Wall clock time and date at job start Tue Mar 31 2020 18:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47179 * 2 1 4 4 N 1.46499 * 109.47277 * 239.99744 * 2 1 3 5 5 C 1.34780 * 120.00221 * 85.00205 * 4 2 1 6 6 S 1.71194 * 119.99640 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99858 * 179.97438 * 5 4 2 8 8 N 1.40093 * 120.00421 * 359.97438 * 7 5 4 9 9 C 1.29828 * 120.00202 * 179.97438 * 8 7 5 10 10 C 1.47364 * 120.00086 * 180.02562 * 9 8 7 11 11 C 1.39808 * 120.08827 * 359.72037 * 10 9 8 12 12 C 1.37717 * 119.91176 * 179.78526 * 11 10 9 13 13 C 1.39078 * 120.08550 * 0.47450 * 12 11 10 14 14 O 1.35662 * 119.90968 * 179.75998 * 13 12 11 15 15 C 1.34809 * 116.99864 * 174.46746 * 14 13 12 16 16 H 1.08004 * 119.99859 * 5.05271 * 15 14 13 17 17 C 1.38630 * 119.99872 * 185.05746 * 15 14 13 18 18 N 1.31566 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99696 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47551 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46868 * 120.00138 * 19 17 15 22 22 H 1.48499 * 109.46885 * 239.99761 * 19 17 15 23 23 C 1.39077 * 120.17741 * 359.77991 * 13 12 11 24 24 C 1.37716 * 120.08755 * 359.97438 * 23 13 12 25 25 C 1.53004 * 109.47134 * 119.99753 * 2 1 3 26 26 C 1.53000 * 117.50089 * 180.02562 * 25 2 1 27 27 C 1.52996 * 60.03228 * 107.47693 * 26 25 2 28 28 H 1.09006 * 109.46936 * 60.00634 * 1 2 3 29 29 H 1.09005 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47557 * 300.00229 * 1 2 3 31 31 H 0.97007 * 120.00117 * 264.99343 * 4 2 1 32 32 H 0.97004 * 119.99197 * 180.02562 * 7 5 4 33 33 H 1.08005 * 120.00253 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.03977 * 0.02856 * 11 10 9 35 35 H 1.07996 * 119.95898 * 180.23169 * 12 11 10 36 36 H 0.96996 * 119.99971 * 180.02562 * 18 17 15 37 37 H 1.07997 * 119.95753 * 179.97438 * 23 13 12 38 38 H 1.08005 * 120.04247 * 179.97438 * 24 23 13 39 39 H 1.08999 * 115.56197 * 34.30803 * 25 2 1 40 40 H 1.08998 * 117.50202 * 214.98251 * 26 25 2 41 41 H 1.09007 * 117.49810 * 359.97336 * 26 25 2 42 42 H 1.09000 * 117.49893 * 107.50314 * 27 26 25 43 43 H 1.09004 * 117.49507 * 252.51886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 16 1.7394 1.6425 -2.4342 7 7 2.5969 -0.6537 -3.4574 8 7 2.9311 -2.0127 -3.3941 9 6 3.3639 -2.6248 -4.4541 10 6 3.7149 -4.0545 -4.3877 11 6 3.5880 -4.7521 -3.1828 12 6 3.9129 -6.0892 -3.1260 13 6 4.3759 -6.7432 -4.2627 14 8 4.6995 -8.0592 -4.2015 15 6 5.0318 -8.6623 -5.3604 16 1 5.1116 -8.0818 -6.2677 17 6 5.2712 -10.0275 -5.3876 18 7 5.1734 -10.7346 -4.2825 19 14 5.7324 -10.8630 -6.9934 20 1 5.7746 -9.8541 -8.0822 21 1 7.0673 -11.4987 -6.8550 22 1 4.7215 -11.9007 -7.3197 23 6 4.5085 -6.0514 -5.4620 24 6 4.1810 -4.7154 -5.5282 25 6 2.0400 -0.7212 1.2493 26 6 3.5550 -0.8275 1.4347 27 6 2.7421 0.1232 2.3156 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2491 -1.6318 -1.1525 32 1 2.6899 -0.1696 -4.2928 33 1 3.4659 -2.0864 -5.3848 34 1 3.2321 -4.2440 -2.2988 35 1 3.8116 -6.6298 -2.1965 36 1 5.3413 -11.6898 -4.3014 37 1 4.8688 -6.5626 -6.3424 38 1 4.2846 -4.1789 -6.4598 39 1 1.4310 -1.5583 1.5907 40 1 3.9429 -1.7348 1.8977 41 1 4.1884 -0.3840 0.6664 42 1 2.5952 -0.1585 3.3583 43 1 2.8405 1.1922 2.1267 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751532515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:58 Heat of formation + Delta-G solvation = 58.615328 kcal Electronic energy + Delta-G solvation = -24489.448809 eV Core-core repulsion = 20855.601176 eV Total energy + Delta-G solvation = -3633.847633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87883 -40.53777 -39.09133 -38.27001 -36.51000 -34.50169 -33.92484 -31.94177 -31.37308 -30.05950 -27.55420 -25.81584 -24.79960 -23.78788 -23.36680 -23.04856 -22.12655 -21.60268 -20.01013 -19.43651 -19.07894 -18.54972 -17.19322 -16.99449 -16.50005 -16.27002 -15.98865 -15.84414 -15.79060 -15.59938 -15.31224 -15.14128 -14.51924 -14.27431 -14.10232 -13.60562 -13.57595 -13.29456 -12.89414 -12.83632 -12.75827 -12.58025 -12.44278 -12.39186 -12.20765 -12.08678 -11.95525 -11.48184 -11.33972 -11.19134 -11.17856 -10.87308 -10.19978 -9.86664 -9.19952 -8.89396 -8.72598 -8.51645 -6.18266 -0.31979 0.45025 0.53148 0.60767 1.37885 1.39482 1.52625 1.55387 1.57799 1.82734 2.15643 2.84535 2.91699 3.17110 3.42774 3.48092 3.65695 3.84631 3.91349 4.04732 4.13326 4.13542 4.20819 4.35749 4.46304 4.49653 4.54302 4.68921 4.76599 4.82217 4.91482 4.95915 5.00410 5.11325 5.15496 5.17027 5.22338 5.24329 5.33569 5.46743 5.55866 5.64465 5.67939 5.98422 6.07887 6.14079 6.81637 6.93294 7.69934 8.70598 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.002070 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.698131 B =13521.560209 C =14630.393873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.098 0.902 4 N -0.644 5.644 5 C 0.610 3.390 6 S -0.713 6.713 7 N -0.530 5.530 8 N -0.325 5.325 9 C 0.196 3.804 10 C -0.159 4.159 11 C -0.019 4.019 12 C -0.214 4.214 13 C 0.138 3.862 14 O -0.221 6.221 15 C -0.412 4.412 16 H 0.112 0.888 17 C -0.021 4.021 18 N -0.915 5.915 19 Si 1.018 2.982 20 H -0.246 1.246 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.250 4.250 24 C -0.015 4.015 25 C -0.172 4.172 26 C -0.180 4.180 27 C -0.154 4.154 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.417 0.583 32 H 0.419 0.581 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.274 0.726 37 H 0.130 0.870 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 16.935 4.738 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.064 3.936 3 H 0.116 0.884 4 N -0.271 5.271 5 C 0.245 3.755 6 S -0.589 6.589 7 N -0.252 5.252 8 N -0.133 5.133 9 C -0.011 4.011 10 C -0.163 4.163 11 C -0.039 4.039 12 C -0.233 4.233 13 C 0.085 3.915 14 O -0.126 6.126 15 C -0.488 4.488 16 H 0.129 0.871 17 C -0.219 4.219 18 N -0.553 5.553 19 Si 0.837 3.163 20 H -0.169 1.169 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.269 4.269 24 C -0.035 4.035 25 C -0.190 4.190 26 C -0.218 4.218 27 C -0.191 4.191 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.256 0.744 32 H 0.264 0.736 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.147 0.853 38 H 0.181 0.819 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.107 17.572 6.110 19.292 hybrid contribution 0.787 -1.653 -1.627 2.449 sum -4.320 15.919 4.484 17.093 Atomic orbital electron populations 1.22068 0.93099 1.02585 1.03474 1.21078 0.95438 0.96944 0.80097 0.88379 1.45216 1.60327 1.14280 1.07249 1.21574 0.80026 0.92032 0.81837 1.93677 1.74945 0.96845 1.93391 1.46025 1.61307 1.06665 1.11167 1.74680 1.18788 0.91538 1.28246 1.24502 0.88552 0.93015 0.95058 1.18068 1.12429 0.91052 0.94766 1.21069 0.93539 0.91423 0.97855 1.20366 1.09719 0.95997 0.97229 1.20181 0.91347 0.84665 0.95338 1.83926 1.74329 1.19262 1.35037 1.21964 1.48073 0.92198 0.86543 0.87129 1.26612 0.96346 0.95886 1.03069 1.70182 1.47246 1.08196 1.29628 0.84525 0.78077 0.78315 0.75346 1.16903 1.19621 1.19650 1.21224 1.11210 0.96433 0.98018 1.21230 0.91920 0.92249 0.98136 1.22585 0.95888 1.03585 0.96983 1.22940 0.92737 1.02737 1.03357 1.23079 1.01831 0.97633 0.96598 0.92858 0.91871 0.89374 0.74356 0.73615 0.82421 0.83853 0.86656 0.91693 0.85260 0.81923 0.85745 0.87601 0.90093 0.86636 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.41 71.98 0.68 -1.79 16 2 C 0.17 2.84 2.53 44.99 0.11 2.96 16 3 H 0.10 2.07 6.57 -2.38 -0.02 2.05 16 4 N -0.64 -12.15 4.92 -329.57 -1.62 -13.77 16 5 C 0.61 13.91 7.94 179.05 1.42 15.33 16 6 S -0.71 -21.26 28.13 -56.49 -1.59 -22.85 16 7 N -0.53 -10.22 6.26 -59.12 -0.37 -10.59 16 8 N -0.32 -6.22 9.46 -52.22 -0.49 -6.71 16 9 C 0.20 3.39 10.75 87.39 0.94 4.33 16 10 C -0.16 -3.83 5.87 -20.11 -0.12 -3.95 16 11 C -0.02 -0.53 9.57 22.53 0.22 -0.31 16 12 C -0.21 -7.88 9.97 22.35 0.22 -7.66 16 13 C 0.14 5.99 6.65 22.67 0.15 6.14 16 14 O -0.22 -12.09 9.75 -21.56 -0.21 -12.30 16 15 C -0.41 -21.79 9.48 67.91 0.64 -21.14 16 16 H 0.11 5.21 5.19 -2.91 -0.02 5.20 16 17 C -0.02 -1.08 5.49 84.83 0.47 -0.62 16 18 N -0.92 -52.90 13.67 21.61 0.30 -52.61 16 19 Si 1.02 39.44 29.55 68.60 2.03 41.46 16 20 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 21 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 23 C -0.25 -8.90 9.15 22.35 0.20 -8.70 16 24 C -0.02 -0.38 9.78 22.53 0.22 -0.16 16 25 C -0.17 -2.22 5.23 -10.77 -0.06 -2.27 16 26 C -0.18 -2.50 10.12 30.59 0.31 -2.19 16 27 C -0.15 -1.79 10.18 30.62 0.31 -1.48 16 28 H 0.05 1.12 7.48 -2.38 -0.02 1.10 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.42 7.36 7.64 -92.70 -0.71 6.65 16 32 H 0.42 6.89 8.63 -213.32 -1.84 5.05 16 33 H 0.16 1.54 8.02 -2.91 -0.02 1.52 16 34 H 0.14 3.38 7.55 -2.91 -0.02 3.35 16 35 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.13 4.67 5.62 -2.91 -0.02 4.66 16 38 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.12 1.35 8.11 -2.39 -0.02 1.33 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 1.19 8.05 -2.39 -0.02 1.17 16 Total: -1.00 -69.73 383.20 2.27 -67.46 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -1.49 Total: 31.43 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 5.72 Total: -21.51 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.19 Total: -83.69 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.21 Total: -12.30 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.46 kcal Atomic # 16 Polarization: -21.26 SS G_CDS: -1.59 Total: -22.85 kcal Total: -69.73 2.27 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751532515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.078 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds