.471 sum -24.848 0.829 3.495 25.107 Atomic orbital electron populations 1.21933 0.92423 1.03647 1.02697 1.22067 0.98867 0.91897 1.04584 1.22444 0.89794 0.97202 0.88440 0.84432 1.86255 1.37731 1.63310 1.35209 1.19425 0.87613 0.94813 0.94983 1.21561 0.97795 1.04662 0.96426 1.21505 0.94313 0.93713 1.00009 1.21401 1.01208 1.00672 0.90955 1.21341 0.92049 0.98128 1.02058 1.17663 0.95149 1.06260 0.80612 1.91447 1.78730 1.95053 1.48497 1.20922 0.90697 0.78349 0.82077 1.90643 1.65695 1.47595 1.40725 1.42179 1.03339 1.61434 1.18003 1.17280 0.83537 1.17213 0.97091 1.24106 0.90479 1.08037 1.01282 1.78172 1.19815 1.21539 0.94838 1.44876 1.04529 1.34356 1.09806 1.20668 0.83818 1.44119 0.99692 0.83750 1.26936 1.02517 0.94665 0.97932 1.70415 1.22819 1.33410 1.18828 0.84576 0.74878 0.78339 0.78299 1.18908 1.20430 1.16389 1.22030 0.83956 1.14711 1.01734 0.90494 0.89443 0.93899 0.92431 0.86937 0.81948 0.81123 0.81371 0.82621 0.73740 0.82371 0.91446 0.78767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.45 71.98 0.61 -1.33 16 2 C -0.14 -2.51 5.61 30.59 0.17 -2.33 16 3 C 0.08 1.97 2.57 29.85 0.08 2.05 16 4 H 0.14 2.23 5.38 -2.39 -0.01 2.22 16 5 O -0.31 -9.87 9.07 -74.05 -0.67 -10.54 16 6 C 0.08 1.93 5.34 22.53 0.12 2.05 16 7 C -0.19 -2.84 7.16 22.36 0.16 -2.68 16 8 C -0.08 -0.77 10.04 22.26 0.22 -0.55 16 9 C -0.12 -1.33 10.04 22.28 0.22 -1.11 16 10 C -0.12 -1.99 10.02 22.30 0.22 -1.77 16 11 C 0.02 0.59 7.31 22.45 0.16 0.76 16 12 F -0.16 -5.21 17.11 44.97 0.77 -4.44 16 13 C 0.49 17.73 7.15 87.66 0.63 18.35 16 14 O -0.57 -27.70 13.66 15.89 0.22 -27.48 16 15 N -0.60 -19.95 5.37 -303.92 -1.63 -21.58 16 16 C -0.05 -2.07 6.90 37.73 0.26 -1.81 16 17 C -0.06 -3.61 10.85 85.42 0.93 -2.69 16 18 N -0.31 -19.22 10.40 -56.47 -0.59 -19.81 16 19 N -0.17 -9.25 3.74 -190.01 -0.71 -9.96 16 20 C -0.35 -18.49 10.25 84.01 0.86 -17.63 16 21 H 0.15 6.45 7.83 -2.91 -0.02 6.43 16 22 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 23 N -0.83 -48.49 11.81 21.66 0.26 -48.23 16 24 Si 1.02 38.54 29.55 68.60 2.03 40.57 16 25 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 26 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 27 H -0.24 -8.12 7.11 99.48 0.71 -7.42 16 28 C -0.07 -3.33 11.49 83.38 0.96 -2.38 16 29 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.09 0.64 6.80 -2.38 -0.02 0.62 16 31 H 0.04 0.72 6.27 -2.39 -0.01 0.71 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.47 7.77 -2.39 -0.02 1.45 16 34 H 0.16 1.62 4.54 -2.91 -0.01 1.60 16 35 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.42 9.11 8.53 -92.71 -0.79 8.32 16 39 H 0.16 9.31 5.92 -2.91 -0.02 9.30 16 40 H 0.28 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.20 6.59 8.06 -2.91 -0.02 6.56 16 Total: -1.00 -88.29 350.57 6.05 -82.24 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.31 Total: 30.31 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 6.07 Total: -11.07 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -2.67 Total: -99.58 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.45 Total: -38.02 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.77 Total: -4.44 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -88.29 6.05 -82.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748531089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.725 kcal (2) G-P(sol) polarization free energy of solvation -88.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds