Wall clock time and date at job start Tue Mar 31 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46984 * 2 1 4 4 N 1.46498 * 109.46987 * 239.99999 * 2 1 3 5 5 C 1.34782 * 119.99478 * 85.00249 * 4 2 1 6 6 S 1.71198 * 120.00375 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99339 * 180.02562 * 5 4 2 8 8 N 1.40101 * 120.00166 * 359.97438 * 7 5 4 9 9 C 1.29760 * 119.99700 * 180.02562 * 8 7 5 10 10 C 1.47496 * 119.99889 * 180.02562 * 9 8 7 11 11 C 1.39759 * 120.12011 * 359.72446 * 10 9 8 12 12 C 1.37974 * 119.97704 * 179.76895 * 11 10 9 13 13 C 1.38255 * 120.23076 * 0.52704 * 12 11 10 14 14 C 1.38978 * 120.24572 * 359.70634 * 13 12 11 15 15 O 1.35766 * 119.99197 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00133 * 174.48264 * 15 14 13 17 17 H 1.07998 * 120.00010 * 5.05459 * 16 15 14 18 18 C 1.38655 * 120.00127 * 185.06071 * 16 15 14 19 19 N 1.31555 * 119.99936 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00126 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46983 * 59.99773 * 20 18 16 22 22 H 1.48496 * 109.47210 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46824 * 299.99893 * 20 18 16 24 24 C 1.38611 * 120.01709 * 0.04072 * 14 13 12 25 25 C 1.53007 * 109.47019 * 119.99997 * 2 1 3 26 26 C 1.52997 * 117.49664 * 248.62084 * 25 2 1 27 27 C 1.53002 * 117.49383 * 179.97438 * 25 2 1 28 28 H 1.09007 * 109.47277 * 299.99707 * 1 2 3 29 29 H 1.08994 * 109.47497 * 59.99885 * 1 2 3 30 30 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00269 * 264.99951 * 4 2 1 32 32 H 0.97002 * 119.99232 * 180.02562 * 7 5 4 33 33 H 1.07999 * 119.99933 * 0.02562 * 9 8 7 34 34 H 1.08001 * 120.01405 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.88832 * 180.23811 * 12 11 10 36 36 H 1.08000 * 119.87839 * 179.71752 * 13 12 11 37 37 H 0.96997 * 120.00045 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.11525 * 180.02562 * 24 14 13 39 39 H 1.08991 * 115.56178 * 34.31511 * 25 2 1 40 40 H 1.08999 * 117.50290 * 359.97438 * 26 25 2 41 41 H 1.09001 * 117.49450 * 145.02849 * 26 25 2 42 42 H 1.09001 * 117.49507 * 214.97548 * 27 25 2 43 43 H 1.08998 * 117.50154 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 16 1.7393 1.6428 -2.4341 7 7 2.5957 -0.6536 -3.4577 8 7 2.9289 -2.0130 -3.3948 9 6 3.3614 -2.6246 -4.4544 10 6 3.7116 -4.0559 -4.3883 11 6 3.5840 -4.7543 -3.1845 12 6 3.9079 -6.0943 -3.1273 13 6 4.3693 -6.7477 -4.2549 14 6 4.5044 -6.0612 -5.4557 15 8 4.9574 -6.7081 -6.5601 16 6 4.9571 -6.0169 -7.7177 17 1 4.6843 -4.9719 -7.7225 18 6 5.3068 -6.6476 -8.9019 19 7 5.6395 -7.9204 -8.8959 20 14 5.3057 -5.6901 -10.5058 21 1 6.2611 -4.5575 -10.4068 22 1 5.7143 -6.5859 -11.6174 23 1 3.9415 -5.1655 -10.7681 24 6 4.1770 -4.7162 -5.5261 25 6 2.0400 -0.7213 1.2493 26 6 2.7419 0.1226 2.3151 27 6 3.5550 -0.8286 1.4340 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2490 -1.6317 -1.1526 32 1 2.6887 -0.1695 -4.2931 33 1 3.4649 -2.0857 -5.3845 34 1 3.2289 -4.2462 -2.3002 35 1 3.8051 -6.6335 -2.1972 36 1 4.6255 -7.7956 -4.2025 37 1 5.8838 -8.3617 -9.7244 38 1 4.2810 -4.1812 -6.4586 39 1 1.4311 -1.5584 1.5906 40 1 2.8407 1.1915 2.1262 41 1 2.5947 -0.1594 3.3577 42 1 3.9425 -1.7360 1.8971 43 1 4.1884 -0.3858 0.6653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751531323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:51 Heat of formation + Delta-G solvation = 76.855315 kcal Electronic energy + Delta-G solvation = -24636.148468 eV Core-core repulsion = 21003.091780 eV Total energy + Delta-G solvation = -3633.056688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.80393 -39.28554 -38.18891 -36.86160 -35.68683 -33.39517 -32.39743 -30.83058 -29.86776 -28.93542 -25.67568 -25.03064 -24.13740 -22.82052 -22.37746 -21.87088 -21.37759 -20.48109 -18.64277 -18.45811 -17.60966 -16.98793 -16.33852 -16.01714 -15.31454 -15.20664 -15.00507 -14.74456 -14.62440 -14.42814 -13.96863 -13.87455 -13.44181 -13.08460 -12.90844 -12.63171 -12.28530 -12.06031 -11.92483 -11.85470 -11.54696 -11.43384 -11.25640 -11.11144 -11.03990 -10.98206 -10.76044 -10.62813 -10.60295 -10.50675 -9.64438 -9.48123 -8.98082 -8.33453 -7.89218 -7.74403 -7.48429 -6.60171 -4.20998 0.62312 1.47626 1.52691 2.07276 2.42935 2.61870 2.63895 3.03590 3.04674 3.07766 3.49403 3.83022 4.09784 4.34849 4.44111 4.50190 4.58945 4.71808 4.82332 4.92349 5.03786 5.07103 5.13335 5.26949 5.28703 5.40197 5.51499 5.55787 5.61219 5.65934 5.73278 5.77118 5.86824 5.96524 6.01855 6.09540 6.31192 6.44243 6.49916 6.80365 6.92946 6.97643 6.99683 7.16754 7.47322 7.64320 7.81807 8.84460 9.50160 10.57006 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.002291 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.458153 B =12220.690889 C =13518.729151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 H 0.116 0.884 4 N -0.657 5.657 5 C 0.600 3.400 6 S -0.647 6.647 7 N -0.540 5.540 8 N -0.302 5.302 9 C 0.178 3.822 10 C -0.034 4.034 11 C -0.163 4.163 12 C -0.086 4.086 13 C -0.164 4.164 14 C 0.146 3.854 15 O -0.172 6.172 16 C -0.398 4.398 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.858 5.858 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.194 4.194 25 C -0.174 4.174 26 C -0.162 4.162 27 C -0.174 4.174 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.412 0.588 32 H 0.414 0.586 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.273 0.727 38 H 0.135 0.865 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 10.136 16.516 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 H 0.133 0.867 4 N -0.285 5.285 5 C 0.238 3.762 6 S -0.522 6.522 7 N -0.263 5.263 8 N -0.107 5.107 9 C -0.032 4.032 10 C -0.037 4.037 11 C -0.184 4.184 12 C -0.104 4.104 13 C -0.184 4.184 14 C 0.092 3.908 15 O -0.075 6.075 16 C -0.473 4.473 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.492 5.492 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.216 4.216 25 C -0.193 4.193 26 C -0.199 4.199 27 C -0.211 4.211 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.251 0.749 32 H 0.257 0.743 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.160 10.768 17.401 21.371 hybrid contribution 0.522 -0.414 -2.088 2.192 sum -5.638 10.355 15.313 19.326 Atomic orbital electron populations 1.22126 0.93603 1.02251 1.03863 1.21046 0.95142 0.97667 0.79821 0.86672 1.45125 1.61658 1.14201 1.07498 1.22005 0.79958 0.93152 0.81068 1.93572 1.72138 0.93808 1.92680 1.46264 1.62035 1.06602 1.11375 1.74661 1.16785 0.91736 1.27560 1.24731 0.89772 0.94842 0.93821 1.17964 1.02503 0.88551 0.94719 1.20751 1.06458 0.94570 0.96620 1.20637 0.98443 0.94137 0.97200 1.20476 1.06302 1.00321 0.91303 1.19179 0.92236 0.90484 0.88905 1.84017 1.70307 1.39290 1.13906 1.21243 1.48847 0.94940 0.82312 0.89069 1.25296 0.96171 0.96024 0.98800 1.70013 1.41022 1.09542 1.28598 0.85788 0.79167 0.78884 0.79687 1.19402 1.20155 1.19399 1.21227 1.06904 0.95179 0.98309 1.22605 0.95962 1.03130 0.97586 1.22996 1.03037 0.97936 0.95976 1.22961 0.92867 1.02101 1.03198 0.90849 0.90620 0.92644 0.74909 0.74256 0.85903 0.86654 0.86391 0.86010 0.91739 0.84770 0.87004 0.88201 0.88247 0.88324 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.41 37.16 0.35 -1.00 16 2 C 0.17 1.48 2.53 -67.93 -0.17 1.31 16 3 H 0.12 1.22 6.57 -51.93 -0.34 0.88 16 4 N -0.66 -6.68 4.92 -55.52 -0.27 -6.95 16 5 C 0.60 7.42 7.94 -86.91 -0.69 6.73 16 6 S -0.65 -9.89 28.14 -107.50 -3.02 -12.92 16 7 N -0.54 -6.27 6.26 29.97 0.19 -6.08 16 8 N -0.30 -3.62 9.46 32.16 0.30 -3.31 16 9 C 0.18 2.21 10.75 -14.66 -0.16 2.06 16 10 C -0.03 -0.53 5.87 -105.07 -0.62 -1.14 16 11 C -0.16 -2.38 9.58 -39.11 -0.37 -2.75 16 12 C -0.09 -1.29 10.02 -39.67 -0.40 -1.69 16 13 C -0.16 -2.98 9.98 -39.30 -0.39 -3.37 16 14 C 0.15 3.09 6.64 -39.17 -0.26 2.83 16 15 O -0.17 -4.46 9.76 0.01 0.00 -4.46 16 16 C -0.40 -10.15 9.48 30.89 0.29 -9.85 16 17 H 0.09 2.09 5.20 -52.49 -0.27 1.82 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -23.70 13.67 55.48 0.76 -22.94 16 20 Si 0.94 19.13 29.55 -169.99 -5.02 14.11 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.19 -3.55 8.90 -38.96 -0.35 -3.90 16 25 C -0.17 -1.21 5.22 -90.62 -0.47 -1.68 16 26 C -0.16 -1.02 10.18 -26.71 -0.27 -1.29 16 27 C -0.17 -1.25 10.13 -26.70 -0.27 -1.52 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.41 4.02 7.64 -40.82 -0.31 3.71 16 32 H 0.41 4.36 8.63 -182.60 -1.58 2.78 16 33 H 0.12 1.25 8.02 -52.49 -0.42 0.83 16 34 H 0.12 1.47 7.55 -52.49 -0.40 1.07 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 37 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.13 2.40 5.63 -52.48 -0.30 2.11 16 39 H 0.11 0.69 8.11 -51.93 -0.42 0.27 16 40 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -29.72 383.25 -12.11 -41.83 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.94 Total: 9.23 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.88 Total: -14.29 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.98 Total: -39.28 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.00 Total: -4.46 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -3.02 Total: -12.92 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.72 -12.11 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751531323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.689 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds