Wall clock time and date at job start Tue Mar 31 2020 18:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.47193 * 109.47246 * 239.99421 * 2 1 3 5 5 N 2.60793 * 109.47291 * 239.99695 * 2 1 3 6 6 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 7 7 S 1.81400 * 109.47145 * 295.00563 * 6 2 1 8 8 C 1.76194 * 102.99896 * 179.97438 * 7 6 2 9 9 C 1.38729 * 120.10349 * 359.97438 * 8 7 6 10 10 C 1.38251 * 119.99518 * 179.97438 * 9 8 7 11 11 C 1.38271 * 120.19546 * 0.02562 * 10 9 8 12 12 C 1.38287 * 120.20327 * 359.97438 * 11 10 9 13 13 C 1.38640 * 120.00721 * 359.70752 * 12 11 10 14 14 N 1.40004 * 120.10202 * 180.27759 * 13 12 11 15 15 C 1.46498 * 119.99782 * 0.29231 * 14 13 12 16 16 C 1.50705 * 109.47228 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99818 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99756 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99656 * 180.02562 * 18 16 15 20 20 C 1.50695 * 109.47495 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99841 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00486 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99639 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47090 * 89.99910 * 24 22 20 26 26 H 1.48504 * 109.46697 * 210.00083 * 24 22 20 27 27 H 1.48501 * 109.47183 * 329.99728 * 24 22 20 28 28 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 30 30 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 31 31 H 1.09001 * 109.47002 * 55.00002 * 6 2 1 32 32 H 1.08993 * 109.46955 * 175.00440 * 6 2 1 33 33 H 1.08001 * 119.99932 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.90214 * 179.97438 * 10 9 8 35 35 H 1.07998 * 119.89362 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.99605 * 180.02562 * 12 11 10 37 37 H 0.96998 * 120.00188 * 180.30083 * 14 13 12 38 38 H 1.09002 * 109.47412 * 300.00510 * 15 14 13 39 39 H 1.08997 * 109.47195 * 60.00357 * 15 14 13 40 40 H 0.96996 * 120.00449 * 0.02562 * 18 16 15 41 41 H 1.09009 * 109.47193 * 300.00092 * 19 18 16 42 42 H 1.09007 * 109.47615 * 60.00033 * 19 18 16 43 43 H 0.97002 * 119.99522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2017 5 7 2.3993 -1.2295 -2.1293 6 6 2.0400 -0.7212 1.2493 7 16 1.5600 0.2157 2.7266 8 6 2.2221 -0.7517 4.0420 9 6 2.9131 -1.9224 3.7652 10 6 3.4322 -2.6795 4.7989 11 6 3.2644 -2.2740 6.1102 12 6 2.5770 -1.1085 6.3954 13 6 2.0586 -0.3394 5.3649 14 7 1.3673 0.8439 5.6512 15 6 1.1963 1.2744 7.0410 16 6 0.4228 2.5674 7.0749 17 8 0.0506 3.0786 6.0399 18 7 0.1438 3.1549 8.2553 19 6 -0.6087 4.4115 8.2882 20 6 -0.7846 4.8544 9.7178 21 1 -0.3763 4.2596 10.5216 22 6 -1.4667 6.0190 9.9999 23 7 -1.9634 6.7435 9.0212 24 14 -1.6840 6.5683 11.7720 25 1 -0.5435 7.4341 12.1653 26 1 -2.9519 7.3304 11.9020 27 1 -1.7295 5.3770 12.6575 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7197 1.2953 32 1 3.1262 -0.7993 1.2057 33 1 3.0456 -2.2422 2.7421 34 1 3.9696 -3.5908 4.5817 35 1 3.6716 -2.8694 6.9140 36 1 2.4482 -0.7947 7.4208 37 1 1.0015 1.3787 4.9293 38 1 0.6500 0.5100 7.5936 39 1 2.1745 1.4238 7.4981 40 1 0.4411 2.7458 9.0829 41 1 -0.0629 5.1764 7.7357 42 1 -1.5868 4.2615 7.8310 43 1 -2.4430 7.5630 9.2196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759776084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:09 Heat of formation + Delta-G solvation = 6.521881 kcal Electronic energy + Delta-G solvation = -24212.351171 eV Core-core repulsion = 20576.244596 eV Total energy + Delta-G solvation = -3636.106575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.71457 -38.79291 -37.85560 -35.42031 -34.76759 -34.27690 -32.45256 -31.35897 -30.12255 -28.04379 -27.75457 -26.00150 -24.04553 -23.19948 -22.57421 -21.49117 -19.89964 -18.50318 -18.04631 -17.29485 -16.67784 -16.31830 -15.80917 -15.49971 -15.40070 -15.27384 -14.87403 -14.62731 -14.32912 -14.14990 -13.91521 -13.85003 -13.54587 -13.46910 -13.18214 -12.88410 -12.72043 -12.65854 -12.25537 -12.03440 -11.95943 -11.81471 -11.75587 -11.60860 -11.21287 -11.04669 -10.94261 -10.38896 -10.35206 -10.30028 -9.78396 -9.48321 -9.31096 -8.82250 -8.10515 -8.02843 -7.13149 -6.23055 -4.30583 1.11627 1.12115 1.45462 2.16806 2.33104 2.34121 3.12338 3.20244 3.20592 3.27390 3.29568 3.50834 3.65413 4.01759 4.11539 4.24758 4.30681 4.61088 4.66400 4.88623 4.93900 5.03765 5.11828 5.13339 5.20643 5.25008 5.33611 5.34705 5.38326 5.43811 5.50576 5.68453 5.75874 5.99121 6.15971 6.43345 6.63581 7.08801 7.09134 7.21236 7.26647 7.41562 7.56575 7.69981 7.88755 8.45527 8.65666 8.90725 9.35980 10.87024 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002176 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.332577 B =12862.825460 C =14636.123336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.023 3.977 3 H 0.126 0.874 4 C 0.215 3.785 5 N -0.429 5.429 6 C -0.110 4.110 7 S -0.091 6.091 8 C -0.168 4.168 9 C -0.083 4.083 10 C -0.168 4.168 11 C -0.070 4.070 12 C -0.188 4.188 13 C 0.248 3.752 14 N -0.724 5.724 15 C 0.101 3.899 16 C 0.492 3.508 17 O -0.550 6.550 18 N -0.705 5.705 19 C 0.250 3.750 20 C -0.546 4.546 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.884 5.884 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.414 0.586 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.393 0.607 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.361 -18.260 -10.331 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 H 0.144 0.856 4 C -0.105 4.105 5 N -0.104 5.104 6 C -0.259 4.259 7 S 0.151 5.849 8 C -0.284 4.284 9 C -0.108 4.108 10 C -0.190 4.190 11 C -0.091 4.091 12 C -0.212 4.212 13 C 0.138 3.862 14 N -0.356 5.356 15 C -0.027 4.027 16 C 0.276 3.724 17 O -0.429 6.429 18 N -0.353 5.353 19 C 0.129 3.871 20 C -0.584 4.584 21 H 0.082 0.918 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.254 0.746 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.226 0.774 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.851 -17.338 -12.343 23.050 hybrid contribution 0.506 -0.627 1.517 1.718 sum 9.357 -17.965 -10.826 22.967 Atomic orbital electron populations 1.21953 0.90764 1.03897 1.04421 1.18536 0.98008 0.99175 0.84249 0.85615 1.28972 0.93377 0.93765 0.94400 1.81253 1.08755 1.09147 1.11255 1.23644 1.05082 1.02685 0.94520 1.85466 1.70899 1.32808 0.95725 1.21038 1.10912 1.01747 0.94746 1.20843 0.97313 0.93317 0.99284 1.20757 1.04582 1.01111 0.92560 1.20932 0.96438 0.95247 0.96505 1.20642 1.05266 0.97406 0.97929 1.17309 0.91238 0.86481 0.91194 1.44610 1.60073 1.23487 1.07452 1.21164 1.00944 0.95935 0.84659 1.20298 0.81092 0.85950 0.85046 1.90669 1.54114 1.65269 1.32854 1.46409 1.55531 1.26704 1.06705 1.19162 0.91269 0.79098 0.97551 1.21205 1.37246 1.08451 0.91526 0.91797 1.24957 0.94976 0.96102 0.97973 1.69968 1.35665 1.14895 1.31602 0.86395 0.77748 0.78801 0.83856 1.20428 1.20972 1.19720 0.91375 0.89134 0.91122 0.88470 0.88585 0.86288 0.86314 0.85970 0.85430 0.74571 0.89409 0.89413 0.77403 0.95338 0.95319 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.97 37.15 0.33 -0.48 16 2 C 0.02 0.13 2.76 -93.41 -0.26 -0.13 16 3 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.21 1.71 14.64 -20.76 -0.30 1.41 16 5 N -0.43 -4.70 18.54 42.15 0.78 -3.92 16 6 C -0.11 -0.69 3.73 37.16 0.14 -0.55 16 7 S -0.09 -0.88 19.26 -107.50 -2.07 -2.95 16 8 C -0.17 -1.85 6.12 -38.92 -0.24 -2.09 16 9 C -0.08 -0.78 9.36 -39.39 -0.37 -1.15 16 10 C -0.17 -1.49 10.04 -39.56 -0.40 -1.88 16 11 C -0.07 -0.63 10.04 -39.55 -0.40 -1.03 16 12 C -0.19 -1.95 9.31 -39.41 -0.37 -2.32 16 13 C 0.25 3.00 6.66 -83.49 -0.56 2.44 16 14 N -0.72 -9.82 5.66 -59.62 -0.34 -10.16 16 15 C 0.10 1.31 5.40 -5.19 -0.03 1.28 16 16 C 0.49 8.96 7.90 -10.99 -0.09 8.88 16 17 O -0.55 -12.22 15.67 5.56 0.09 -12.13 16 18 N -0.71 -13.65 5.55 -61.47 -0.34 -13.99 16 19 C 0.25 6.30 5.43 -5.20 -0.03 6.28 16 20 C -0.55 -14.24 9.28 -34.44 -0.32 -14.55 16 21 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.88 -25.36 13.29 55.43 0.74 -24.62 16 24 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.55 7.13 -51.93 -0.37 0.18 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.55 7.75 -51.92 -0.40 0.15 16 32 H 0.10 0.56 7.75 -51.93 -0.40 0.15 16 33 H 0.12 0.87 5.88 -52.49 -0.31 0.57 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.13 6.74 -52.48 -0.35 0.78 16 37 H 0.41 6.30 5.98 -40.82 -0.24 6.06 16 38 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 39 H 0.09 0.95 7.96 -51.93 -0.41 0.54 16 40 H 0.39 6.32 8.32 -40.82 -0.34 5.98 16 41 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -32.73 382.11 -9.12 -41.85 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.74 Total: 7.21 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.97 Total: -2.28 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.84 Total: -52.69 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.07 Total: -2.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.73 -9.12 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759776084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.375 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds