Wall clock time and date at job start Tue Mar 31 2020 17:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00467 * 2 1 4 4 C 1.53001 * 109.47301 * 55.54469 * 3 2 1 5 5 C 1.50701 * 109.47368 * 175.54615 * 3 2 1 6 6 O 1.21303 * 119.99911 * 145.00039 * 5 3 2 7 7 N 1.34776 * 119.99888 * 324.72550 * 5 3 2 8 8 C 1.40589 * 119.99887 * 180.02562 * 7 5 3 9 9 C 1.40657 * 126.08098 * 359.68581 * 8 7 5 10 10 N 1.30907 * 108.38418 * 179.81873 * 9 8 7 11 11 N 1.40066 * 108.40684 * 0.44157 * 10 9 8 12 12 C 1.37330 * 126.06866 * 179.69471 * 11 10 9 13 13 H 1.07997 * 119.99777 * 172.79380 * 12 11 10 14 14 C 1.38985 * 120.00160 * 352.79843 * 12 11 10 15 15 N 1.31295 * 119.99886 * 7.41406 * 14 12 11 16 16 Si 1.86799 * 120.00322 * 187.41473 * 14 12 11 17 17 H 1.48499 * 109.47174 * 94.94542 * 16 14 12 18 18 H 1.48497 * 109.47382 * 214.94646 * 16 14 12 19 19 H 1.48501 * 109.46832 * 334.94796 * 16 14 12 20 20 C 1.35677 * 126.08503 * 179.97438 * 8 7 5 21 21 C 1.50704 * 109.46841 * 295.54610 * 3 2 1 22 22 C 1.38219 * 120.01109 * 354.44642 * 21 3 2 23 23 C 1.38228 * 120.02210 * 179.72503 * 22 21 3 24 24 C 1.38270 * 120.05127 * 0.54665 * 23 22 21 25 25 C 1.38175 * 120.02390 * 359.71923 * 24 23 22 26 26 C 1.38439 * 120.01526 * 174.71342 * 21 3 2 27 27 F 1.35103 * 120.01999 * 359.97438 * 26 21 3 28 28 H 1.08996 * 109.47674 * 180.24174 * 1 2 3 29 29 H 1.09006 * 109.47099 * 300.24690 * 1 2 3 30 30 H 1.09004 * 109.47306 * 60.24218 * 1 2 3 31 31 H 1.09001 * 109.47408 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47166 * 300.00274 * 4 3 2 33 33 H 1.08996 * 109.46890 * 59.99881 * 4 3 2 34 34 H 0.97000 * 119.99831 * 359.97438 * 7 5 3 35 35 H 1.07994 * 125.80548 * 359.96818 * 9 8 7 36 36 H 0.97000 * 120.00460 * 180.02562 * 15 14 12 37 37 H 1.08003 * 126.24187 * 359.97438 * 20 8 7 38 38 H 1.07993 * 119.99092 * 359.97438 * 22 21 3 39 39 H 1.07994 * 119.97463 * 180.24849 * 23 22 21 40 40 H 1.08001 * 119.98888 * 179.75554 * 24 23 22 41 41 H 1.07998 * 120.01246 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4722 2.1033 1.1894 5 6 3.5086 1.1881 0.1103 6 8 4.2232 1.9793 -0.4683 7 7 4.0547 0.2074 0.8564 8 6 5.4525 0.0983 0.9597 9 6 6.3969 0.9344 0.3373 10 7 7.5946 0.5248 0.6713 11 7 7.4631 -0.5905 1.5084 12 6 8.4923 -1.3097 2.0646 13 1 8.2813 -2.0821 2.7894 14 6 9.8054 -1.0437 1.6949 15 7 10.0754 -0.0128 0.9279 16 14 11.1861 -2.1526 2.2892 17 1 11.4759 -3.1792 1.2561 18 1 12.4041 -1.3390 2.5338 19 1 10.7760 -2.8213 3.5501 20 6 6.1306 -0.8356 1.6731 21 6 1.6549 2.0135 -1.2820 22 6 0.9740 1.3394 -2.2782 23 6 0.6429 1.9904 -3.4518 24 6 1.0022 3.3129 -3.6353 25 6 1.6877 3.9871 -2.6429 26 6 2.0151 3.3377 -1.4645 27 9 2.6849 3.9960 -0.4933 28 1 -0.3634 -1.0276 0.0043 29 1 -0.3633 0.5177 0.8878 30 1 -0.3634 0.5101 -0.8922 31 1 1.9153 3.0992 1.1892 32 1 0.3884 2.1882 1.1096 33 1 1.7292 1.5911 2.1166 34 1 3.4832 -0.4227 1.3225 35 1 6.1722 1.7732 -0.3047 36 1 10.9917 0.1728 0.6695 37 1 5.6953 -1.6281 2.2638 38 1 0.6970 0.3051 -2.1380 39 1 0.1074 1.4641 -4.2281 40 1 0.7465 3.8193 -4.5542 41 1 1.9679 5.0202 -2.7862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760213278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:18 Heat of formation + Delta-G solvation = 7.589435 kcal Electronic energy + Delta-G solvation = -28798.882437 eV Core-core repulsion = 24596.608979 eV Total energy + Delta-G solvation = -4202.273458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -48.76948 -40.65376 -39.53614 -38.32102 -37.54913 -34.18972 -33.08312 -32.57206 -30.86846 -30.20231 -29.57918 -27.93681 -27.26385 -24.95094 -23.97374 -22.85482 -22.26137 -20.85953 -19.96897 -19.33213 -17.90721 -17.77672 -17.06121 -16.72829 -16.04761 -15.66489 -15.44638 -15.41191 -15.11459 -14.96264 -14.68090 -14.48075 -14.01295 -13.78541 -13.38297 -13.16335 -12.99929 -12.86516 -12.70521 -12.59625 -12.34350 -12.00968 -11.76279 -11.67207 -11.56322 -11.37194 -11.24264 -10.94322 -10.85194 -10.49984 -10.09107 -9.94365 -9.32735 -9.12219 -8.94410 -8.75397 -8.67188 -8.00524 -6.63902 -6.52448 -4.18480 1.02084 1.12995 2.71285 3.02069 3.07614 3.13068 3.36379 3.51706 3.68978 3.75383 3.92246 4.23294 4.35311 4.48168 4.66344 4.74400 4.77830 4.89554 5.04874 5.08711 5.10297 5.15687 5.19655 5.26854 5.41746 5.52309 5.59336 5.68868 5.92006 5.99012 6.02450 6.15392 6.25668 6.30158 6.52067 6.78961 6.79957 6.96348 7.01372 7.18540 7.28761 7.90678 8.23109 8.34035 8.66559 8.89024 9.43006 9.71908 10.44022 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.002913 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.767110 B = 9610.002627 C =10174.908549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.365 6.365 3 C 0.150 3.850 4 C -0.182 4.182 5 C 0.519 3.481 6 O -0.517 6.517 7 N -0.607 5.607 8 C -0.059 4.059 9 C -0.032 4.032 10 N -0.261 5.261 11 N -0.143 5.143 12 C -0.324 4.324 13 H 0.116 0.884 14 C 0.047 3.953 15 N -0.770 5.770 16 Si 0.934 3.066 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.264 1.264 20 C -0.080 4.080 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.163 4.163 26 C 0.145 3.855 27 F -0.122 7.122 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.402 0.598 35 H 0.175 0.825 36 H 0.274 0.726 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.525 2.247 -3.920 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.283 6.283 3 C 0.107 3.893 4 C -0.240 4.240 5 C 0.302 3.698 6 O -0.393 6.393 7 N -0.249 5.249 8 C -0.165 4.165 9 C -0.207 4.207 10 N -0.092 5.092 11 N 0.089 4.911 12 C -0.457 4.457 13 H 0.134 0.866 14 C -0.170 4.170 15 N -0.396 5.396 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.188 1.188 20 C -0.231 4.231 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.159 4.159 24 C -0.105 4.105 25 C -0.181 4.181 26 C 0.126 3.874 27 F -0.100 7.100 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.236 0.764 35 H 0.192 0.808 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.403 2.993 -4.508 20.144 hybrid contribution -0.700 -0.714 0.745 1.246 sum -20.103 2.279 -3.764 20.579 Atomic orbital electron populations 1.23178 0.80973 1.03293 1.01381 1.88023 1.20233 1.25297 1.94795 1.20375 0.92069 0.84195 0.92696 1.22519 1.02015 1.02381 0.97073 1.19422 0.87439 0.82253 0.80652 1.90653 1.60338 1.41887 1.46457 1.42384 1.05257 1.29689 1.47541 1.17301 0.81666 1.04958 1.12571 1.24090 0.89293 1.02601 1.04738 1.78236 1.18768 1.00158 1.12046 1.44541 1.02608 1.16796 1.27181 1.19864 0.84286 1.16641 1.24863 0.86636 1.25638 0.99009 0.96453 0.95925 1.70229 1.20692 1.21968 1.26727 0.85824 0.79564 0.79463 0.79357 1.19663 1.20149 1.18803 1.21262 0.85320 1.05051 1.11494 1.19987 1.03045 0.93325 0.97682 1.21066 0.96492 1.00305 0.92111 1.21128 1.02101 0.95070 0.97561 1.21018 0.96651 0.94582 0.98248 1.21141 1.02425 1.01440 0.93139 1.17346 0.93346 0.89876 0.86868 1.91509 1.77443 1.80323 1.60735 0.89011 0.93238 0.92460 0.89379 0.90932 0.90458 0.76410 0.80812 0.91518 0.83655 0.84094 0.85348 0.85152 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.48 101.05 0.96 1.02 16 2 O -0.36 -4.52 8.98 -35.23 -0.32 -4.84 16 3 C 0.15 2.14 0.79 -92.92 -0.07 2.06 16 4 C -0.18 -2.19 7.82 37.16 0.29 -1.90 16 5 C 0.52 9.90 6.58 -10.99 -0.07 9.82 16 6 O -0.52 -11.64 11.31 5.54 0.06 -11.58 16 7 N -0.61 -11.77 5.38 -10.00 -0.05 -11.83 16 8 C -0.06 -1.43 6.90 -83.84 -0.58 -2.01 16 9 C -0.03 -0.86 10.85 -17.03 -0.18 -1.05 16 10 N -0.26 -7.81 10.43 30.80 0.32 -7.49 16 11 N -0.14 -4.04 3.74 -11.41 -0.04 -4.08 16 12 C -0.32 -8.77 10.24 -14.81 -0.15 -8.92 16 13 H 0.12 2.79 7.84 -52.49 -0.41 2.38 16 14 C 0.05 1.23 5.49 -17.50 -0.10 1.14 16 15 N -0.77 -21.92 11.85 55.49 0.66 -21.26 16 16 Si 0.93 19.27 29.56 -169.99 -5.02 14.25 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 C -0.08 -1.96 11.49 -16.40 -0.19 -2.15 16 21 C -0.14 -1.92 4.33 -104.55 -0.45 -2.38 16 22 C -0.08 -0.94 7.65 -39.59 -0.30 -1.24 16 23 C -0.14 -1.36 10.04 -39.57 -0.40 -1.75 16 24 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 25 C -0.16 -1.92 10.03 -39.52 -0.40 -2.31 16 26 C 0.15 2.11 6.18 -39.42 -0.24 1.87 16 27 F -0.12 -2.01 13.17 2.25 0.03 -1.98 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.36 6.33 -51.93 -0.33 0.03 16 30 H 0.06 0.44 4.93 -51.93 -0.26 0.18 16 31 H 0.09 1.18 5.91 -51.93 -0.31 0.87 16 32 H 0.07 0.68 6.48 -51.92 -0.34 0.35 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.40 6.47 8.27 -40.82 -0.34 6.13 16 35 H 0.18 4.74 5.92 -52.49 -0.31 4.43 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.15 2.97 8.06 -52.48 -0.42 2.54 16 38 H 0.14 1.41 5.54 -52.49 -0.29 1.12 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -34.83 341.71 -5.75 -40.58 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.25 Total: 12.12 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.29 Total: -9.04 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.88 Total: -44.66 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.25 Total: -16.41 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.98 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.83 -5.75 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760213278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.173 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds