Wall clock time and date at job start Tue Mar 31 2020 18:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47179 * 2 1 4 4 N 1.46499 * 109.47277 * 239.99744 * 2 1 3 5 5 C 1.34780 * 120.00221 * 85.00205 * 4 2 1 6 6 S 1.71194 * 119.99640 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99858 * 179.97438 * 5 4 2 8 8 N 1.40093 * 120.00421 * 359.97438 * 7 5 4 9 9 C 1.29828 * 120.00202 * 179.97438 * 8 7 5 10 10 C 1.47364 * 120.00086 * 180.02562 * 9 8 7 11 11 C 1.39808 * 120.08827 * 359.72037 * 10 9 8 12 12 C 1.37717 * 119.91176 * 179.78526 * 11 10 9 13 13 C 1.39078 * 120.08550 * 0.47450 * 12 11 10 14 14 O 1.35662 * 119.90968 * 179.75998 * 13 12 11 15 15 C 1.34809 * 116.99864 * 174.46746 * 14 13 12 16 16 H 1.08004 * 119.99859 * 5.05271 * 15 14 13 17 17 C 1.38630 * 119.99872 * 185.05746 * 15 14 13 18 18 N 1.31566 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99696 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47551 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46868 * 120.00138 * 19 17 15 22 22 H 1.48499 * 109.46885 * 239.99761 * 19 17 15 23 23 C 1.39077 * 120.17741 * 359.77991 * 13 12 11 24 24 C 1.37716 * 120.08755 * 359.97438 * 23 13 12 25 25 C 1.53004 * 109.47134 * 119.99753 * 2 1 3 26 26 C 1.53000 * 117.50089 * 180.02562 * 25 2 1 27 27 C 1.52996 * 60.03228 * 107.47693 * 26 25 2 28 28 H 1.09006 * 109.46936 * 60.00634 * 1 2 3 29 29 H 1.09005 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47557 * 300.00229 * 1 2 3 31 31 H 0.97007 * 120.00117 * 264.99343 * 4 2 1 32 32 H 0.97004 * 119.99197 * 180.02562 * 7 5 4 33 33 H 1.08005 * 120.00253 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.03977 * 0.02856 * 11 10 9 35 35 H 1.07996 * 119.95898 * 180.23169 * 12 11 10 36 36 H 0.96996 * 119.99971 * 180.02562 * 18 17 15 37 37 H 1.07997 * 119.95753 * 179.97438 * 23 13 12 38 38 H 1.08005 * 120.04247 * 179.97438 * 24 23 13 39 39 H 1.08999 * 115.56197 * 34.30803 * 25 2 1 40 40 H 1.08998 * 117.50202 * 214.98251 * 26 25 2 41 41 H 1.09007 * 117.49810 * 359.97336 * 26 25 2 42 42 H 1.09000 * 117.49893 * 107.50314 * 27 26 25 43 43 H 1.09004 * 117.49507 * 252.51886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 16 1.7394 1.6425 -2.4342 7 7 2.5969 -0.6537 -3.4574 8 7 2.9311 -2.0127 -3.3941 9 6 3.3639 -2.6248 -4.4541 10 6 3.7149 -4.0545 -4.3877 11 6 3.5880 -4.7521 -3.1828 12 6 3.9129 -6.0892 -3.1260 13 6 4.3759 -6.7432 -4.2627 14 8 4.6995 -8.0592 -4.2015 15 6 5.0318 -8.6623 -5.3604 16 1 5.1116 -8.0818 -6.2677 17 6 5.2712 -10.0275 -5.3876 18 7 5.1734 -10.7346 -4.2825 19 14 5.7324 -10.8630 -6.9934 20 1 5.7746 -9.8541 -8.0822 21 1 7.0673 -11.4987 -6.8550 22 1 4.7215 -11.9007 -7.3197 23 6 4.5085 -6.0514 -5.4620 24 6 4.1810 -4.7154 -5.5282 25 6 2.0400 -0.7212 1.2493 26 6 3.5550 -0.8275 1.4347 27 6 2.7421 0.1232 2.3156 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2491 -1.6318 -1.1525 32 1 2.6899 -0.1696 -4.2928 33 1 3.4659 -2.0864 -5.3848 34 1 3.2321 -4.2440 -2.2988 35 1 3.8116 -6.6298 -2.1965 36 1 5.3413 -11.6898 -4.3014 37 1 4.8688 -6.5626 -6.3424 38 1 4.2846 -4.1789 -6.4598 39 1 1.4310 -1.5583 1.5907 40 1 3.9429 -1.7348 1.8977 41 1 4.1884 -0.3840 0.6664 42 1 2.5952 -0.1585 3.3583 43 1 2.8405 1.1922 2.1267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751532515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:59 Heat of formation + Delta-G solvation = 73.773302 kcal Electronic energy + Delta-G solvation = -24488.791510 eV Core-core repulsion = 20855.601176 eV Total energy + Delta-G solvation = -3633.190334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.70181 -39.31933 -38.11848 -36.96730 -35.55680 -33.19230 -32.49515 -30.56631 -30.42657 -28.80576 -25.87874 -24.82628 -23.80702 -22.72186 -22.41492 -21.93412 -21.32127 -20.44183 -18.53645 -18.40981 -17.88161 -17.10129 -16.29719 -15.97446 -15.30141 -14.99151 -14.87500 -14.78404 -14.56040 -14.46064 -13.98341 -13.77340 -13.37938 -13.05602 -12.85010 -12.70241 -12.24498 -12.03647 -11.96397 -11.85995 -11.53763 -11.40415 -11.37962 -11.25811 -10.98459 -10.94791 -10.68270 -10.62371 -10.53505 -10.39988 -9.64333 -9.36640 -8.97438 -8.52385 -7.98303 -7.68473 -7.32998 -6.76499 -4.32000 0.79076 1.59313 1.63241 1.99625 2.52925 2.68749 2.75751 2.96658 2.98469 3.03206 3.56709 3.72292 4.16629 4.33546 4.50904 4.60374 4.65622 4.78881 4.80933 4.91686 4.98661 5.11033 5.20057 5.33674 5.35171 5.42282 5.46553 5.58779 5.66733 5.69428 5.79583 5.83797 5.91097 6.06708 6.08005 6.15493 6.35273 6.47530 6.59029 6.76396 6.92659 6.99764 7.06630 7.13007 7.46874 7.68209 7.82078 8.67928 9.32687 10.39674 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.002070 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.698131 B =13521.560209 C =14630.393873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 H 0.115 0.885 4 N -0.658 5.658 5 C 0.601 3.399 6 S -0.660 6.660 7 N -0.538 5.538 8 N -0.329 5.329 9 C 0.192 3.808 10 C -0.187 4.187 11 C -0.021 4.021 12 C -0.202 4.202 13 C 0.172 3.828 14 O -0.159 6.159 15 C -0.393 4.393 16 H 0.099 0.901 17 C 0.042 3.958 18 N -0.848 5.848 19 Si 0.946 3.054 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.241 4.241 24 C -0.026 4.026 25 C -0.174 4.174 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.412 0.588 32 H 0.410 0.590 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.275 0.725 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 14.080 5.590 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.133 0.867 4 N -0.286 5.286 5 C 0.239 3.761 6 S -0.534 6.534 7 N -0.260 5.260 8 N -0.138 5.138 9 C -0.014 4.014 10 C -0.192 4.192 11 C -0.042 4.042 12 C -0.221 4.221 13 C 0.114 3.886 14 O -0.059 6.059 15 C -0.468 4.468 16 H 0.117 0.883 17 C -0.165 4.165 18 N -0.481 5.481 19 Si 0.770 3.230 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.261 4.261 24 C -0.047 4.047 25 C -0.193 4.193 26 C -0.211 4.211 27 C -0.200 4.200 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.253 0.747 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.493 14.644 6.952 16.821 hybrid contribution 0.769 -1.357 -2.058 2.582 sum -3.725 13.287 4.893 14.641 Atomic orbital electron populations 1.22125 0.93689 1.02227 1.03780 1.21021 0.95080 0.97621 0.79880 0.86743 1.45095 1.61783 1.14207 1.07465 1.21920 0.80082 0.93001 0.81136 1.93527 1.72858 0.94211 1.92842 1.46179 1.61783 1.06944 1.11050 1.74739 1.20166 0.91387 1.27469 1.24462 0.89099 0.94517 0.93292 1.17745 1.16057 0.89697 0.95694 1.20776 0.94527 0.92654 0.96208 1.20178 1.09378 0.94651 0.97920 1.19602 0.90389 0.85335 0.93311 1.83940 1.70305 1.17134 1.34480 1.21537 1.47795 0.91567 0.85920 0.88334 1.25422 0.96266 0.95319 0.99494 1.70041 1.42971 1.08039 1.27002 0.85564 0.78629 0.79382 0.79439 1.18807 1.19841 1.19837 1.21065 1.11025 0.94837 0.99157 1.20817 0.93977 0.93766 0.96100 1.22621 0.95985 1.03113 0.97581 1.22952 0.92882 1.02093 1.03154 1.22995 1.03136 0.97886 0.95983 0.90651 0.92656 0.90930 0.74885 0.74693 0.86840 0.86163 0.86005 0.91493 0.84868 0.86658 0.86999 0.88298 0.88649 0.88274 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.41 37.16 0.35 -1.09 16 2 C 0.17 1.59 2.53 -67.93 -0.17 1.42 16 3 H 0.11 1.27 6.57 -51.93 -0.34 0.93 16 4 N -0.66 -7.05 4.92 -55.52 -0.27 -7.32 16 5 C 0.60 7.62 7.94 -86.92 -0.69 6.93 16 6 S -0.66 -10.24 28.13 -107.50 -3.02 -13.27 16 7 N -0.54 -6.26 6.26 29.96 0.19 -6.08 16 8 N -0.33 -3.95 9.46 32.14 0.30 -3.64 16 9 C 0.19 2.23 10.75 -14.69 -0.16 2.07 16 10 C -0.19 -2.67 5.87 -105.01 -0.62 -3.29 16 11 C -0.02 -0.33 9.57 -39.19 -0.37 -0.70 16 12 C -0.20 -3.70 9.97 -39.46 -0.39 -4.09 16 13 C 0.17 3.61 6.65 -38.96 -0.26 3.35 16 14 O -0.16 -4.06 9.75 0.38 0.00 -4.06 16 15 C -0.39 -9.83 9.48 30.88 0.29 -9.53 16 16 H 0.10 2.24 5.19 -52.48 -0.27 1.97 16 17 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 18 N -0.85 -22.80 13.67 55.48 0.76 -22.04 16 19 Si 0.95 18.54 29.55 -169.99 -5.02 13.52 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.24 -4.42 9.15 -39.46 -0.36 -4.78 16 24 C -0.03 -0.38 9.78 -39.18 -0.38 -0.76 16 25 C -0.17 -1.34 5.23 -90.58 -0.47 -1.82 16 26 C -0.17 -1.38 10.12 -26.73 -0.27 -1.65 16 27 C -0.16 -1.13 10.18 -26.70 -0.27 -1.40 16 28 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.41 4.32 7.64 -40.82 -0.31 4.01 16 32 H 0.41 4.24 8.63 -182.60 -1.58 2.67 16 33 H 0.11 0.99 8.02 -52.48 -0.42 0.57 16 34 H 0.12 1.63 7.55 -52.49 -0.40 1.24 16 35 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.13 2.43 5.62 -52.49 -0.29 2.14 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 39 H 0.11 0.79 8.11 -51.93 -0.42 0.37 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.69 8.05 -51.93 -0.42 0.28 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -28.97 383.20 -12.11 -41.07 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.94 Total: 10.44 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.88 Total: -14.41 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.98 Total: -39.08 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: 0.00 Total: -4.06 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 16 Polarization: -10.24 SS G_CDS: -3.02 Total: -13.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.97 -12.11 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751532515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.847 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds