Wall clock time and date at job start Tue Mar 31 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46641 * 2 1 4 4 N 1.46496 * 109.46915 * 120.00013 * 2 1 3 5 5 C 1.34777 * 120.00205 * 279.10874 * 4 2 1 6 6 S 1.71196 * 120.00073 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.40097 * 120.00074 * 0.02562 * 7 5 4 9 9 C 1.29835 * 119.99871 * 180.02562 * 8 7 5 10 10 C 1.47362 * 119.99929 * 180.02562 * 9 8 7 11 11 C 1.39809 * 120.08424 * 179.97438 * 10 9 8 12 12 C 1.37719 * 119.90853 * 180.02562 * 11 10 9 13 13 C 1.39077 * 120.09113 * 0.02562 * 12 11 10 14 14 O 1.35655 * 119.91641 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99677 * 5.82275 * 14 13 12 16 16 H 1.08002 * 120.00420 * 354.91372 * 15 14 13 17 17 C 1.38630 * 119.99754 * 174.91807 * 15 14 13 18 18 N 1.31569 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00009 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47332 * 59.99657 * 19 17 15 21 21 H 1.48500 * 109.47256 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46969 * 299.99795 * 19 17 15 23 23 C 1.39084 * 120.17128 * 0.25546 * 13 12 11 24 24 C 1.37723 * 120.08728 * 359.48197 * 23 13 12 25 25 C 1.52997 * 109.47156 * 240.00255 * 2 1 3 26 26 C 1.52995 * 117.49774 * 124.06437 * 25 2 1 27 27 C 1.53000 * 60.00194 * 252.50775 * 26 25 2 28 28 H 1.09005 * 109.47060 * 299.99724 * 1 2 3 29 29 H 1.08998 * 109.47126 * 59.99905 * 1 2 3 30 30 H 1.08999 * 109.47364 * 179.97438 * 1 2 3 31 31 H 0.97001 * 120.00212 * 99.11070 * 4 2 1 32 32 H 0.97007 * 119.99669 * 180.02562 * 7 5 4 33 33 H 1.08003 * 120.00091 * 359.97438 * 9 8 7 34 34 H 1.08004 * 120.04878 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.95680 * 179.97438 * 12 11 10 36 36 H 0.97004 * 119.99949 * 180.02562 * 18 17 15 37 37 H 1.07997 * 119.95296 * 179.72413 * 23 13 12 38 38 H 1.07997 * 120.04041 * 180.23761 * 24 23 13 39 39 H 1.08996 * 115.54778 * 269.77178 * 25 2 1 40 40 H 1.08994 * 117.50040 * 359.97438 * 26 25 2 41 41 H 1.09005 * 117.49529 * 145.02297 * 26 25 2 42 42 H 1.08999 * 117.50418 * 252.51665 * 27 26 25 43 43 H 1.08999 * 117.49536 * 107.48487 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.0687 -0.0410 2.3760 6 16 1.5615 1.5910 2.4770 7 7 2.5184 -0.6763 3.4763 8 7 2.9340 -2.0116 3.3935 9 6 3.3667 -2.6237 4.4536 10 6 3.8043 -4.0281 4.3665 11 6 4.2711 -4.6888 5.5068 12 6 4.6797 -6.0012 5.4211 13 6 4.6290 -6.6691 4.2023 14 8 5.0328 -7.9617 4.1219 15 6 5.3566 -8.5747 5.2780 16 1 5.3677 -8.0149 6.2015 17 6 5.6756 -9.9238 5.2815 18 7 5.6618 -10.6060 4.1565 19 14 6.1250 -10.7733 6.8833 20 1 4.9886 -10.6708 7.8338 21 1 6.4209 -12.2042 6.6188 22 1 7.3221 -10.1201 7.4710 23 6 4.1707 -6.0136 3.0645 24 6 3.7553 -4.7029 3.1430 25 6 2.0400 -0.7212 -1.2492 26 6 2.9922 0.0462 -2.1687 27 6 1.5497 -0.2145 -2.6071 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.3053 -1.6154 1.1391 32 1 2.5543 -0.2088 4.3256 33 1 3.4067 -2.1033 5.3992 34 1 4.3121 -4.1704 6.4534 35 1 5.0409 -6.5122 6.3014 36 1 5.8846 -11.5501 4.1590 37 1 4.1370 -6.5343 2.1190 38 1 3.3960 -4.1958 2.2598 39 1 2.2004 -1.7937 -1.1403 40 1 3.2549 1.0649 -1.8838 41 1 3.7793 -0.5216 -2.6648 42 1 1.3879 -0.9538 -3.3916 43 1 0.8638 0.6326 -2.6104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751532513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:54 Heat of formation + Delta-G solvation = 59.910361 kcal Electronic energy + Delta-G solvation = -24363.515000 eV Core-core repulsion = 20729.723523 eV Total energy + Delta-G solvation = -3633.791476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.87963 -40.52480 -39.11313 -38.30308 -36.60581 -34.50060 -33.90545 -31.94309 -31.17740 -30.03028 -27.55503 -26.06123 -24.93117 -23.78301 -23.28306 -23.05515 -21.93969 -21.57972 -20.02084 -19.46935 -19.04317 -18.57708 -17.35904 -17.00642 -16.48816 -16.25968 -15.99637 -15.95399 -15.61120 -15.30295 -15.23116 -15.14358 -14.59513 -14.50672 -14.10480 -13.74696 -13.57387 -13.25238 -13.04286 -12.83880 -12.72923 -12.59016 -12.41138 -12.28063 -12.20206 -12.15611 -11.88546 -11.49404 -11.36283 -11.18571 -11.08801 -10.83294 -10.18395 -9.86909 -9.19783 -8.88915 -8.72511 -8.51372 -6.18222 -0.32448 0.44414 0.52873 0.60498 1.37721 1.41325 1.52544 1.53250 1.58082 1.85207 2.16095 2.84376 2.84733 3.16880 3.42739 3.53861 3.65266 3.88918 3.94668 4.05372 4.13006 4.14186 4.20445 4.35715 4.42616 4.48316 4.54307 4.68462 4.78605 4.84059 4.92116 4.95716 5.01127 5.05989 5.14891 5.19505 5.24929 5.27366 5.33546 5.47710 5.55562 5.64230 5.67861 5.98023 6.07547 6.12084 6.81169 6.93213 7.69694 8.70359 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.002027 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.884844 B =13812.082496 C =15064.335045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 H 0.096 0.904 4 N -0.646 5.646 5 C 0.610 3.390 6 S -0.710 6.710 7 N -0.529 5.529 8 N -0.326 5.326 9 C 0.197 3.803 10 C -0.160 4.160 11 C -0.015 4.015 12 C -0.250 4.250 13 C 0.138 3.862 14 O -0.221 6.221 15 C -0.414 4.414 16 H 0.111 0.889 17 C -0.020 4.020 18 N -0.915 5.915 19 Si 1.018 2.982 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.255 1.255 23 C -0.214 4.214 24 C -0.019 4.019 25 C -0.177 4.177 26 C -0.180 4.180 27 C -0.153 4.153 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.416 0.584 32 H 0.419 0.581 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.130 0.870 36 H 0.274 0.726 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 16.820 -4.629 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.070 3.930 3 H 0.114 0.886 4 N -0.273 5.273 5 C 0.245 3.755 6 S -0.585 6.585 7 N -0.251 5.251 8 N -0.134 5.134 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.035 4.035 12 C -0.269 4.269 13 C 0.084 3.916 14 O -0.125 6.125 15 C -0.490 4.490 16 H 0.129 0.871 17 C -0.219 4.219 18 N -0.552 5.552 19 Si 0.837 3.163 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.179 1.179 23 C -0.234 4.234 24 C -0.039 4.039 25 C -0.196 4.196 26 C -0.217 4.217 27 C -0.191 4.191 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.256 0.744 32 H 0.264 0.736 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.523 17.452 -6.011 19.577 hybrid contribution 0.861 -1.662 1.602 2.464 sum -5.662 15.790 -4.409 17.344 Atomic orbital electron populations 1.22109 0.93330 1.02472 1.03592 1.20980 0.95249 0.96674 0.80112 0.88620 1.45163 1.59799 1.16139 1.06169 1.21558 0.80435 0.91608 0.81873 1.93668 1.71702 0.99539 1.93624 1.46023 1.60134 1.08785 1.10170 1.74677 1.17707 0.92432 1.28566 1.24506 0.88476 0.92753 0.95323 1.18068 1.11965 0.91889 0.94435 1.21233 0.91768 0.92142 0.98363 1.21232 1.10972 0.97076 0.97636 1.20184 0.91009 0.84992 0.95369 1.83923 1.72668 1.21138 1.34774 1.21888 1.47773 0.93478 0.85825 0.87140 1.26617 0.96254 0.95980 1.03023 1.70175 1.46522 1.09679 1.28847 0.84649 0.79660 0.76939 0.75069 1.17964 1.20082 1.17924 1.20369 1.09387 0.96591 0.97017 1.21071 0.93445 0.91555 0.97854 1.22404 1.06669 0.99775 0.90751 1.23147 0.94107 1.01418 1.02993 1.23060 0.96996 1.03690 0.95310 0.92577 0.89458 0.92176 0.74359 0.73560 0.82369 0.81878 0.85205 0.91680 0.86670 0.83854 0.86778 0.88770 0.87953 0.87174 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.13 71.98 0.66 -1.95 16 2 C 0.17 2.98 2.60 44.99 0.12 3.09 16 3 H 0.10 2.01 6.75 -2.39 -0.02 1.99 16 4 N -0.65 -12.31 5.08 -329.58 -1.68 -13.99 16 5 C 0.61 13.97 7.89 179.05 1.41 15.38 16 6 S -0.71 -21.12 27.77 -56.49 -1.57 -22.69 16 7 N -0.53 -10.22 6.26 -59.12 -0.37 -10.59 16 8 N -0.33 -6.25 9.46 -52.22 -0.49 -6.75 16 9 C 0.20 3.40 10.75 87.39 0.94 4.34 16 10 C -0.16 -3.84 5.87 -20.12 -0.12 -3.96 16 11 C -0.01 -0.38 9.78 22.53 0.22 -0.16 16 12 C -0.25 -8.91 9.15 22.35 0.20 -8.71 16 13 C 0.14 5.98 6.65 22.67 0.15 6.14 16 14 O -0.22 -12.08 9.75 -21.47 -0.21 -12.29 16 15 C -0.41 -21.90 9.48 67.91 0.64 -21.26 16 16 H 0.11 5.18 5.19 -2.91 -0.02 5.17 16 17 C -0.02 -1.05 5.49 84.83 0.47 -0.59 16 18 N -0.92 -52.92 13.67 21.61 0.30 -52.63 16 19 Si 1.02 39.36 29.55 68.60 2.03 41.39 16 20 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 21 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 C -0.21 -7.92 9.97 22.35 0.22 -7.69 16 24 C -0.02 -0.54 9.57 22.53 0.22 -0.33 16 25 C -0.18 -2.35 5.41 -10.80 -0.06 -2.41 16 26 C -0.18 -2.26 10.18 30.59 0.31 -1.94 16 27 C -0.15 -1.61 9.70 30.60 0.30 -1.31 16 28 H 0.06 1.22 7.02 -2.38 -0.02 1.20 16 29 H 0.09 1.15 7.02 -2.39 -0.02 1.14 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.42 7.28 7.50 -92.71 -0.70 6.59 16 32 H 0.42 6.87 8.63 -213.31 -1.84 5.03 16 33 H 0.16 1.53 8.02 -2.91 -0.02 1.51 16 34 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.13 4.67 5.62 -2.91 -0.02 4.66 16 36 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.14 3.37 7.55 -2.91 -0.02 3.35 16 39 H 0.11 1.44 7.99 -2.39 -0.02 1.42 16 40 H 0.09 1.27 8.03 -2.39 -0.02 1.25 16 41 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 1.00 7.32 -2.39 -0.02 0.99 16 Total: -1.00 -69.88 379.99 2.21 -67.66 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -1.47 Total: 31.23 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 5.68 Total: -21.35 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.24 Total: -83.95 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.21 Total: -12.29 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: -21.12 SS G_CDS: -1.57 Total: -22.69 kcal Total: -69.88 2.21 -67.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751532513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.574 kcal (2) G-P(sol) polarization free energy of solvation -69.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds