Wall clock time and date at job start Tue Mar 31 2020 17:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00170 * 2 1 4 4 C 1.53006 * 109.47115 * 173.25060 * 3 2 1 5 5 C 1.50695 * 109.47129 * 53.25391 * 3 2 1 6 6 O 1.21310 * 120.00220 * 215.00391 * 5 3 2 7 7 N 1.34772 * 120.00368 * 34.99484 * 5 3 2 8 8 C 1.40597 * 120.00413 * 180.02562 * 7 5 3 9 9 C 1.40647 * 126.08159 * 359.96984 * 8 7 5 10 10 N 1.30910 * 108.38838 * 179.77887 * 9 8 7 11 11 N 1.40071 * 108.40507 * 0.38729 * 10 9 8 12 12 C 1.37318 * 126.06839 * 179.87687 * 11 10 9 13 13 H 1.08003 * 120.00163 * 179.68942 * 12 11 10 14 14 C 1.38984 * 120.00106 * 359.40994 * 12 11 10 15 15 N 1.31296 * 120.00160 * 0.27729 * 14 12 11 16 16 Si 1.86799 * 120.00188 * 180.27579 * 14 12 11 17 17 H 1.48503 * 109.47392 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47197 * 120.00221 * 16 14 12 19 19 H 1.48500 * 109.47377 * 240.00019 * 16 14 12 20 20 C 1.35682 * 126.08404 * 180.02562 * 8 7 5 21 21 C 1.50695 * 109.47448 * 293.24925 * 3 2 1 22 22 C 1.38226 * 120.01439 * 357.48785 * 21 3 2 23 23 C 1.38218 * 120.02775 * 179.97438 * 22 21 3 24 24 C 1.38270 * 120.05031 * 0.02562 * 23 22 21 25 25 C 1.38170 * 120.02641 * 0.02562 * 24 23 22 26 26 C 1.38436 * 120.01372 * 177.20868 * 21 3 2 27 27 F 1.35100 * 120.02722 * 359.97438 * 26 21 3 28 28 H 1.09001 * 109.47202 * 52.12020 * 1 2 3 29 29 H 1.08999 * 109.47588 * 172.12579 * 1 2 3 30 30 H 1.09002 * 109.46803 * 292.12748 * 1 2 3 31 31 H 1.09001 * 109.46561 * 300.00230 * 4 3 2 32 32 H 1.08997 * 109.46972 * 59.99810 * 4 3 2 33 33 H 1.09002 * 109.47167 * 180.02562 * 4 3 2 34 34 H 0.97007 * 120.00079 * 359.97438 * 7 5 3 35 35 H 1.08001 * 125.80450 * 0.02937 * 9 8 7 36 36 H 0.96998 * 120.00681 * 179.97438 * 15 14 12 37 37 H 1.08000 * 126.24348 * 0.02562 * 20 8 7 38 38 H 1.08001 * 119.98130 * 359.97438 * 22 21 3 39 39 H 1.08001 * 119.97232 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.98368 * 179.97438 * 24 23 22 41 41 H 1.07995 * 120.00909 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5264 1.1886 0.1695 5 6 1.4380 2.1100 1.1385 6 8 1.2534 3.3017 1.0063 7 7 1.1313 1.5058 2.3034 8 6 0.5969 2.2564 3.3654 9 6 0.3320 3.6376 3.3525 10 7 -0.1639 3.9739 4.5164 11 7 -0.2267 2.8273 5.3184 12 6 -0.6872 2.7687 6.6107 13 1 -0.6964 1.8266 7.1386 14 6 -1.1362 3.9230 7.2414 15 7 -1.1251 5.0684 6.5997 16 14 -1.7556 3.8448 9.0020 17 1 -1.6649 2.4476 9.4971 18 1 -0.9243 4.7279 9.8588 19 1 -3.1693 4.2967 9.0500 20 6 0.2461 1.7774 4.5854 21 6 1.7023 1.9925 -1.3054 22 6 1.0027 1.3223 -2.2913 23 6 0.7196 1.9524 -3.4885 24 6 1.1362 3.2535 -3.7016 25 6 1.8366 3.9251 -2.7180 26 6 2.1148 3.2971 -1.5154 27 9 2.7933 3.9553 -0.5502 28 1 -0.3634 0.6310 -0.8111 29 1 -0.3634 -1.0179 -0.1408 30 1 -0.3633 0.3871 0.9520 31 1 3.7491 0.6916 1.1138 32 1 3.9402 0.6066 -0.6539 33 1 3.9697 2.1844 0.1700 34 1 1.2784 0.5528 2.4090 35 1 0.5042 4.3063 2.5220 36 1 -1.4387 5.8740 7.0397 37 1 0.3268 0.7525 4.9163 38 1 0.6772 0.3058 -2.1260 39 1 0.1733 1.4277 -4.2584 40 1 0.9148 3.7447 -4.6376 41 1 2.1622 4.9412 -2.8849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760212934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:08 Heat of formation + Delta-G solvation = -14.892518 kcal Electronic energy + Delta-G solvation = -29062.220654 eV Core-core repulsion = 24858.972306 eV Total energy + Delta-G solvation = -4203.248349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.76588 -42.13779 -41.23715 -39.59139 -38.42271 -36.00977 -34.95657 -33.85195 -32.26838 -31.72920 -30.68478 -29.64288 -27.43186 -26.99946 -25.54131 -23.73621 -23.57325 -22.80566 -21.43611 -21.09153 -19.48463 -18.92633 -18.48665 -17.68511 -17.41858 -17.11450 -16.73802 -16.58500 -16.41062 -16.11473 -15.89633 -15.63014 -15.49692 -15.25041 -14.85506 -14.84639 -14.41543 -13.92530 -13.55073 -13.52190 -13.39010 -13.31610 -13.24858 -13.06337 -12.93875 -12.86328 -12.71523 -12.40588 -12.07752 -12.03669 -11.83579 -11.27612 -11.03574 -10.85695 -10.45057 -10.12873 -9.90468 -9.57930 -8.56654 -8.48871 -6.26502 0.13912 0.26414 1.13470 1.38965 1.42981 1.58362 1.81550 1.94020 2.18147 2.43329 2.54106 2.64933 2.87017 3.07247 3.31377 3.44310 3.66641 3.81169 3.93298 4.15150 4.35321 4.39053 4.39970 4.43938 4.49173 4.55204 4.56253 4.66012 4.82508 4.87152 4.97814 5.01251 5.03280 5.13801 5.19739 5.26231 5.33741 5.40978 5.44464 5.79060 5.93656 5.95678 6.27798 6.64659 6.70807 7.27155 7.43807 7.64754 8.50712 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.002990 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.074504 B = 9361.633100 C = 9833.025754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.355 6.355 3 C 0.163 3.837 4 C -0.137 4.137 5 C 0.476 3.524 6 O -0.550 6.550 7 N -0.608 5.608 8 C -0.044 4.044 9 C -0.058 4.058 10 N -0.309 5.309 11 N -0.166 5.166 12 C -0.353 4.353 13 H 0.142 0.858 14 C -0.007 4.007 15 N -0.825 5.825 16 Si 1.021 2.979 17 H -0.240 1.240 18 H -0.273 1.273 19 H -0.272 1.272 20 C -0.080 4.080 21 C -0.163 4.163 22 C -0.085 4.085 23 C -0.133 4.133 24 C -0.080 4.080 25 C -0.176 4.176 26 C 0.109 3.891 27 F -0.143 7.143 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.418 0.582 35 H 0.163 0.837 36 H 0.276 0.724 37 H 0.187 0.813 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -12.508 -18.076 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.273 6.273 3 C 0.120 3.880 4 C -0.194 4.194 5 C 0.262 3.738 6 O -0.428 6.428 7 N -0.253 5.253 8 C -0.150 4.150 9 C -0.233 4.233 10 N -0.141 5.141 11 N 0.065 4.935 12 C -0.484 4.484 13 H 0.159 0.841 14 C -0.219 4.219 15 N -0.453 5.453 16 Si 0.839 3.161 17 H -0.162 1.162 18 H -0.198 1.198 19 H -0.197 1.197 20 C -0.230 4.230 21 C -0.165 4.165 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.097 4.097 25 C -0.195 4.195 26 C 0.090 3.910 27 F -0.122 7.122 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.255 0.745 35 H 0.180 0.820 36 H 0.086 0.914 37 H 0.204 0.796 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.183 0.817 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.758 -10.644 -17.401 20.742 hybrid contribution 0.146 0.000 0.663 0.679 sum 3.904 -10.644 -16.738 20.217 Atomic orbital electron populations 1.23463 0.79798 1.05489 1.01286 1.87986 1.21062 1.23730 1.94508 1.20283 0.96633 0.82754 0.88341 1.21847 0.88569 1.03766 1.05201 1.21579 0.79242 0.88589 0.84422 1.90644 1.53232 1.16743 1.82151 1.42502 1.60749 1.11590 1.10463 1.17340 1.15807 0.91420 0.90466 1.24080 1.06732 0.95070 0.97446 1.78156 1.25773 1.08070 1.02112 1.44851 1.35073 1.03911 1.09637 1.20681 1.43287 0.98781 0.85642 0.84065 1.26909 0.95624 0.93714 1.05638 1.70410 1.36230 0.99953 1.38673 0.84516 0.77630 0.80286 0.73636 1.16224 1.19836 1.19719 1.21964 1.13218 0.95299 0.92508 1.20093 1.04759 0.94227 0.97436 1.21340 0.95334 1.01234 0.92328 1.21591 1.00733 0.95289 0.97469 1.21470 0.94515 0.94701 0.99044 1.21437 1.03233 1.02040 0.92788 1.17851 0.95704 0.90732 0.86706 1.91497 1.77147 1.80809 1.62734 0.92291 0.85169 0.94761 0.89911 0.88073 0.91305 0.74487 0.82028 0.91405 0.79557 0.82446 0.81657 0.81715 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.10 9.12 113.37 1.03 0.94 16 2 O -0.35 -8.04 9.08 -148.98 -1.35 -9.39 16 3 C 0.16 4.54 0.80 -12.29 -0.01 4.53 16 4 C -0.14 -3.31 8.64 71.98 0.62 -2.69 16 5 C 0.48 17.72 5.46 87.66 0.48 18.20 16 6 O -0.55 -25.27 10.40 -3.12 -0.03 -25.30 16 7 N -0.61 -22.46 4.18 -303.93 -1.27 -23.73 16 8 C -0.04 -2.11 6.90 37.73 0.26 -1.85 16 9 C -0.06 -3.29 10.85 85.42 0.93 -2.37 16 10 N -0.31 -19.11 10.40 -56.47 -0.59 -19.70 16 11 N -0.17 -9.38 3.74 -190.02 -0.71 -10.09 16 12 C -0.35 -18.90 10.25 84.01 0.86 -18.04 16 13 H 0.14 6.55 7.83 -2.91 -0.02 6.52 16 14 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 15 N -0.82 -48.35 11.81 21.66 0.26 -48.10 16 16 Si 1.02 38.98 29.55 68.60 2.03 41.01 16 17 H -0.24 -8.15 7.11 99.48 0.71 -7.44 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 20 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 21 C -0.16 -4.42 4.42 -19.82 -0.09 -4.50 16 22 C -0.08 -1.69 7.70 22.26 0.17 -1.52 16 23 C -0.13 -2.06 10.04 22.27 0.22 -1.84 16 24 C -0.08 -1.33 10.04 22.26 0.22 -1.10 16 25 C -0.18 -4.14 10.03 22.31 0.22 -3.92 16 26 C 0.11 3.31 6.19 22.38 0.14 3.45 16 27 F -0.14 -5.29 12.89 44.97 0.58 -4.71 16 28 H 0.06 1.21 5.13 -2.39 -0.01 1.20 16 29 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.03 0.89 6.23 -2.39 -0.01 0.87 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.89 6.53 -2.39 -0.02 1.88 16 34 H 0.42 12.29 7.96 -92.70 -0.74 11.55 16 35 H 0.16 9.38 5.92 -2.91 -0.02 9.36 16 36 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.19 6.99 8.06 -2.91 -0.02 6.97 16 38 H 0.16 2.50 5.53 -2.91 -0.02 2.48 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -79.62 340.90 5.76 -73.85 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.36 Total: 39.61 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 6.49 Total: -13.46 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -2.31 Total: -101.61 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.38 Total: -34.69 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.58 Total: -4.71 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -79.62 5.76 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760212934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.959 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds