Wall clock time and date at job start Tue Mar 31 2020 18:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46641 * 2 1 4 4 N 1.46496 * 109.46915 * 120.00013 * 2 1 3 5 5 C 1.34777 * 120.00205 * 279.10874 * 4 2 1 6 6 S 1.71196 * 120.00073 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.40097 * 120.00074 * 0.02562 * 7 5 4 9 9 C 1.29835 * 119.99871 * 180.02562 * 8 7 5 10 10 C 1.47362 * 119.99929 * 180.02562 * 9 8 7 11 11 C 1.39809 * 120.08424 * 179.97438 * 10 9 8 12 12 C 1.37719 * 119.90853 * 180.02562 * 11 10 9 13 13 C 1.39077 * 120.09113 * 0.02562 * 12 11 10 14 14 O 1.35655 * 119.91641 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99677 * 5.82275 * 14 13 12 16 16 H 1.08002 * 120.00420 * 354.91372 * 15 14 13 17 17 C 1.38630 * 119.99754 * 174.91807 * 15 14 13 18 18 N 1.31569 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00009 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47332 * 59.99657 * 19 17 15 21 21 H 1.48500 * 109.47256 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46969 * 299.99795 * 19 17 15 23 23 C 1.39084 * 120.17128 * 0.25546 * 13 12 11 24 24 C 1.37723 * 120.08728 * 359.48197 * 23 13 12 25 25 C 1.52997 * 109.47156 * 240.00255 * 2 1 3 26 26 C 1.52995 * 117.49774 * 124.06437 * 25 2 1 27 27 C 1.53000 * 60.00194 * 252.50775 * 26 25 2 28 28 H 1.09005 * 109.47060 * 299.99724 * 1 2 3 29 29 H 1.08998 * 109.47126 * 59.99905 * 1 2 3 30 30 H 1.08999 * 109.47364 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00212 * 99.11070 * 4 2 1 32 32 H 0.97007 * 119.99669 * 180.02562 * 7 5 4 33 33 H 1.08003 * 120.00091 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.04878 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.95680 * 179.97438 * 12 11 10 36 36 H 0.97004 * 119.99949 * 180.02562 * 18 17 15 37 37 H 1.07997 * 119.95296 * 179.72413 * 23 13 12 38 38 H 1.07997 * 120.04041 * 180.23761 * 24 23 13 39 39 H 1.08996 * 115.54778 * 269.77178 * 25 2 1 40 40 H 1.08994 * 117.50040 * 359.97438 * 26 25 2 41 41 H 1.09005 * 117.49529 * 145.02297 * 26 25 2 42 42 H 1.08999 * 117.50418 * 252.51665 * 27 26 25 43 43 H 1.08999 * 117.49536 * 107.48487 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.0687 -0.0410 2.3760 6 16 1.5615 1.5910 2.4770 7 7 2.5184 -0.6763 3.4763 8 7 2.9340 -2.0116 3.3935 9 6 3.3667 -2.6237 4.4536 10 6 3.8043 -4.0281 4.3665 11 6 4.2711 -4.6888 5.5068 12 6 4.6797 -6.0012 5.4211 13 6 4.6290 -6.6691 4.2023 14 8 5.0328 -7.9617 4.1219 15 6 5.3566 -8.5747 5.2780 16 1 5.3677 -8.0149 6.2015 17 6 5.6756 -9.9238 5.2815 18 7 5.6618 -10.6060 4.1565 19 14 6.1250 -10.7733 6.8833 20 1 4.9886 -10.6708 7.8338 21 1 6.4209 -12.2042 6.6188 22 1 7.3221 -10.1201 7.4710 23 6 4.1707 -6.0136 3.0645 24 6 3.7553 -4.7029 3.1430 25 6 2.0400 -0.7212 -1.2492 26 6 2.9922 0.0462 -2.1687 27 6 1.5497 -0.2145 -2.6071 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.3053 -1.6154 1.1391 32 1 2.5543 -0.2088 4.3256 33 1 3.4067 -2.1033 5.3992 34 1 4.3121 -4.1704 6.4534 35 1 5.0409 -6.5122 6.3014 36 1 5.8846 -11.5501 4.1590 37 1 4.1370 -6.5343 2.1190 38 1 3.3960 -4.1958 2.2598 39 1 2.2004 -1.7937 -1.1403 40 1 3.2549 1.0649 -1.8838 41 1 3.7793 -0.5216 -2.6648 42 1 1.3879 -0.9538 -3.3916 43 1 0.8638 0.6326 -2.6104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751532513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:55 Heat of formation + Delta-G solvation = 75.301621 kcal Electronic energy + Delta-G solvation = -24362.847585 eV Core-core repulsion = 20729.723523 eV Total energy + Delta-G solvation = -3633.124061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.69090 -39.32029 -38.17142 -37.00309 -35.64589 -33.17152 -32.48491 -30.56492 -30.22184 -28.79863 -25.89084 -25.13050 -23.87950 -22.65626 -22.43043 -21.94655 -21.10066 -20.45633 -18.59367 -18.39595 -17.87705 -17.15002 -16.46394 -15.95736 -15.17148 -15.04122 -14.79056 -14.64281 -14.47354 -14.44786 -14.00399 -13.78086 -13.72130 -13.05041 -12.90568 -12.70091 -12.37174 -12.11995 -11.96006 -11.71309 -11.52198 -11.38948 -11.36704 -11.17542 -11.01377 -10.96113 -10.78414 -10.66356 -10.40594 -10.39143 -9.65351 -9.35231 -8.96938 -8.52620 -7.98120 -7.68200 -7.33113 -6.76307 -4.31988 0.78657 1.58866 1.63002 1.99399 2.53962 2.68833 2.78693 2.96524 2.99606 3.01092 3.44217 3.72490 4.21200 4.33319 4.54290 4.59486 4.62945 4.79319 4.80856 4.91833 4.98363 5.12124 5.15116 5.29811 5.35801 5.43164 5.46298 5.55604 5.63792 5.69893 5.78749 5.83297 5.90835 6.07884 6.11253 6.14972 6.34879 6.47070 6.58750 6.75723 6.92254 6.98986 7.04658 7.12597 7.46625 7.67999 7.81606 8.67737 9.32340 10.39627 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002027 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.884844 B =13812.082496 C =15064.335045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.111 0.889 4 N -0.658 5.658 5 C 0.601 3.399 6 S -0.657 6.657 7 N -0.538 5.538 8 N -0.330 5.330 9 C 0.193 3.807 10 C -0.187 4.187 11 C -0.026 4.026 12 C -0.241 4.241 13 C 0.171 3.829 14 O -0.158 6.158 15 C -0.394 4.394 16 H 0.098 0.902 17 C 0.042 3.958 18 N -0.848 5.848 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.202 4.202 24 C -0.021 4.021 25 C -0.171 4.171 26 C -0.175 4.175 27 C -0.164 4.164 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.134 0.866 36 H 0.276 0.724 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 13.994 -5.600 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.068 3.932 3 H 0.129 0.871 4 N -0.286 5.286 5 C 0.239 3.761 6 S -0.532 6.532 7 N -0.259 5.259 8 N -0.139 5.139 9 C -0.013 4.013 10 C -0.192 4.192 11 C -0.046 4.046 12 C -0.261 4.261 13 C 0.113 3.887 14 O -0.058 6.058 15 C -0.469 4.469 16 H 0.116 0.884 17 C -0.165 4.165 18 N -0.481 5.481 19 Si 0.769 3.231 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.221 4.221 24 C -0.042 4.042 25 C -0.190 4.190 26 C -0.212 4.212 27 C -0.202 4.202 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.250 0.750 32 H 0.253 0.747 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.710 14.553 -6.972 17.118 hybrid contribution 0.818 -1.372 2.064 2.609 sum -4.892 13.182 -4.909 14.893 Atomic orbital electron populations 1.22173 0.93740 1.02326 1.03893 1.20942 0.95037 0.97309 0.79900 0.87091 1.45038 1.61180 1.16060 1.06362 1.21890 0.80533 0.92513 0.81152 1.93519 1.69605 0.96973 1.93120 1.46177 1.60629 1.09083 1.10033 1.74736 1.19065 0.92338 1.27731 1.24463 0.89119 0.94249 0.93485 1.17741 1.15457 0.90717 0.95313 1.20816 0.93898 0.93704 0.96218 1.21063 1.10727 0.95514 0.98794 1.19601 0.90109 0.85638 0.93311 1.83936 1.68636 1.18970 1.34235 1.21440 1.47463 0.92830 0.85167 0.88432 1.25419 0.96213 0.95374 0.99454 1.70026 1.42284 1.09497 1.26248 0.85696 0.79456 0.78429 0.79476 1.19170 1.20012 1.19173 1.20178 1.08970 0.95285 0.97710 1.20771 0.94487 0.92774 0.96147 1.22461 1.05704 0.99766 0.91075 1.23100 0.93405 1.01654 1.03028 1.22964 0.97577 1.03503 0.96142 0.90314 0.91083 0.92657 0.74960 0.74657 0.86815 0.86643 0.84873 0.91382 0.86008 0.86196 0.87237 0.88307 0.88510 0.88354 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.13 37.16 0.34 -1.16 16 2 C 0.17 1.64 2.60 -67.93 -0.18 1.47 16 3 H 0.11 1.23 6.75 -51.93 -0.35 0.88 16 4 N -0.66 -7.13 5.08 -55.53 -0.28 -7.41 16 5 C 0.60 7.68 7.89 -86.92 -0.69 7.00 16 6 S -0.66 -10.21 27.77 -107.50 -2.99 -13.20 16 7 N -0.54 -6.29 6.26 29.96 0.19 -6.10 16 8 N -0.33 -3.98 9.46 32.14 0.30 -3.67 16 9 C 0.19 2.24 10.75 -14.68 -0.16 2.08 16 10 C -0.19 -2.68 5.87 -105.01 -0.62 -3.30 16 11 C -0.03 -0.38 9.78 -39.18 -0.38 -0.76 16 12 C -0.24 -4.42 9.15 -39.46 -0.36 -4.78 16 13 C 0.17 3.61 6.65 -38.96 -0.26 3.35 16 14 O -0.16 -4.04 9.75 0.40 0.00 -4.04 16 15 C -0.39 -9.85 9.48 30.88 0.29 -9.55 16 16 H 0.10 2.20 5.19 -52.49 -0.27 1.93 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.85 -22.80 13.67 55.48 0.76 -22.04 16 19 Si 0.95 18.51 29.55 -169.99 -5.02 13.49 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.20 -3.71 9.97 -39.46 -0.39 -4.10 16 24 C -0.02 -0.33 9.57 -39.18 -0.37 -0.71 16 25 C -0.17 -1.33 5.41 -90.62 -0.49 -1.83 16 26 C -0.17 -1.27 10.18 -26.73 -0.27 -1.54 16 27 C -0.16 -1.07 9.70 -26.73 -0.26 -1.33 16 28 H 0.08 0.90 7.02 -51.93 -0.36 0.54 16 29 H 0.07 0.54 7.02 -51.93 -0.36 0.18 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.41 4.28 7.50 -40.82 -0.31 3.97 16 32 H 0.41 4.25 8.63 -182.59 -1.58 2.67 16 33 H 0.11 0.99 8.02 -52.48 -0.42 0.57 16 34 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.13 2.42 5.62 -52.48 -0.30 2.12 16 36 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.12 1.63 7.55 -52.49 -0.40 1.23 16 39 H 0.11 0.84 7.99 -51.93 -0.42 0.42 16 40 H 0.10 0.73 8.03 -51.93 -0.42 0.32 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.60 7.32 -51.93 -0.38 0.22 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -29.07 379.99 -12.01 -41.08 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.81 Total: 10.37 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.89 Total: -14.20 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.97 Total: -39.23 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.00 Total: -4.04 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -2.99 Total: -13.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.07 -12.01 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751532513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.384 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds