Wall clock time and date at job start Tue Mar 31 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46750 * 2 1 4 4 N 1.46491 * 109.47084 * 119.99874 * 2 1 3 5 5 C 1.34776 * 120.00210 * 279.08679 * 4 2 1 6 6 S 1.71200 * 120.00199 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.40108 * 119.99968 * 359.97438 * 7 5 4 9 9 C 1.29757 * 119.99836 * 180.02562 * 8 7 5 10 10 C 1.47494 * 119.99748 * 179.97438 * 9 8 7 11 11 C 1.39760 * 120.12276 * 359.97438 * 10 9 8 12 12 C 1.37978 * 119.98007 * 180.02562 * 11 10 9 13 13 C 1.38248 * 120.22695 * 359.73327 * 12 11 10 14 14 C 1.38976 * 120.25058 * 0.54204 * 13 12 11 15 15 O 1.35765 * 119.99449 * 179.73146 * 14 13 12 16 16 C 1.34828 * 117.00186 * 173.90947 * 15 14 13 17 17 H 1.08006 * 119.99891 * 5.08199 * 16 15 14 18 18 C 1.38653 * 120.00212 * 185.07989 * 16 15 14 19 19 N 1.31554 * 120.00419 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99601 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47416 * 89.99830 * 20 18 16 22 22 H 1.48503 * 109.47025 * 209.99504 * 20 18 16 23 23 H 1.48501 * 109.47642 * 329.99811 * 20 18 16 24 24 C 1.38613 * 120.01718 * 359.45359 * 14 13 12 25 25 C 1.53002 * 109.47093 * 240.00395 * 2 1 3 26 26 C 1.52998 * 117.49838 * 124.07958 * 25 2 1 27 27 C 1.52996 * 117.50236 * 55.45258 * 25 2 1 28 28 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47714 * 299.99973 * 1 2 3 30 30 H 1.09003 * 109.47423 * 60.00026 * 1 2 3 31 31 H 0.97005 * 120.00219 * 99.08999 * 4 2 1 32 32 H 0.96998 * 120.00337 * 180.02562 * 7 5 4 33 33 H 1.07999 * 120.00070 * 0.02562 * 9 8 7 34 34 H 1.08008 * 120.00920 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.88281 * 180.02562 * 12 11 10 36 36 H 1.08007 * 119.87736 * 180.29522 * 13 12 11 37 37 H 0.96997 * 120.00353 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.11828 * 180.25190 * 24 14 13 39 39 H 1.08998 * 115.54622 * 269.77927 * 25 2 1 40 40 H 1.08997 * 117.50239 * 359.97438 * 26 25 2 41 41 H 1.08999 * 117.50086 * 145.02182 * 26 25 2 42 42 H 1.08992 * 117.49892 * 214.97905 * 27 25 2 43 43 H 1.09005 * 117.49948 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.0691 -0.0408 2.3758 6 16 1.5637 1.5918 2.4765 7 7 2.5188 -0.6760 3.4762 8 7 2.9330 -2.0119 3.3938 9 6 3.3655 -2.6236 4.4533 10 6 3.8010 -4.0301 4.3667 11 6 3.7484 -4.7066 3.1449 12 6 4.1560 -6.0226 3.0673 13 6 4.6223 -6.6743 4.1938 14 6 4.6733 -6.0124 5.4148 15 8 5.1271 -6.6591 6.5189 16 6 5.2705 -5.9266 7.6417 17 1 4.9510 -4.8951 7.6580 18 6 5.8281 -6.4976 8.7756 19 7 5.9685 -5.7828 9.8710 20 14 6.3812 -8.2816 8.7471 21 1 7.8005 -8.3530 8.3158 22 1 6.2474 -8.8631 10.1070 23 1 5.5358 -9.0470 7.7960 24 6 4.2665 -4.6904 5.5045 25 6 2.0400 -0.7212 -1.2493 26 6 2.9924 0.0461 -2.1686 27 6 1.5499 -0.2144 -2.6072 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.3051 -1.6155 1.1391 32 1 2.5551 -0.2085 4.3253 33 1 3.4059 -2.1030 5.3987 34 1 3.3879 -4.1998 2.2618 35 1 4.1150 -6.5437 2.1223 36 1 4.9444 -7.7029 4.1257 37 1 6.3589 -6.1821 10.6640 38 1 4.3094 -4.1733 6.4516 39 1 2.2002 -1.7938 -1.1404 40 1 3.2554 1.0647 -1.8836 41 1 3.7795 -0.5217 -2.6647 42 1 1.3881 -0.9535 -3.3917 43 1 0.8644 0.6331 -2.6106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751531312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:46 Heat of formation + Delta-G solvation = 65.348594 kcal Electronic energy + Delta-G solvation = -24519.962331 eV Core-core repulsion = 20886.406674 eV Total energy + Delta-G solvation = -3633.555657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97262 -40.59372 -39.16364 -38.33784 -36.72474 -34.58743 -34.20116 -31.82690 -30.94334 -30.38829 -27.30718 -26.29462 -25.25180 -23.59347 -23.22257 -23.11766 -21.94565 -21.64068 -19.95828 -19.65441 -18.99881 -18.47316 -17.34779 -17.03764 -16.87329 -16.40223 -16.08523 -15.71912 -15.55964 -15.51854 -15.28444 -15.23256 -14.64553 -14.48514 -14.17450 -14.01758 -13.77415 -13.29688 -13.05260 -12.77541 -12.69985 -12.60297 -12.41953 -12.29431 -12.27097 -12.01273 -11.90043 -11.68701 -11.36679 -11.35195 -11.10387 -10.89993 -10.44270 -9.56503 -9.19716 -8.98454 -8.93283 -8.48024 -6.20843 -0.54051 0.33457 0.43334 0.64604 1.34843 1.35173 1.40479 1.41086 1.54028 1.77383 2.29358 2.80314 2.85424 3.04927 3.16897 3.45126 3.53630 3.79675 3.94401 4.05869 4.12590 4.17360 4.23630 4.30044 4.39149 4.42231 4.48585 4.64772 4.75987 4.84163 4.89602 4.93563 5.00813 5.03939 5.07821 5.18344 5.28119 5.33625 5.37383 5.44750 5.55813 5.61774 5.76277 5.86446 6.07006 6.16248 6.59337 6.86826 7.59799 8.62876 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.002156 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.737456 B =12983.569573 C =14139.800343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.094 0.906 4 N -0.641 5.641 5 C 0.610 3.390 6 S -0.702 6.702 7 N -0.535 5.535 8 N -0.288 5.288 9 C 0.174 3.826 10 C -0.033 4.033 11 C -0.135 4.135 12 C -0.075 4.075 13 C -0.164 4.164 14 C 0.114 3.886 15 O -0.243 6.243 16 C -0.396 4.396 17 H 0.088 0.912 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.194 4.194 25 C -0.175 4.175 26 C -0.181 4.181 27 C -0.153 4.153 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.418 0.582 32 H 0.420 0.580 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.283 0.717 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.270 4.480 -23.792 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 H 0.112 0.888 4 N -0.268 5.268 5 C 0.246 3.754 6 S -0.577 6.577 7 N -0.258 5.258 8 N -0.094 5.094 9 C -0.036 4.036 10 C -0.035 4.035 11 C -0.156 4.156 12 C -0.093 4.093 13 C -0.184 4.184 14 C 0.065 3.935 15 O -0.151 6.151 16 C -0.473 4.473 17 H 0.105 0.895 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.216 4.216 25 C -0.193 4.193 26 C -0.218 4.218 27 C -0.190 4.190 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.259 0.741 32 H 0.265 0.735 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.182 0.818 36 H 0.152 0.848 37 H 0.093 0.907 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.724 5.298 -24.671 26.389 hybrid contribution 0.892 -0.988 2.284 2.644 sum -6.832 4.310 -22.387 23.799 Atomic orbital electron populations 1.22112 0.93257 1.02650 1.03547 1.21029 0.95317 0.96743 0.80135 0.88782 1.45179 1.59494 1.16168 1.05974 1.21600 0.80294 0.91681 0.81810 1.93715 1.71214 0.99279 1.93523 1.46170 1.60422 1.08573 1.10585 1.74535 1.14728 0.92489 1.27621 1.24601 0.90152 0.93671 0.95223 1.18073 1.01234 0.90310 0.93926 1.21313 1.02607 0.94985 0.96691 1.21136 0.95946 0.94237 0.97959 1.20816 1.05971 1.01577 0.90027 1.19485 0.94616 0.91691 0.87664 1.83556 1.76660 1.37694 1.17153 1.20692 1.42072 0.96816 0.87675 0.89473 1.25234 0.96177 1.03822 0.93620 1.69718 1.44843 1.38888 1.02838 0.85269 0.79297 0.78605 0.77927 1.19266 1.19827 1.18364 1.21313 1.05807 0.95303 0.99143 1.22396 1.06551 0.99934 0.90442 1.23154 0.94201 1.01374 1.03071 1.23065 0.96919 1.03694 0.95355 0.91846 0.92828 0.89388 0.74134 0.73514 0.84099 0.83371 0.81752 0.84796 0.90704 0.86043 0.86214 0.89097 0.87690 0.86894 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.13 71.98 0.66 -1.76 16 2 C 0.17 2.70 2.60 44.99 0.12 2.82 16 3 H 0.09 1.90 6.75 -2.39 -0.02 1.88 16 4 N -0.64 -11.51 5.08 -329.59 -1.68 -13.18 16 5 C 0.61 14.27 7.89 179.05 1.41 15.68 16 6 S -0.70 -21.53 27.78 -56.49 -1.57 -23.10 16 7 N -0.53 -11.46 6.26 -59.11 -0.37 -11.83 16 8 N -0.29 -6.00 9.46 -52.16 -0.49 -6.49 16 9 C 0.17 3.93 10.75 87.44 0.94 4.87 16 10 C -0.03 -0.90 5.87 -20.15 -0.12 -1.02 16 11 C -0.14 -3.14 9.58 22.58 0.22 -2.92 16 12 C -0.08 -1.74 10.02 22.21 0.22 -1.51 16 13 C -0.16 -5.09 9.98 22.45 0.22 -4.86 16 14 C 0.11 4.57 6.64 22.54 0.15 4.72 16 15 O -0.24 -11.85 8.58 -22.88 -0.20 -12.04 16 16 C -0.40 -21.36 9.94 67.92 0.68 -20.69 16 17 H 0.09 4.83 5.43 -2.91 -0.02 4.82 16 18 C 0.01 0.55 5.49 84.83 0.47 1.02 16 19 N -0.92 -52.46 13.96 21.61 0.30 -52.15 16 20 Si 0.97 42.78 28.62 68.60 1.96 44.74 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 24 C -0.19 -7.03 8.90 22.67 0.20 -6.83 16 25 C -0.17 -1.89 5.41 -10.79 -0.06 -1.95 16 26 C -0.18 -1.91 10.18 30.60 0.31 -1.60 16 27 C -0.15 -1.28 9.70 30.59 0.30 -0.98 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.13 7.02 -2.39 -0.02 1.11 16 30 H 0.09 1.05 7.02 -2.39 -0.02 1.04 16 31 H 0.42 6.40 7.50 -92.70 -0.70 5.71 16 32 H 0.42 8.44 8.63 -213.32 -1.84 6.59 16 33 H 0.14 2.79 8.02 -2.91 -0.02 2.76 16 34 H 0.15 2.62 7.55 -2.91 -0.02 2.60 16 35 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 36 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.12 4.83 5.64 -2.91 -0.02 4.82 16 39 H 0.12 1.08 7.99 -2.39 -0.02 1.06 16 40 H 0.09 1.12 8.03 -2.39 -0.02 1.10 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.10 0.82 7.32 -2.38 -0.02 0.80 16 Total: -1.00 -66.43 378.93 2.20 -64.23 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -1.47 Total: 24.83 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 5.71 Total: -15.01 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.24 Total: -83.66 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.20 Total: -12.04 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.96 Total: 44.74 kcal Atomic # 16 Polarization: -21.53 SS G_CDS: -1.57 Total: -23.10 kcal Total: -66.43 2.20 -64.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751531312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.577 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds