Wall clock time and date at job start Tue Mar 31 2020 18:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46750 * 2 1 4 4 N 1.46491 * 109.47084 * 119.99874 * 2 1 3 5 5 C 1.34776 * 120.00210 * 279.08679 * 4 2 1 6 6 S 1.71200 * 120.00199 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.40108 * 119.99968 * 359.97438 * 7 5 4 9 9 C 1.29757 * 119.99836 * 180.02562 * 8 7 5 10 10 C 1.47494 * 119.99748 * 179.97438 * 9 8 7 11 11 C 1.39760 * 120.12276 * 359.97438 * 10 9 8 12 12 C 1.37978 * 119.98007 * 180.02562 * 11 10 9 13 13 C 1.38248 * 120.22695 * 359.73327 * 12 11 10 14 14 C 1.38976 * 120.25058 * 0.54204 * 13 12 11 15 15 O 1.35765 * 119.99449 * 179.73146 * 14 13 12 16 16 C 1.34828 * 117.00186 * 173.90947 * 15 14 13 17 17 H 1.08006 * 119.99891 * 5.08199 * 16 15 14 18 18 C 1.38653 * 120.00212 * 185.07989 * 16 15 14 19 19 N 1.31554 * 120.00419 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99601 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47416 * 89.99830 * 20 18 16 22 22 H 1.48503 * 109.47025 * 209.99504 * 20 18 16 23 23 H 1.48501 * 109.47642 * 329.99811 * 20 18 16 24 24 C 1.38613 * 120.01718 * 359.45359 * 14 13 12 25 25 C 1.53002 * 109.47093 * 240.00395 * 2 1 3 26 26 C 1.52998 * 117.49838 * 124.07958 * 25 2 1 27 27 C 1.52996 * 117.50236 * 55.45258 * 25 2 1 28 28 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47714 * 299.99973 * 1 2 3 30 30 H 1.09003 * 109.47423 * 60.00026 * 1 2 3 31 31 H 0.97005 * 120.00219 * 99.08999 * 4 2 1 32 32 H 0.96998 * 120.00337 * 180.02562 * 7 5 4 33 33 H 1.07999 * 120.00070 * 0.02562 * 9 8 7 34 34 H 1.08008 * 120.00920 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.88281 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.87736 * 180.29522 * 13 12 11 37 37 H 0.96997 * 120.00353 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.11828 * 180.25190 * 24 14 13 39 39 H 1.08998 * 115.54622 * 269.77927 * 25 2 1 40 40 H 1.08997 * 117.50239 * 359.97438 * 26 25 2 41 41 H 1.08999 * 117.50086 * 145.02182 * 26 25 2 42 42 H 1.08992 * 117.49892 * 214.97905 * 27 25 2 43 43 H 1.09005 * 117.49948 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.0691 -0.0408 2.3758 6 16 1.5637 1.5918 2.4765 7 7 2.5188 -0.6760 3.4762 8 7 2.9330 -2.0119 3.3938 9 6 3.3655 -2.6236 4.4533 10 6 3.8010 -4.0301 4.3667 11 6 3.7484 -4.7066 3.1449 12 6 4.1560 -6.0226 3.0673 13 6 4.6223 -6.6743 4.1938 14 6 4.6733 -6.0124 5.4148 15 8 5.1271 -6.6591 6.5189 16 6 5.2705 -5.9266 7.6417 17 1 4.9510 -4.8951 7.6580 18 6 5.8281 -6.4976 8.7756 19 7 5.9685 -5.7828 9.8710 20 14 6.3812 -8.2816 8.7471 21 1 7.8005 -8.3530 8.3158 22 1 6.2474 -8.8631 10.1070 23 1 5.5358 -9.0470 7.7960 24 6 4.2665 -4.6904 5.5045 25 6 2.0400 -0.7212 -1.2493 26 6 2.9924 0.0461 -2.1686 27 6 1.5499 -0.2144 -2.6072 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.3051 -1.6155 1.1391 32 1 2.5551 -0.2085 4.3253 33 1 3.4059 -2.1030 5.3987 34 1 3.3879 -4.1998 2.2618 35 1 4.1150 -6.5437 2.1223 36 1 4.9444 -7.7029 4.1257 37 1 6.3589 -6.1821 10.6640 38 1 4.3094 -4.1733 6.4516 39 1 2.2002 -1.7938 -1.1404 40 1 3.2554 1.0647 -1.8836 41 1 3.7795 -0.5217 -2.6647 42 1 1.3881 -0.9535 -3.3917 43 1 0.8644 0.6331 -2.6106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751531312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:47 Heat of formation + Delta-G solvation = 80.134553 kcal Electronic energy + Delta-G solvation = -24519.321164 eV Core-core repulsion = 20886.406674 eV Total energy + Delta-G solvation = -3632.914490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.81012 -39.43091 -38.27219 -37.04086 -35.81350 -33.40419 -32.51046 -30.74205 -29.85267 -29.16485 -25.67705 -25.22237 -24.32642 -22.75739 -22.43184 -21.84134 -21.15880 -20.53905 -18.66229 -18.40428 -17.74210 -17.19654 -16.48084 -16.01334 -15.47558 -15.15567 -14.93432 -14.72118 -14.55483 -14.21716 -14.12248 -13.90820 -13.79760 -13.16523 -12.98043 -12.51968 -12.43800 -12.36467 -12.18149 -11.78013 -11.55202 -11.42012 -11.24107 -11.18177 -11.12090 -10.94855 -10.85479 -10.57349 -10.48910 -10.35899 -9.66324 -9.49385 -9.02667 -8.39167 -7.91117 -7.73464 -7.63486 -6.57627 -4.26249 0.58610 1.44002 1.52361 1.95985 2.43323 2.54817 2.66204 3.11627 3.15787 3.28711 3.36849 4.09771 4.13750 4.24799 4.46256 4.48222 4.55225 4.61327 4.71812 4.83778 4.93106 5.04297 5.07863 5.22840 5.26953 5.35950 5.46602 5.49551 5.57204 5.60891 5.71986 5.73898 5.75416 5.93821 6.03037 6.05673 6.21559 6.33725 6.40133 6.76797 6.85363 6.89703 6.94540 7.27627 7.54978 7.62712 7.83477 8.76516 9.34847 10.49377 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002156 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.737456 B =12983.569573 C =14139.800343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.112 0.888 4 N -0.658 5.658 5 C 0.600 3.400 6 S -0.643 6.643 7 N -0.539 5.539 8 N -0.302 5.302 9 C 0.178 3.822 10 C -0.035 4.035 11 C -0.156 4.156 12 C -0.087 4.087 13 C -0.164 4.164 14 C 0.152 3.848 15 O -0.212 6.212 16 C -0.395 4.395 17 H 0.107 0.893 18 C 0.066 3.934 19 N -0.874 5.874 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.181 4.181 25 C -0.171 4.171 26 C -0.175 4.175 27 C -0.164 4.164 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.282 0.718 38 H 0.141 0.859 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 5.666 -19.958 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.130 0.870 4 N -0.286 5.286 5 C 0.238 3.762 6 S -0.518 6.518 7 N -0.262 5.262 8 N -0.108 5.108 9 C -0.032 4.032 10 C -0.038 4.038 11 C -0.177 4.177 12 C -0.105 4.105 13 C -0.184 4.184 14 C 0.100 3.900 15 O -0.116 6.116 16 C -0.471 4.471 17 H 0.124 0.876 18 C -0.138 4.138 19 N -0.511 5.511 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.203 4.203 25 C -0.190 4.190 26 C -0.212 4.212 27 C -0.202 4.202 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.250 0.750 32 H 0.259 0.741 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.105 6.487 -20.765 22.886 hybrid contribution 0.847 -1.500 1.504 2.287 sum -6.258 4.987 -19.261 20.857 Atomic orbital electron populations 1.22173 0.93658 1.02341 1.03986 1.20965 0.95093 0.97377 0.79830 0.87001 1.45064 1.61122 1.16023 1.06405 1.21981 0.80416 0.92679 0.81076 1.93575 1.68834 0.96430 1.92943 1.46260 1.60804 1.08686 1.10445 1.74623 1.15588 0.92644 1.27928 1.24714 0.89807 0.94483 0.94202 1.17992 1.02018 0.89260 0.94486 1.20816 1.05459 0.94979 0.96466 1.20637 0.98266 0.94313 0.97320 1.20469 1.06554 1.00841 0.90577 1.18907 0.93319 0.90437 0.87359 1.83610 1.73817 1.37399 1.16819 1.20725 1.42590 0.97231 0.86511 0.87578 1.24475 0.95543 1.00010 0.93821 1.69630 1.42188 1.37208 1.02040 0.86176 0.79786 0.83103 0.77833 1.19772 1.20666 1.18292 1.21356 1.04829 0.95522 0.98589 1.22451 1.05773 0.99689 0.91083 1.23106 0.93388 1.01709 1.02977 1.22967 0.97609 1.03517 0.96062 0.92654 0.90275 0.91005 0.75028 0.74108 0.85645 0.86486 0.86212 0.86003 0.90817 0.84121 0.87296 0.88252 0.88520 0.88359 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.13 37.16 0.34 -1.06 16 2 C 0.17 1.52 2.60 -67.94 -0.18 1.34 16 3 H 0.11 1.17 6.75 -51.93 -0.35 0.82 16 4 N -0.66 -6.70 5.08 -55.53 -0.28 -6.98 16 5 C 0.60 7.47 7.89 -86.92 -0.69 6.79 16 6 S -0.64 -9.88 27.78 -107.50 -2.99 -12.86 16 7 N -0.54 -6.31 6.26 29.96 0.19 -6.12 16 8 N -0.30 -3.60 9.46 32.16 0.30 -3.30 16 9 C 0.18 2.21 10.75 -14.66 -0.16 2.05 16 10 C -0.03 -0.52 5.87 -105.07 -0.62 -1.13 16 11 C -0.16 -2.17 9.58 -39.11 -0.37 -2.54 16 12 C -0.09 -1.22 10.02 -39.67 -0.40 -1.61 16 13 C -0.16 -2.74 9.98 -39.30 -0.39 -3.13 16 14 C 0.15 3.04 6.64 -39.17 -0.26 2.78 16 15 O -0.21 -5.01 8.58 0.01 0.00 -5.01 16 16 C -0.40 -10.15 9.94 30.89 0.31 -9.84 16 17 H 0.11 2.74 5.43 -52.48 -0.29 2.45 16 18 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 19 N -0.87 -23.72 13.96 55.48 0.77 -22.95 16 20 Si 0.91 20.23 28.62 -169.99 -4.86 15.36 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 23 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.18 -3.26 8.90 -38.96 -0.35 -3.61 16 25 C -0.17 -1.18 5.41 -90.62 -0.49 -1.67 16 26 C -0.17 -1.13 10.18 -26.73 -0.27 -1.40 16 27 C -0.16 -0.93 9.70 -26.73 -0.26 -1.19 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.86 7.02 -51.93 -0.36 0.50 16 30 H 0.07 0.50 7.02 -51.93 -0.36 0.14 16 31 H 0.41 3.90 7.50 -40.82 -0.31 3.59 16 32 H 0.41 4.45 8.63 -182.59 -1.58 2.87 16 33 H 0.13 1.32 8.02 -52.49 -0.42 0.90 16 34 H 0.12 1.40 7.55 -52.48 -0.40 1.01 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.88 8.06 -52.48 -0.42 1.45 16 37 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.14 2.63 5.64 -52.49 -0.30 2.33 16 39 H 0.11 0.71 7.99 -51.93 -0.42 0.30 16 40 H 0.10 0.67 8.03 -51.93 -0.42 0.26 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.53 7.32 -51.93 -0.38 0.15 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -28.95 378.93 -11.86 -40.81 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.82 Total: 7.96 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.88 Total: -12.62 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.98 Total: -39.34 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.01 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.86 Total: 15.36 kcal Atomic # 16 Polarization: -9.88 SS G_CDS: -2.99 Total: -12.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.95 -11.86 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751531312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.943 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds