Wall clock time and date at job start Tue Mar 31 2020 17:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00467 * 2 1 4 4 C 1.53001 * 109.47301 * 55.54469 * 3 2 1 5 5 C 1.50701 * 109.47368 * 175.54615 * 3 2 1 6 6 O 1.21303 * 119.99911 * 145.00039 * 5 3 2 7 7 N 1.34776 * 119.99888 * 324.72550 * 5 3 2 8 8 C 1.40589 * 119.99887 * 180.02562 * 7 5 3 9 9 C 1.40657 * 126.08098 * 359.68581 * 8 7 5 10 10 N 1.30907 * 108.38418 * 179.81873 * 9 8 7 11 11 N 1.40066 * 108.40684 * 0.44157 * 10 9 8 12 12 C 1.37330 * 126.06866 * 179.69471 * 11 10 9 13 13 H 1.07997 * 119.99777 * 172.79380 * 12 11 10 14 14 C 1.38985 * 120.00160 * 352.79843 * 12 11 10 15 15 N 1.31295 * 119.99886 * 7.41406 * 14 12 11 16 16 Si 1.86799 * 120.00322 * 187.41473 * 14 12 11 17 17 H 1.48499 * 109.47174 * 94.94542 * 16 14 12 18 18 H 1.48497 * 109.47382 * 214.94646 * 16 14 12 19 19 H 1.48501 * 109.46832 * 334.94796 * 16 14 12 20 20 C 1.35677 * 126.08503 * 179.97438 * 8 7 5 21 21 C 1.50704 * 109.46841 * 295.54610 * 3 2 1 22 22 C 1.38219 * 120.01109 * 354.44642 * 21 3 2 23 23 C 1.38228 * 120.02210 * 179.72503 * 22 21 3 24 24 C 1.38270 * 120.05127 * 0.54665 * 23 22 21 25 25 C 1.38175 * 120.02390 * 359.71923 * 24 23 22 26 26 C 1.38439 * 120.01526 * 174.71342 * 21 3 2 27 27 F 1.35103 * 120.01999 * 359.97438 * 26 21 3 28 28 H 1.08996 * 109.47674 * 180.24174 * 1 2 3 29 29 H 1.09006 * 109.47099 * 300.24690 * 1 2 3 30 30 H 1.09004 * 109.47306 * 60.24218 * 1 2 3 31 31 H 1.09001 * 109.47408 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47166 * 300.00274 * 4 3 2 33 33 H 1.08996 * 109.46890 * 59.99881 * 4 3 2 34 34 H 0.97000 * 119.99831 * 359.97438 * 7 5 3 35 35 H 1.07994 * 125.80548 * 359.96818 * 9 8 7 36 36 H 0.97000 * 120.00460 * 180.02562 * 15 14 12 37 37 H 1.08003 * 126.24187 * 359.97438 * 20 8 7 38 38 H 1.07993 * 119.99092 * 359.97438 * 22 21 3 39 39 H 1.07994 * 119.97463 * 180.24849 * 23 22 21 40 40 H 1.08001 * 119.98888 * 179.75554 * 24 23 22 41 41 H 1.07998 * 120.01246 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4722 2.1033 1.1894 5 6 3.5086 1.1881 0.1103 6 8 4.2232 1.9793 -0.4683 7 7 4.0547 0.2074 0.8564 8 6 5.4525 0.0983 0.9597 9 6 6.3969 0.9344 0.3373 10 7 7.5946 0.5248 0.6713 11 7 7.4631 -0.5905 1.5084 12 6 8.4923 -1.3097 2.0646 13 1 8.2813 -2.0821 2.7894 14 6 9.8054 -1.0437 1.6949 15 7 10.0754 -0.0128 0.9279 16 14 11.1861 -2.1526 2.2892 17 1 11.4759 -3.1792 1.2561 18 1 12.4041 -1.3390 2.5338 19 1 10.7760 -2.8213 3.5501 20 6 6.1306 -0.8356 1.6731 21 6 1.6549 2.0135 -1.2820 22 6 0.9740 1.3394 -2.2782 23 6 0.6429 1.9904 -3.4518 24 6 1.0022 3.3129 -3.6353 25 6 1.6877 3.9871 -2.6429 26 6 2.0151 3.3377 -1.4645 27 9 2.6849 3.9960 -0.4933 28 1 -0.3634 -1.0276 0.0043 29 1 -0.3633 0.5177 0.8878 30 1 -0.3634 0.5101 -0.8922 31 1 1.9153 3.0992 1.1892 32 1 0.3884 2.1882 1.1096 33 1 1.7292 1.5911 2.1166 34 1 3.4832 -0.4227 1.3225 35 1 6.1722 1.7732 -0.3047 36 1 10.9917 0.1728 0.6695 37 1 5.6953 -1.6281 2.2638 38 1 0.6970 0.3051 -2.1380 39 1 0.1074 1.4641 -4.2281 40 1 0.7465 3.8193 -4.5542 41 1 1.9679 5.0202 -2.7862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760213278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:15 Heat of formation + Delta-G solvation = -16.321201 kcal Electronic energy + Delta-G solvation = -28799.919280 eV Core-core repulsion = 24596.608979 eV Total energy + Delta-G solvation = -4203.310301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.87455 -41.99188 -41.22814 -39.64660 -38.58813 -35.97290 -34.95434 -33.57453 -32.25447 -31.72344 -30.59136 -29.58118 -28.26419 -26.83694 -25.03172 -23.76050 -23.50509 -22.78527 -21.42852 -21.07290 -19.49212 -18.80142 -18.56831 -17.77857 -17.41556 -17.08323 -16.74363 -16.66581 -16.43715 -16.09942 -15.85776 -15.73064 -15.43519 -15.26437 -14.89059 -14.82659 -14.36842 -13.91732 -13.86517 -13.54556 -13.46219 -13.32906 -13.23200 -12.97823 -12.90276 -12.79469 -12.54965 -12.41861 -12.06339 -11.85497 -11.77035 -11.03869 -10.86665 -10.80763 -10.74073 -10.11223 -9.90679 -9.60305 -8.55132 -8.48344 -6.25379 0.12665 0.24943 1.14160 1.39570 1.43696 1.58330 1.82353 2.01040 2.21793 2.42431 2.61608 2.64906 2.92927 3.06833 3.28415 3.41541 3.71850 3.81124 3.90231 4.12925 4.36169 4.38189 4.41635 4.50705 4.52840 4.56795 4.59281 4.67656 4.83685 4.90041 4.99732 5.03861 5.06319 5.12190 5.18107 5.27644 5.33124 5.43062 5.44308 5.93299 5.94065 5.96166 6.28889 6.69098 6.71668 7.30645 7.45407 7.65807 8.51530 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.002913 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.767110 B = 9610.002627 C =10174.908549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.377 6.377 3 C 0.164 3.836 4 C -0.179 4.179 5 C 0.512 3.488 6 O -0.555 6.555 7 N -0.603 5.603 8 C -0.046 4.046 9 C -0.058 4.058 10 N -0.310 5.310 11 N -0.166 5.166 12 C -0.355 4.355 13 H 0.142 0.858 14 C -0.007 4.007 15 N -0.824 5.824 16 Si 1.021 2.979 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.242 1.242 20 C -0.078 4.078 21 C -0.160 4.160 22 C -0.088 4.088 23 C -0.132 4.132 24 C -0.080 4.080 25 C -0.173 4.173 26 C 0.107 3.893 27 F -0.145 7.145 28 H 0.115 0.885 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.420 0.580 35 H 0.164 0.836 36 H 0.277 0.723 37 H 0.188 0.812 38 H 0.156 0.844 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.045 0.118 -4.033 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.296 6.296 3 C 0.120 3.880 4 C -0.236 4.236 5 C 0.298 3.702 6 O -0.434 6.434 7 N -0.247 5.247 8 C -0.152 4.152 9 C -0.233 4.233 10 N -0.142 5.142 11 N 0.065 4.935 12 C -0.486 4.486 13 H 0.159 0.841 14 C -0.218 4.218 15 N -0.452 5.452 16 Si 0.840 3.160 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.164 1.164 20 C -0.228 4.228 21 C -0.161 4.161 22 C -0.105 4.105 23 C -0.150 4.150 24 C -0.098 4.098 25 C -0.192 4.192 26 C 0.088 3.912 27 F -0.124 7.124 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.257 0.743 35 H 0.181 0.819 36 H 0.086 0.914 37 H 0.205 0.795 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.183 0.817 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.004 0.854 -4.608 22.497 hybrid contribution -0.123 -0.014 0.680 0.692 sum -22.126 0.839 -3.928 22.488 Atomic orbital electron populations 1.23474 0.78467 1.05158 1.02427 1.87989 1.22760 1.23838 1.94986 1.20001 0.88398 0.85477 0.94075 1.22513 1.03702 1.00976 0.96441 1.20447 0.89846 0.80865 0.79038 1.90631 1.62196 1.43026 1.47503 1.42380 1.03411 1.30666 1.48214 1.17389 0.83688 1.03404 1.10724 1.24082 0.90059 1.03355 1.05838 1.78131 1.20259 1.01913 1.13900 1.44849 1.04184 1.16827 1.27664 1.20648 0.84842 1.17287 1.25833 0.84100 1.26923 1.01799 0.97671 0.95425 1.70411 1.21487 1.24500 1.28815 0.84554 0.75084 0.76879 0.79514 1.19162 1.20110 1.16440 1.21971 0.84248 1.05597 1.11034 1.20101 1.04470 0.93264 0.98309 1.21352 0.96101 1.00966 0.92109 1.21595 1.00877 0.95054 0.97459 1.21473 0.94943 0.94761 0.98625 1.21439 1.02677 1.02236 0.92818 1.17824 0.94879 0.90827 0.87682 1.91444 1.78313 1.80820 1.61817 0.86702 0.92021 0.91593 0.91304 0.87926 0.89883 0.74313 0.81940 0.91369 0.79472 0.82627 0.81762 0.81651 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.48 113.37 1.07 1.07 16 2 O -0.38 -8.55 8.98 -148.98 -1.34 -9.89 16 3 C 0.16 4.57 0.79 -12.28 -0.01 4.56 16 4 C -0.18 -4.19 7.82 71.98 0.56 -3.62 16 5 C 0.51 19.93 6.58 87.66 0.58 20.51 16 6 O -0.56 -26.32 11.31 -3.10 -0.04 -26.35 16 7 N -0.60 -23.39 5.38 -303.92 -1.63 -25.02 16 8 C -0.05 -2.26 6.90 37.73 0.26 -2.00 16 9 C -0.06 -3.36 10.85 85.42 0.93 -2.43 16 10 N -0.31 -19.46 10.43 -56.46 -0.59 -20.05 16 11 N -0.17 -9.57 3.74 -190.02 -0.71 -10.28 16 12 C -0.36 -19.29 10.24 84.01 0.86 -18.43 16 13 H 0.14 6.63 7.84 -2.91 -0.02 6.61 16 14 C -0.01 -0.35 5.49 84.95 0.47 0.12 16 15 N -0.82 -48.75 11.85 21.66 0.26 -48.49 16 16 Si 1.02 39.38 29.56 68.60 2.03 41.41 16 17 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.24 -8.35 7.11 99.48 0.71 -7.65 16 20 C -0.08 -3.80 11.49 83.38 0.96 -2.84 16 21 C -0.16 -4.33 4.33 -19.82 -0.09 -4.42 16 22 C -0.09 -1.80 7.65 22.26 0.17 -1.63 16 23 C -0.13 -2.10 10.04 22.28 0.22 -1.87 16 24 C -0.08 -1.33 10.04 22.26 0.22 -1.11 16 25 C -0.17 -3.98 10.03 22.31 0.22 -3.75 16 26 C 0.11 3.17 6.18 22.37 0.14 3.31 16 27 F -0.15 -5.13 13.17 44.97 0.59 -4.53 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.68 6.33 -2.38 -0.02 0.67 16 30 H 0.07 0.78 4.93 -2.38 -0.01 0.77 16 31 H 0.07 1.90 5.91 -2.39 -0.01 1.89 16 32 H 0.10 1.74 6.48 -2.38 -0.02 1.72 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.42 12.99 8.27 -92.71 -0.77 12.23 16 35 H 0.16 9.57 5.92 -2.91 -0.02 9.56 16 36 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.19 7.22 8.06 -2.91 -0.02 7.20 16 38 H 0.16 2.65 5.54 -2.91 -0.02 2.63 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -81.93 341.71 5.48 -76.45 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.34 Total: 39.31 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 6.57 Total: -12.55 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -2.68 Total: -103.84 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.37 Total: -36.24 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.59 Total: -4.53 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -81.93 5.48 -76.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760213278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.130 kcal (2) G-P(sol) polarization free energy of solvation -81.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds