Wall clock time and date at job start Tue Mar 31 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46984 * 2 1 4 4 N 1.46498 * 109.46987 * 239.99999 * 2 1 3 5 5 C 1.34782 * 119.99478 * 85.00249 * 4 2 1 6 6 S 1.71198 * 120.00375 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99339 * 180.02562 * 5 4 2 8 8 N 1.40101 * 120.00166 * 359.97438 * 7 5 4 9 9 C 1.29760 * 119.99700 * 180.02562 * 8 7 5 10 10 C 1.47496 * 119.99889 * 180.02562 * 9 8 7 11 11 C 1.39759 * 120.12011 * 359.72446 * 10 9 8 12 12 C 1.37974 * 119.97704 * 179.76895 * 11 10 9 13 13 C 1.38255 * 120.23076 * 0.52704 * 12 11 10 14 14 C 1.38978 * 120.24572 * 359.70634 * 13 12 11 15 15 O 1.35766 * 119.99197 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00133 * 174.48264 * 15 14 13 17 17 H 1.07998 * 120.00010 * 5.05459 * 16 15 14 18 18 C 1.38655 * 120.00127 * 185.06071 * 16 15 14 19 19 N 1.31555 * 119.99936 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00126 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46983 * 59.99773 * 20 18 16 22 22 H 1.48496 * 109.47210 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46824 * 299.99893 * 20 18 16 24 24 C 1.38611 * 120.01709 * 0.04072 * 14 13 12 25 25 C 1.53007 * 109.47019 * 119.99997 * 2 1 3 26 26 C 1.52997 * 117.49664 * 248.62084 * 25 2 1 27 27 C 1.53002 * 117.49383 * 179.97438 * 25 2 1 28 28 H 1.09007 * 109.47277 * 299.99707 * 1 2 3 29 29 H 1.08994 * 109.47497 * 59.99885 * 1 2 3 30 30 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00269 * 264.99951 * 4 2 1 32 32 H 0.97002 * 119.99232 * 180.02562 * 7 5 4 33 33 H 1.07999 * 119.99933 * 0.02562 * 9 8 7 34 34 H 1.08001 * 120.01405 * 359.97438 * 11 10 9 35 35 H 1.07993 * 119.88832 * 180.23811 * 12 11 10 36 36 H 1.08000 * 119.87839 * 179.71752 * 13 12 11 37 37 H 0.96997 * 120.00045 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.11525 * 180.02562 * 24 14 13 39 39 H 1.08991 * 115.56178 * 34.31511 * 25 2 1 40 40 H 1.08999 * 117.50290 * 359.97438 * 26 25 2 41 41 H 1.09001 * 117.49450 * 145.02849 * 26 25 2 42 42 H 1.09001 * 117.49507 * 214.97548 * 27 25 2 43 43 H 1.08998 * 117.50154 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 16 1.7393 1.6428 -2.4341 7 7 2.5957 -0.6536 -3.4577 8 7 2.9289 -2.0130 -3.3948 9 6 3.3614 -2.6246 -4.4544 10 6 3.7116 -4.0559 -4.3883 11 6 3.5840 -4.7543 -3.1845 12 6 3.9079 -6.0943 -3.1273 13 6 4.3693 -6.7477 -4.2549 14 6 4.5044 -6.0612 -5.4557 15 8 4.9574 -6.7081 -6.5601 16 6 4.9571 -6.0169 -7.7177 17 1 4.6843 -4.9719 -7.7225 18 6 5.3068 -6.6476 -8.9019 19 7 5.6395 -7.9204 -8.8959 20 14 5.3057 -5.6901 -10.5058 21 1 6.2611 -4.5575 -10.4068 22 1 5.7143 -6.5859 -11.6174 23 1 3.9415 -5.1655 -10.7681 24 6 4.1770 -4.7162 -5.5261 25 6 2.0400 -0.7213 1.2493 26 6 2.7419 0.1226 2.3151 27 6 3.5550 -0.8286 1.4340 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2490 -1.6317 -1.1526 32 1 2.6887 -0.1695 -4.2931 33 1 3.4649 -2.0857 -5.3845 34 1 3.2289 -4.2462 -2.3002 35 1 3.8051 -6.6335 -2.1972 36 1 4.6255 -7.7956 -4.2025 37 1 5.8838 -8.3617 -9.7244 38 1 4.2810 -4.1812 -6.4586 39 1 1.4311 -1.5584 1.5906 40 1 2.8407 1.1915 2.1262 41 1 2.5947 -0.1594 3.3577 42 1 3.9425 -1.7360 1.8971 43 1 4.1884 -0.3858 0.6653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751531323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:50 Heat of formation + Delta-G solvation = 61.284566 kcal Electronic energy + Delta-G solvation = -24636.823666 eV Core-core repulsion = 21003.091780 eV Total energy + Delta-G solvation = -3633.731886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.88139 -40.56736 -39.10438 -38.22200 -36.61019 -34.52344 -34.08140 -31.89389 -30.96039 -30.29116 -27.39401 -26.10893 -25.00942 -23.62100 -23.30470 -23.15114 -22.13425 -21.62687 -20.02054 -19.52131 -18.89899 -18.36418 -17.21888 -16.96088 -16.76783 -16.26234 -15.98416 -15.94850 -15.83271 -15.52690 -15.35684 -15.25395 -14.42975 -14.31151 -14.18815 -13.60374 -13.53631 -13.28382 -12.88740 -12.69901 -12.66692 -12.54258 -12.43249 -12.35842 -12.25459 -12.15199 -11.98349 -11.64013 -11.33824 -11.27665 -11.18411 -10.80766 -10.44673 -9.53731 -9.14222 -8.93864 -8.92698 -8.44801 -6.13111 -0.50730 0.36152 0.44989 0.69831 1.38388 1.40040 1.42620 1.50185 1.53117 1.76194 2.18762 2.86611 2.91806 3.18611 3.44806 3.48358 3.53703 3.82012 3.87440 4.04620 4.14236 4.19356 4.25380 4.32247 4.37863 4.49683 4.52613 4.65712 4.78141 4.79968 4.90096 5.01420 5.02944 5.09692 5.09844 5.15822 5.17092 5.23691 5.33999 5.43697 5.59750 5.64281 5.65221 6.02136 6.09223 6.11359 6.63366 7.00315 7.79596 8.77726 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.002291 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.458153 B =12220.690889 C =13518.729151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.097 0.903 4 N -0.641 5.641 5 C 0.610 3.390 6 S -0.705 6.705 7 N -0.534 5.534 8 N -0.290 5.290 9 C 0.175 3.825 10 C -0.029 4.029 11 C -0.143 4.143 12 C -0.074 4.074 13 C -0.177 4.177 14 C 0.109 3.891 15 O -0.229 6.229 16 C -0.411 4.411 17 H 0.107 0.893 18 C -0.021 4.021 19 N -0.920 5.920 20 Si 1.013 2.987 21 H -0.257 1.257 22 H -0.277 1.277 23 H -0.257 1.257 24 C -0.199 4.199 25 C -0.170 4.170 26 C -0.156 4.156 27 C -0.180 4.180 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.418 0.582 32 H 0.420 0.580 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.118 0.882 37 H 0.271 0.729 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 11.587 19.001 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.063 3.937 3 H 0.115 0.885 4 N -0.267 5.267 5 C 0.246 3.754 6 S -0.580 6.580 7 N -0.257 5.257 8 N -0.096 5.096 9 C -0.034 4.034 10 C -0.032 4.032 11 C -0.164 4.164 12 C -0.092 4.092 13 C -0.197 4.197 14 C 0.058 3.942 15 O -0.136 6.136 16 C -0.487 4.487 17 H 0.125 0.875 18 C -0.219 4.219 19 N -0.558 5.558 20 Si 0.833 3.167 21 H -0.181 1.181 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.220 4.220 25 C -0.188 4.188 26 C -0.193 4.193 27 C -0.217 4.217 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.258 0.742 32 H 0.265 0.735 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.176 0.824 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.308 12.244 19.962 24.532 hybrid contribution 0.756 -0.750 -2.421 2.645 sum -6.551 11.494 17.541 21.971 Atomic orbital electron populations 1.22072 0.93013 1.02733 1.03456 1.21122 0.95510 0.96994 0.80104 0.88489 1.45240 1.60014 1.14327 1.07120 1.21625 0.79895 0.92122 0.81765 1.93717 1.74426 0.96620 1.93278 1.46146 1.61619 1.06408 1.11513 1.74568 1.15817 0.91737 1.27474 1.24599 0.90089 0.93618 0.95144 1.18078 1.01213 0.89990 0.93902 1.21242 1.03589 0.94371 0.97195 1.21067 0.96254 0.94486 0.97397 1.20744 1.06799 1.00613 0.91563 1.19738 0.93682 0.92025 0.88731 1.83985 1.73583 1.40948 1.15071 1.21765 1.48357 0.95755 0.82838 0.87530 1.26503 0.95928 0.97007 1.02481 1.70166 1.44499 1.11734 1.29365 0.84718 0.79795 0.77494 0.74741 1.18095 1.20224 1.18129 1.21268 1.07033 0.94255 0.99490 1.22567 0.95939 1.03600 0.96737 1.23078 1.01972 0.97592 0.96684 1.22960 0.92654 1.02801 1.03264 0.89304 0.93038 0.91610 0.74176 0.73497 0.83431 0.83496 0.82389 0.86354 0.91954 0.84980 0.85386 0.88715 0.86511 0.87224 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.41 71.98 0.68 -1.59 16 2 C 0.17 2.58 2.53 44.99 0.11 2.69 16 3 H 0.10 1.94 6.57 -2.39 -0.02 1.93 16 4 N -0.64 -11.30 4.92 -329.56 -1.62 -12.92 16 5 C 0.61 13.84 7.94 179.05 1.42 15.27 16 6 S -0.71 -21.13 28.14 -56.49 -1.59 -22.72 16 7 N -0.53 -10.89 6.26 -59.11 -0.37 -11.26 16 8 N -0.29 -5.84 9.46 -52.15 -0.49 -6.34 16 9 C 0.18 3.75 10.75 87.44 0.94 4.68 16 10 C -0.03 -0.80 5.87 -20.16 -0.12 -0.92 16 11 C -0.14 -3.57 9.58 22.57 0.22 -3.36 16 12 C -0.07 -1.98 10.02 22.21 0.22 -1.76 16 13 C -0.18 -6.37 9.98 22.45 0.22 -6.15 16 14 C 0.11 4.70 6.64 22.54 0.15 4.85 16 15 O -0.23 -12.55 9.76 -22.89 -0.22 -12.77 16 16 C -0.41 -21.87 9.48 67.92 0.64 -21.23 16 17 H 0.11 5.02 5.20 -2.91 -0.02 5.00 16 18 C -0.02 -1.14 5.49 84.83 0.47 -0.67 16 19 N -0.92 -53.79 13.67 21.61 0.30 -53.50 16 20 Si 1.01 40.16 29.55 68.60 2.03 42.19 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 C -0.20 -7.14 8.90 22.67 0.20 -6.94 16 25 C -0.17 -1.83 5.22 -10.79 -0.06 -1.88 16 26 C -0.16 -1.54 10.18 30.61 0.31 -1.22 16 27 C -0.18 -2.08 10.13 30.61 0.31 -1.77 16 28 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.05 1.03 7.48 -2.39 -0.02 1.02 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.42 6.55 7.64 -92.71 -0.71 5.85 16 32 H 0.42 7.79 8.63 -213.32 -1.84 5.95 16 33 H 0.15 2.48 8.02 -2.91 -0.02 2.45 16 34 H 0.15 2.84 7.55 -2.91 -0.02 2.82 16 35 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.13 4.71 5.63 -2.91 -0.02 4.69 16 39 H 0.13 1.03 8.11 -2.39 -0.02 1.01 16 40 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 41 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.72 383.25 2.26 -67.46 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -1.49 Total: 29.87 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.73 Total: -20.01 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -2.19 Total: -84.01 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.22 Total: -12.77 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: -21.13 SS G_CDS: -1.59 Total: -22.72 kcal Total: -69.72 2.26 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751531323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.747 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds