Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47333 * 2 1 4 4 C 1.50697 * 109.47290 * 240.00087 * 2 1 3 5 5 O 1.21298 * 119.99883 * 240.00630 * 4 2 1 6 6 N 1.34776 * 120.00390 * 59.99855 * 4 2 1 7 7 C 1.40085 * 120.00210 * 175.63778 * 6 4 2 8 8 C 1.38714 * 120.07526 * 34.60095 * 7 6 4 9 9 C 1.38185 * 120.01676 * 179.69570 * 8 7 6 10 10 C 1.38557 * 120.17824 * 0.59943 * 9 8 7 11 11 F 1.35097 * 119.92135 * 179.69665 * 10 9 8 12 12 C 1.38343 * 120.15163 * 359.67676 * 10 9 8 13 13 C 1.38738 * 119.97821 * 0.02562 * 12 10 9 14 14 O 1.35773 * 120.08761 * 180.02562 * 13 12 10 15 15 C 1.34803 * 116.99985 * 5.41988 * 14 13 12 16 16 H 1.08001 * 120.00032 * 354.96226 * 15 14 13 17 17 C 1.38643 * 120.00042 * 174.95387 * 15 14 13 18 18 N 1.31574 * 120.00084 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99658 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47302 * 89.99960 * 19 17 15 21 21 H 1.48497 * 109.46950 * 209.99541 * 19 17 15 22 22 H 1.48498 * 109.47590 * 329.99854 * 19 17 15 23 23 C 1.50706 * 109.46949 * 119.99996 * 2 1 3 24 24 C 1.39867 * 126.03894 * 59.68984 * 23 2 1 25 25 N 1.30835 * 108.19920 * 179.82034 * 24 23 2 26 26 N 1.40079 * 108.20767 * 0.43766 * 25 24 23 27 27 C 1.46502 * 126.04048 * 179.74071 * 26 25 24 28 28 C 1.34951 * 107.92637 * 359.71944 * 26 25 24 29 29 H 1.09001 * 109.46861 * 59.99937 * 1 2 3 30 30 H 1.08990 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47128 * 300.00255 * 1 2 3 32 32 H 0.97007 * 119.99505 * 355.63674 * 6 4 2 33 33 H 1.07993 * 119.98653 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.91183 * 180.27165 * 9 8 7 35 35 H 1.08003 * 120.00964 * 180.02562 * 12 10 9 36 36 H 0.96994 * 120.00096 * 180.02562 * 18 17 15 37 37 H 1.07997 * 125.89892 * 359.97438 * 24 23 2 38 38 H 1.08992 * 109.47031 * 269.97813 * 27 26 25 39 39 H 1.09005 * 109.46878 * 29.97951 * 27 26 25 40 40 H 1.09005 * 109.47113 * 149.97411 * 27 26 25 41 41 H 1.07997 * 126.12683 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.2474 -0.8545 -3.5969 8 6 2.4835 -2.2212 -3.6143 9 6 3.0109 -2.8173 -4.7440 10 6 3.3168 -2.0513 -5.8573 11 9 3.8379 -2.6384 -6.9568 12 6 3.0895 -0.6867 -5.8457 13 6 2.5546 -0.0826 -4.7171 14 8 2.3301 1.2564 -4.7035 15 6 2.5426 1.9243 -5.8550 16 1 2.9536 1.4087 -6.7104 17 6 2.2335 3.2731 -5.9413 18 7 2.4405 3.9248 -7.0654 19 14 1.5231 4.1649 -4.4617 20 1 2.6286 4.7250 -3.6435 21 1 0.6421 5.2672 -4.9242 22 1 0.7339 3.2116 -3.6409 23 6 2.0323 -0.7104 1.2305 24 6 1.7685 -2.0391 1.5790 25 7 2.3775 -2.2939 2.7086 26 7 3.0408 -1.1309 3.1203 27 6 3.8406 -0.9802 4.3385 28 6 2.8135 -0.1739 2.1964 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.0982 0.5000 -2.5446 33 1 2.2510 -2.8203 -2.7464 34 1 3.1900 -3.8822 -4.7573 35 1 3.3285 -0.0919 -6.7150 36 1 2.2245 4.8685 -7.1256 37 1 1.1680 -2.7351 1.0122 38 1 3.2001 -0.6459 5.1545 39 1 4.2904 -1.9384 4.5986 40 1 4.6264 -0.2442 4.1684 41 1 3.1883 0.8386 2.2230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760786376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = 3.334446 kcal Electronic energy + Delta-G solvation = -27998.442471 eV Core-core repulsion = 23795.984503 eV Total energy + Delta-G solvation = -4202.457968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.29287 -41.40216 -40.15681 -38.75592 -36.53204 -34.49979 -34.17986 -32.67040 -32.51517 -29.73024 -29.54799 -28.36390 -26.65064 -25.47699 -24.47231 -22.57393 -21.69931 -21.22168 -20.71664 -19.51727 -18.35016 -18.02488 -17.22747 -16.71239 -16.49068 -15.61262 -15.53456 -15.34775 -15.02232 -14.70333 -14.58927 -14.17663 -14.11132 -14.07462 -13.69104 -13.49873 -13.28564 -13.06037 -12.99638 -12.75877 -12.45817 -12.42367 -12.23685 -11.89439 -11.75317 -11.65637 -11.40651 -10.97079 -10.79786 -10.57503 -10.47596 -9.75632 -9.73988 -9.48627 -9.32838 -9.02226 -8.46928 -7.98791 -7.26595 -6.56049 -4.23586 1.71243 1.80140 2.01122 2.41883 2.70095 2.90555 3.09453 3.12273 3.20129 3.49580 4.06862 4.23271 4.34024 4.51439 4.67578 4.73941 4.87447 4.90348 4.92466 4.97770 5.06527 5.12894 5.19577 5.31038 5.51744 5.59183 5.60932 5.68179 5.79584 5.91363 5.94333 6.10371 6.12101 6.41450 6.58115 6.72338 6.81471 6.85261 6.88815 6.98946 7.44315 7.61750 7.63572 7.79336 7.85802 8.46194 8.76805 9.32009 10.51142 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.003733 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.818428 B = 7497.874208 C = 9473.953737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.030 4.030 3 H 0.103 0.897 4 C 0.514 3.486 5 O -0.523 6.523 6 N -0.654 5.654 7 C 0.060 3.940 8 C -0.050 4.050 9 C -0.222 4.222 10 C 0.129 3.871 11 F -0.149 7.149 12 C -0.247 4.247 13 C 0.165 3.835 14 O -0.208 6.208 15 C -0.392 4.392 16 H 0.109 0.891 17 C 0.066 3.934 18 N -0.872 5.872 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.260 1.260 23 C -0.213 4.213 24 C 0.082 3.918 25 N -0.303 5.303 26 N -0.381 5.381 27 C 0.104 3.896 28 C 0.060 3.940 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.410 0.590 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.282 0.718 37 H 0.179 0.821 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 -5.339 18.093 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.052 4.052 3 H 0.121 0.879 4 C 0.301 3.699 5 O -0.398 6.398 6 N -0.299 5.299 7 C -0.034 4.034 8 C -0.070 4.070 9 C -0.242 4.242 10 C 0.110 3.890 11 F -0.128 7.128 12 C -0.267 4.267 13 C 0.111 3.889 14 O -0.112 6.112 15 C -0.467 4.467 16 H 0.126 0.874 17 C -0.139 4.139 18 N -0.509 5.509 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.184 1.184 23 C -0.225 4.225 24 C -0.104 4.104 25 N -0.124 5.124 26 N -0.163 5.163 27 C -0.037 4.037 28 C -0.086 4.086 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.196 0.804 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.997 -6.507 19.277 20.443 hybrid contribution -0.366 1.549 -0.649 1.719 sum -2.363 -4.958 18.627 19.420 Atomic orbital electron populations 1.21789 0.92332 1.02981 1.02761 1.19510 0.97073 0.99487 0.89155 0.87914 1.20644 0.80189 0.85018 0.84092 1.90668 1.37248 1.25557 1.86337 1.43194 1.47081 1.35710 1.03925 1.16896 1.08621 0.91082 0.86816 1.20651 0.97138 0.91788 0.97467 1.20561 1.10453 0.99847 0.93389 1.17476 0.97495 0.90901 0.83175 1.91426 1.84456 1.84491 1.52388 1.20985 1.10751 0.93442 1.01549 1.18551 0.94082 0.83844 0.92443 1.83516 1.76710 1.14251 1.36724 1.20775 1.43780 0.93156 0.88982 0.87402 1.24483 0.96183 0.95433 0.97783 1.69645 1.45584 1.10639 1.25008 0.86172 0.79492 0.79276 0.81827 1.19792 1.20654 1.18379 1.19409 1.08611 0.95590 0.98860 1.23597 0.98177 0.95565 0.93092 1.77345 1.13640 1.05668 1.15763 1.48359 1.40542 1.08299 1.19091 1.21804 0.94311 1.04023 0.83587 1.22247 0.99791 0.95730 0.90846 0.91708 0.91825 0.91331 0.75367 0.83922 0.85770 0.83372 0.90804 0.80437 0.90966 0.89416 0.89621 0.81041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.97 37.16 0.33 -0.96 16 2 C -0.03 -0.34 3.09 -92.92 -0.29 -0.62 16 3 H 0.10 1.03 8.11 -51.93 -0.42 0.60 16 4 C 0.51 7.79 6.95 -10.99 -0.08 7.71 16 5 O -0.52 -9.41 12.80 5.54 0.07 -9.34 16 6 N -0.65 -10.64 5.11 -9.72 -0.05 -10.69 16 7 C 0.06 1.15 6.33 -83.45 -0.53 0.62 16 8 C -0.05 -0.91 8.70 -39.43 -0.34 -1.25 16 9 C -0.22 -3.97 10.02 -39.48 -0.40 -4.37 16 10 C 0.13 2.54 7.29 -39.43 -0.29 2.25 16 11 F -0.15 -2.85 17.26 2.25 0.04 -2.82 16 12 C -0.25 -5.30 9.14 -39.36 -0.36 -5.66 16 13 C 0.17 3.59 6.66 -38.94 -0.26 3.33 16 14 O -0.21 -4.93 8.15 0.05 0.00 -4.93 16 15 C -0.39 -10.30 9.95 30.88 0.31 -9.99 16 16 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 17 C 0.07 1.72 5.49 -17.51 -0.10 1.62 16 18 N -0.87 -23.94 13.96 55.48 0.77 -23.17 16 19 Si 0.91 19.63 28.62 -169.99 -4.86 14.77 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 C -0.21 -2.57 4.36 -105.05 -0.46 -3.03 16 24 C 0.08 1.07 10.78 -17.37 -0.19 0.89 16 25 N -0.30 -4.15 12.58 30.62 0.39 -3.76 16 26 N -0.38 -4.22 4.01 -68.16 -0.27 -4.49 16 27 C 0.10 0.67 11.47 59.85 0.69 1.36 16 28 C 0.06 0.64 11.38 -17.22 -0.20 0.44 16 29 H 0.06 0.56 7.47 -51.93 -0.39 0.18 16 30 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.41 6.11 7.87 -40.82 -0.32 5.79 16 33 H 0.14 2.47 6.19 -52.49 -0.32 2.14 16 34 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.15 3.34 5.64 -52.48 -0.30 3.05 16 36 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -31.85 358.19 -5.21 -37.07 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.55 Total: 9.62 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.15 Total: -7.66 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.84 Total: -42.11 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.26 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.86 Total: 14.77 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.85 -5.21 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760786376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.403 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds