Wall clock time and date at job start Tue Mar 31 2020 18:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.47193 * 109.47246 * 239.99421 * 2 1 3 5 5 N 2.60793 * 109.47291 * 239.99695 * 2 1 3 6 6 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 7 7 S 1.81400 * 109.47145 * 295.00563 * 6 2 1 8 8 C 1.76194 * 102.99896 * 179.97438 * 7 6 2 9 9 C 1.38729 * 120.10349 * 359.97438 * 8 7 6 10 10 C 1.38251 * 119.99518 * 179.97438 * 9 8 7 11 11 C 1.38271 * 120.19546 * 0.02562 * 10 9 8 12 12 C 1.38287 * 120.20327 * 359.97438 * 11 10 9 13 13 C 1.38640 * 120.00721 * 359.70752 * 12 11 10 14 14 N 1.40004 * 120.10202 * 180.27759 * 13 12 11 15 15 C 1.46498 * 119.99782 * 0.29231 * 14 13 12 16 16 C 1.50705 * 109.47228 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99818 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99756 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99656 * 180.02562 * 18 16 15 20 20 C 1.50695 * 109.47495 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99841 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00486 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99639 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47090 * 89.99910 * 24 22 20 26 26 H 1.48504 * 109.46697 * 210.00083 * 24 22 20 27 27 H 1.48501 * 109.47183 * 329.99728 * 24 22 20 28 28 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 30 30 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 31 31 H 1.09001 * 109.47002 * 55.00002 * 6 2 1 32 32 H 1.08993 * 109.46955 * 175.00440 * 6 2 1 33 33 H 1.08001 * 119.99932 * 359.97438 * 9 8 7 34 34 H 1.07997 * 119.90214 * 179.97438 * 10 9 8 35 35 H 1.07998 * 119.89362 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.99605 * 180.02562 * 12 11 10 37 37 H 0.96998 * 120.00188 * 180.30083 * 14 13 12 38 38 H 1.09002 * 109.47412 * 300.00510 * 15 14 13 39 39 H 1.08997 * 109.47195 * 60.00357 * 15 14 13 40 40 H 0.96996 * 120.00449 * 0.02562 * 18 16 15 41 41 H 1.09009 * 109.47193 * 300.00092 * 19 18 16 42 42 H 1.09007 * 109.47615 * 60.00033 * 19 18 16 43 43 H 0.97002 * 119.99522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6940 -1.2017 5 7 2.3993 -1.2295 -2.1293 6 6 2.0400 -0.7212 1.2493 7 16 1.5600 0.2157 2.7266 8 6 2.2221 -0.7517 4.0420 9 6 2.9131 -1.9224 3.7652 10 6 3.4322 -2.6795 4.7989 11 6 3.2644 -2.2740 6.1102 12 6 2.5770 -1.1085 6.3954 13 6 2.0586 -0.3394 5.3649 14 7 1.3673 0.8439 5.6512 15 6 1.1963 1.2744 7.0410 16 6 0.4228 2.5674 7.0749 17 8 0.0506 3.0786 6.0399 18 7 0.1438 3.1549 8.2553 19 6 -0.6087 4.4115 8.2882 20 6 -0.7846 4.8544 9.7178 21 1 -0.3763 4.2596 10.5216 22 6 -1.4667 6.0190 9.9999 23 7 -1.9634 6.7435 9.0212 24 14 -1.6840 6.5683 11.7720 25 1 -0.5435 7.4341 12.1653 26 1 -2.9519 7.3304 11.9020 27 1 -1.7295 5.3770 12.6575 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7197 1.2953 32 1 3.1262 -0.7993 1.2057 33 1 3.0456 -2.2422 2.7421 34 1 3.9696 -3.5908 4.5817 35 1 3.6716 -2.8694 6.9140 36 1 2.4482 -0.7947 7.4208 37 1 1.0015 1.3787 4.9293 38 1 0.6500 0.5100 7.5936 39 1 2.1745 1.4238 7.4981 40 1 0.4411 2.7458 9.0829 41 1 -0.0629 5.1764 7.7357 42 1 -1.5868 4.2615 7.8310 43 1 -2.4430 7.5630 9.2196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759776084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:08 Heat of formation + Delta-G solvation = -14.380164 kcal Electronic energy + Delta-G solvation = -24213.257551 eV Core-core repulsion = 20576.244596 eV Total energy + Delta-G solvation = -3637.012955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.86985 -39.92901 -38.50620 -36.50280 -35.96639 -35.38661 -34.38014 -32.07268 -31.14977 -29.43904 -28.49812 -27.26098 -24.76791 -24.45607 -23.74813 -22.39628 -21.40436 -19.50790 -18.82085 -18.44243 -17.78063 -17.51929 -16.87933 -16.79285 -16.71391 -16.34125 -15.96261 -15.56781 -15.24270 -15.04072 -14.90543 -14.70438 -14.59891 -14.36750 -14.16635 -13.97048 -13.87266 -13.76644 -13.47294 -13.31337 -12.93317 -12.82771 -12.70520 -12.60101 -12.33297 -12.22158 -12.12258 -11.87306 -11.48106 -11.11028 -11.03014 -10.89712 -10.79996 -10.50923 -9.87523 -8.86609 -8.28265 -7.92923 -6.44518 0.40265 0.45656 0.70894 1.45205 1.47025 1.48998 1.58168 1.65039 1.67762 1.69122 2.09456 2.40123 2.76405 2.91248 2.93070 3.07133 3.59766 3.75689 3.83191 3.94939 4.16403 4.24945 4.33025 4.40855 4.45708 4.51749 4.53297 4.58601 4.74360 4.88166 4.98214 5.00032 5.11340 5.24735 5.26613 5.31461 5.45938 5.48262 5.65324 5.73530 5.84731 5.93491 6.29671 6.44992 6.64141 6.67671 6.85557 7.23528 7.41606 8.83709 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002176 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.332577 B =12862.825460 C =14636.123336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.030 3.970 3 H 0.140 0.860 4 C 0.244 3.756 5 N -0.479 5.479 6 C -0.096 4.096 7 S -0.126 6.126 8 C -0.179 4.179 9 C -0.090 4.090 10 C -0.168 4.168 11 C -0.073 4.073 12 C -0.194 4.194 13 C 0.221 3.779 14 N -0.740 5.740 15 C 0.118 3.882 16 C 0.490 3.510 17 O -0.595 6.595 18 N -0.700 5.700 19 C 0.266 3.734 20 C -0.556 4.556 21 H 0.086 0.914 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.984 3.016 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.254 1.254 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.403 0.597 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.412 0.588 41 H -0.011 1.011 42 H -0.010 1.010 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.727 -20.404 -8.511 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 H 0.158 0.842 4 C -0.075 4.075 5 N -0.156 5.156 6 C -0.246 4.246 7 S 0.115 5.885 8 C -0.296 4.296 9 C -0.114 4.114 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.218 4.218 13 C 0.113 3.887 14 N -0.372 5.372 15 C -0.009 4.009 16 C 0.277 3.723 17 O -0.476 6.476 18 N -0.350 5.350 19 C 0.143 3.857 20 C -0.594 4.594 21 H 0.104 0.896 22 C -0.197 4.197 23 N -0.569 5.569 24 Si 0.807 3.193 25 H -0.197 1.197 26 H -0.212 1.212 27 H -0.178 1.178 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.241 0.759 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.249 0.751 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.262 -19.556 -10.496 24.452 hybrid contribution 0.114 -0.032 0.863 0.871 sum 10.376 -19.588 -9.633 24.169 Atomic orbital electron populations 1.21946 0.90419 1.04174 1.04407 1.18611 0.98143 0.99536 0.82971 0.84199 1.29199 0.91911 0.92460 0.93940 1.81286 1.10530 1.10891 1.12868 1.23629 1.05672 1.02510 0.92764 1.85617 1.71294 1.34082 0.97471 1.21239 1.11247 1.02375 0.94707 1.21134 0.96891 0.92796 1.00577 1.21144 1.03747 1.01577 0.92439 1.21283 0.95771 0.94909 0.97446 1.20915 1.05037 0.97642 0.98231 1.17575 0.92364 0.86473 0.92259 1.44629 1.61286 1.24330 1.06964 1.21128 1.01488 0.92938 0.85389 1.21247 0.80225 0.87171 0.83641 1.90649 1.55716 1.66865 1.34415 1.46084 1.55339 1.25190 1.08377 1.18567 0.89483 0.80721 0.96880 1.21630 1.36896 1.08759 0.92066 0.89558 1.26055 0.94483 0.96231 1.02889 1.70133 1.36786 1.15549 1.34409 0.85170 0.77499 0.78732 0.77904 1.19710 1.21175 1.17806 0.91011 0.89849 0.90408 0.87501 0.87651 0.84527 0.83985 0.83396 0.84045 0.75912 0.86630 0.86656 0.75137 0.99288 0.99241 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.97 71.98 0.65 -0.86 16 2 C 0.03 0.30 2.76 -12.60 -0.03 0.27 16 3 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 4 C 0.24 3.65 14.64 89.44 1.31 4.96 16 5 N -0.48 -10.29 18.54 20.00 0.37 -9.92 16 6 C -0.10 -1.08 3.73 71.98 0.27 -0.81 16 7 S -0.13 -2.42 19.26 -56.49 -1.09 -3.51 16 8 C -0.18 -3.78 6.12 22.70 0.14 -3.64 16 9 C -0.09 -1.50 9.36 22.39 0.21 -1.29 16 10 C -0.17 -2.46 10.04 22.28 0.22 -2.23 16 11 C -0.07 -1.09 10.04 22.29 0.22 -0.87 16 12 C -0.19 -3.55 9.31 22.38 0.21 -3.34 16 13 C 0.22 5.10 6.66 38.24 0.25 5.35 16 14 N -0.74 -19.76 5.66 -342.54 -1.94 -21.69 16 15 C 0.12 2.87 5.40 85.64 0.46 3.34 16 16 C 0.49 18.05 7.90 87.66 0.69 18.74 16 17 O -0.59 -27.66 15.67 -3.04 -0.05 -27.71 16 18 N -0.70 -27.24 5.55 -466.77 -2.59 -29.83 16 19 C 0.27 14.00 5.43 85.63 0.46 14.47 16 20 C -0.56 -29.07 9.28 25.60 0.24 -28.84 16 21 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 22 C 0.00 0.17 5.46 84.66 0.46 0.63 16 23 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 24 Si 0.98 41.15 29.54 68.60 2.03 43.18 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 1.00 7.13 -2.39 -0.02 0.99 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 1.02 7.75 -2.39 -0.02 1.00 16 32 H 0.10 1.02 7.75 -2.39 -0.02 1.00 16 33 H 0.14 1.67 5.88 -2.91 -0.02 1.65 16 34 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.06 6.74 -2.91 -0.02 2.04 16 37 H 0.40 12.61 5.98 -92.71 -0.55 12.06 16 38 H 0.12 2.20 7.94 -2.39 -0.02 2.18 16 39 H 0.12 2.20 7.96 -2.39 -0.02 2.18 16 40 H 0.41 12.69 8.32 -92.71 -0.77 11.92 16 41 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 42 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 43 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -74.64 382.11 2.52 -72.12 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.27 Total: 26.16 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.77 Total: 5.87 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -3.87 Total: -116.11 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -1.09 Total: -3.51 kcal Total: -74.64 2.52 -72.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759776084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.741 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds