Wall clock time and date at job start Tue Mar 31 2020 17:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00170 * 2 1 4 4 C 1.53006 * 109.47115 * 173.25060 * 3 2 1 5 5 C 1.50695 * 109.47129 * 53.25391 * 3 2 1 6 6 O 1.21310 * 120.00220 * 215.00391 * 5 3 2 7 7 N 1.34772 * 120.00368 * 34.99484 * 5 3 2 8 8 C 1.40597 * 120.00413 * 180.02562 * 7 5 3 9 9 C 1.40647 * 126.08159 * 359.96984 * 8 7 5 10 10 N 1.30910 * 108.38838 * 179.77887 * 9 8 7 11 11 N 1.40071 * 108.40507 * 0.38729 * 10 9 8 12 12 C 1.37318 * 126.06839 * 179.87687 * 11 10 9 13 13 H 1.08003 * 120.00163 * 179.68942 * 12 11 10 14 14 C 1.38984 * 120.00106 * 359.40994 * 12 11 10 15 15 N 1.31296 * 120.00160 * 0.27729 * 14 12 11 16 16 Si 1.86799 * 120.00188 * 180.27579 * 14 12 11 17 17 H 1.48503 * 109.47392 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47197 * 120.00221 * 16 14 12 19 19 H 1.48500 * 109.47377 * 240.00019 * 16 14 12 20 20 C 1.35682 * 126.08404 * 180.02562 * 8 7 5 21 21 C 1.50695 * 109.47448 * 293.24925 * 3 2 1 22 22 C 1.38226 * 120.01439 * 357.48785 * 21 3 2 23 23 C 1.38218 * 120.02775 * 179.97438 * 22 21 3 24 24 C 1.38270 * 120.05031 * 0.02562 * 23 22 21 25 25 C 1.38170 * 120.02641 * 0.02562 * 24 23 22 26 26 C 1.38436 * 120.01372 * 177.20868 * 21 3 2 27 27 F 1.35100 * 120.02722 * 359.97438 * 26 21 3 28 28 H 1.09001 * 109.47202 * 52.12020 * 1 2 3 29 29 H 1.08999 * 109.47588 * 172.12579 * 1 2 3 30 30 H 1.09002 * 109.46803 * 292.12748 * 1 2 3 31 31 H 1.09001 * 109.46561 * 300.00230 * 4 3 2 32 32 H 1.08997 * 109.46972 * 59.99810 * 4 3 2 33 33 H 1.09002 * 109.47167 * 180.02562 * 4 3 2 34 34 H 0.97007 * 120.00079 * 359.97438 * 7 5 3 35 35 H 1.08001 * 125.80450 * 0.02937 * 9 8 7 36 36 H 0.96998 * 120.00681 * 179.97438 * 15 14 12 37 37 H 1.08000 * 126.24348 * 0.02562 * 20 8 7 38 38 H 1.08001 * 119.98130 * 359.97438 * 22 21 3 39 39 H 1.08001 * 119.97232 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.98368 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.00909 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5264 1.1886 0.1695 5 6 1.4380 2.1100 1.1385 6 8 1.2534 3.3017 1.0063 7 7 1.1313 1.5058 2.3034 8 6 0.5969 2.2564 3.3654 9 6 0.3320 3.6376 3.3525 10 7 -0.1639 3.9739 4.5164 11 7 -0.2267 2.8273 5.3184 12 6 -0.6872 2.7687 6.6107 13 1 -0.6964 1.8266 7.1386 14 6 -1.1362 3.9230 7.2414 15 7 -1.1251 5.0684 6.5997 16 14 -1.7556 3.8448 9.0020 17 1 -1.6649 2.4476 9.4971 18 1 -0.9243 4.7279 9.8588 19 1 -3.1693 4.2967 9.0500 20 6 0.2461 1.7774 4.5854 21 6 1.7023 1.9925 -1.3054 22 6 1.0027 1.3223 -2.2913 23 6 0.7196 1.9524 -3.4885 24 6 1.1362 3.2535 -3.7016 25 6 1.8366 3.9251 -2.7180 26 6 2.1148 3.2971 -1.5154 27 9 2.7933 3.9553 -0.5502 28 1 -0.3634 0.6310 -0.8111 29 1 -0.3634 -1.0179 -0.1408 30 1 -0.3633 0.3871 0.9520 31 1 3.7491 0.6916 1.1138 32 1 3.9402 0.6066 -0.6539 33 1 3.9697 2.1844 0.1700 34 1 1.2784 0.5528 2.4090 35 1 0.5042 4.3063 2.5220 36 1 -1.4387 5.8740 7.0397 37 1 0.3268 0.7525 4.9163 38 1 0.6772 0.3058 -2.1260 39 1 0.1733 1.4277 -4.2584 40 1 0.9148 3.7447 -4.6376 41 1 2.1622 4.9412 -2.8849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760212934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:09 Heat of formation + Delta-G solvation = 7.578081 kcal Electronic energy + Delta-G solvation = -29061.246256 eV Core-core repulsion = 24858.972306 eV Total energy + Delta-G solvation = -4202.273950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -48.62178 -40.78436 -39.51628 -38.37587 -37.25893 -34.28322 -33.11565 -32.80393 -30.85662 -30.23848 -29.71598 -27.80767 -26.46703 -25.21707 -24.25909 -22.82349 -22.34703 -20.91666 -19.94556 -19.39431 -17.89577 -17.76195 -17.09116 -16.58216 -16.06288 -15.47245 -15.43342 -15.36194 -15.09675 -14.90049 -14.72878 -14.49632 -13.96245 -13.74328 -13.40064 -13.11004 -12.92278 -12.90975 -12.54804 -12.41415 -12.21150 -12.11905 -11.81926 -11.67445 -11.53061 -11.41451 -11.27265 -11.07738 -10.90618 -10.50998 -10.27738 -10.06737 -9.18245 -9.14191 -8.91798 -8.78900 -8.61490 -8.05454 -6.69580 -6.55558 -4.22588 1.03970 1.15786 2.72613 2.99806 3.04947 3.11128 3.27085 3.52079 3.66909 3.68616 3.87365 4.29197 4.38638 4.45101 4.65276 4.72323 4.80391 4.96890 5.02616 5.11128 5.16338 5.25435 5.34414 5.38366 5.53536 5.58225 5.72013 5.72580 5.94612 6.01837 6.08751 6.17824 6.24656 6.27354 6.44409 6.77094 6.82302 6.92705 6.96905 7.13786 7.24168 7.86260 8.16342 8.28032 8.61623 8.82416 9.38212 9.67474 10.40454 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.002990 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.074504 B = 9361.633100 C = 9833.025754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.365 6.365 3 C 0.152 3.848 4 C -0.137 4.137 5 C 0.478 3.522 6 O -0.514 6.514 7 N -0.614 5.614 8 C -0.061 4.061 9 C -0.032 4.032 10 N -0.260 5.260 11 N -0.142 5.142 12 C -0.323 4.323 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.769 5.769 16 Si 0.935 3.065 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.081 4.081 23 C -0.143 4.143 24 C -0.086 4.086 25 C -0.165 4.165 26 C 0.150 3.850 27 F -0.117 7.117 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.400 0.600 35 H 0.175 0.825 36 H 0.274 0.726 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -9.375 -16.874 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.283 6.283 3 C 0.108 3.892 4 C -0.195 4.195 5 C 0.262 3.738 6 O -0.390 6.390 7 N -0.257 5.257 8 C -0.166 4.166 9 C -0.207 4.207 10 N -0.091 5.091 11 N 0.090 4.910 12 C -0.455 4.455 13 H 0.134 0.866 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.759 3.241 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.234 4.234 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.161 4.161 24 C -0.104 4.104 25 C -0.184 4.184 26 C 0.130 3.870 27 F -0.095 7.095 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.234 0.766 35 H 0.192 0.808 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.252 -7.453 -16.161 18.297 hybrid contribution -0.025 -0.924 0.513 1.057 sum 4.227 -8.377 -15.648 18.246 Atomic orbital electron populations 1.23310 0.80517 1.03329 1.02582 1.87962 1.20423 1.25223 1.94706 1.20448 0.96052 0.82725 0.89929 1.21821 0.89724 1.04121 1.03789 1.20613 0.80708 0.88614 0.83867 1.90655 1.52226 1.14647 1.81448 1.42534 1.60808 1.11047 1.11359 1.17286 1.17597 0.92418 0.89341 1.24099 1.05365 0.93269 0.97979 1.78261 1.24026 1.05945 1.00877 1.44557 1.33880 1.03606 1.08946 1.19917 1.42806 0.97260 0.85524 0.86584 1.25644 0.96216 0.94626 1.00636 1.70227 1.34408 0.98846 1.36129 0.85765 0.78724 0.79236 0.80419 1.18690 1.19919 1.19920 1.21254 1.14932 0.94209 0.92971 1.19998 1.03278 0.94224 0.97006 1.21047 0.96124 1.00462 0.92299 1.21109 1.02061 0.95445 0.97505 1.21015 0.96295 0.94555 0.98581 1.21159 1.02850 1.01357 0.93051 1.17363 0.93918 0.89737 0.85994 1.91573 1.76269 1.80175 1.61463 0.92425 0.88808 0.92305 0.90587 0.90544 0.89754 0.76561 0.80820 0.91526 0.83718 0.84212 0.85408 0.85213 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.12 101.05 0.92 0.91 16 2 O -0.36 -4.56 9.08 -35.23 -0.32 -4.88 16 3 C 0.15 2.16 0.80 -92.93 -0.07 2.09 16 4 C -0.14 -1.71 8.64 37.16 0.32 -1.39 16 5 C 0.48 8.75 5.46 -10.99 -0.06 8.69 16 6 O -0.51 -11.21 10.40 5.53 0.06 -11.16 16 7 N -0.61 -11.37 4.18 -10.00 -0.04 -11.42 16 8 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 9 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 10 N -0.26 -7.66 10.40 30.80 0.32 -7.34 16 11 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 12 C -0.32 -8.60 10.25 -14.82 -0.15 -8.75 16 13 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 14 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.69 11.81 55.49 0.66 -21.03 16 16 Si 0.93 19.05 29.55 -169.99 -5.02 14.02 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 C -0.08 -1.97 11.49 -16.39 -0.19 -2.16 16 21 C -0.14 -1.99 4.42 -104.56 -0.46 -2.45 16 22 C -0.08 -0.92 7.70 -39.59 -0.30 -1.23 16 23 C -0.14 -1.38 10.04 -39.58 -0.40 -1.77 16 24 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 25 C -0.17 -1.99 10.03 -39.51 -0.40 -2.38 16 26 C 0.15 2.21 6.19 -39.42 -0.24 1.97 16 27 F -0.12 -2.01 12.89 2.25 0.03 -1.98 16 28 H 0.06 0.66 5.13 -51.93 -0.27 0.39 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.80 6.23 -51.93 -0.32 0.48 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 34 H 0.40 6.16 7.96 -40.82 -0.32 5.83 16 35 H 0.18 4.67 5.92 -52.49 -0.31 4.36 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 38 H 0.14 1.36 5.53 -52.49 -0.29 1.07 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -33.82 340.90 -5.88 -39.71 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -4.36 Total: 12.57 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.29 Total: -9.66 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.89 Total: -43.77 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.26 Total: -16.03 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.98 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.82 -5.88 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760212934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.283 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds