Wall clock time and date at job start Tue Mar 31 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47333 * 2 1 4 4 C 1.50697 * 109.47290 * 240.00087 * 2 1 3 5 5 O 1.21298 * 119.99883 * 240.00630 * 4 2 1 6 6 N 1.34776 * 120.00390 * 59.99855 * 4 2 1 7 7 C 1.40085 * 120.00210 * 175.63778 * 6 4 2 8 8 C 1.38714 * 120.07526 * 34.60095 * 7 6 4 9 9 C 1.38185 * 120.01676 * 179.69570 * 8 7 6 10 10 C 1.38557 * 120.17824 * 0.59943 * 9 8 7 11 11 F 1.35097 * 119.92135 * 179.69665 * 10 9 8 12 12 C 1.38343 * 120.15163 * 359.67676 * 10 9 8 13 13 C 1.38738 * 119.97821 * 0.02562 * 12 10 9 14 14 O 1.35773 * 120.08761 * 180.02562 * 13 12 10 15 15 C 1.34803 * 116.99985 * 5.41988 * 14 13 12 16 16 H 1.08001 * 120.00032 * 354.96226 * 15 14 13 17 17 C 1.38643 * 120.00042 * 174.95387 * 15 14 13 18 18 N 1.31574 * 120.00084 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99658 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47302 * 89.99960 * 19 17 15 21 21 H 1.48497 * 109.46950 * 209.99541 * 19 17 15 22 22 H 1.48498 * 109.47590 * 329.99854 * 19 17 15 23 23 C 1.50706 * 109.46949 * 119.99996 * 2 1 3 24 24 C 1.39867 * 126.03894 * 59.68984 * 23 2 1 25 25 N 1.30835 * 108.19920 * 179.82034 * 24 23 2 26 26 N 1.40079 * 108.20767 * 0.43766 * 25 24 23 27 27 C 1.46502 * 126.04048 * 179.74071 * 26 25 24 28 28 C 1.34951 * 107.92637 * 359.71944 * 26 25 24 29 29 H 1.09001 * 109.46861 * 59.99937 * 1 2 3 30 30 H 1.08990 * 109.47072 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47128 * 300.00255 * 1 2 3 32 32 H 0.97007 * 119.99505 * 355.63674 * 6 4 2 33 33 H 1.07993 * 119.98653 * 359.97438 * 8 7 6 34 34 H 1.08000 * 119.91183 * 180.27165 * 9 8 7 35 35 H 1.08003 * 120.00964 * 180.02562 * 12 10 9 36 36 H 0.96994 * 120.00096 * 180.02562 * 18 17 15 37 37 H 1.07997 * 125.89892 * 359.97438 * 24 23 2 38 38 H 1.08992 * 109.47031 * 269.97813 * 27 26 25 39 39 H 1.09005 * 109.46878 * 29.97951 * 27 26 25 40 40 H 1.09005 * 109.47113 * 149.97411 * 27 26 25 41 41 H 1.07997 * 126.12683 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.2474 -0.8545 -3.5969 8 6 2.4835 -2.2212 -3.6143 9 6 3.0109 -2.8173 -4.7440 10 6 3.3168 -2.0513 -5.8573 11 9 3.8379 -2.6384 -6.9568 12 6 3.0895 -0.6867 -5.8457 13 6 2.5546 -0.0826 -4.7171 14 8 2.3301 1.2564 -4.7035 15 6 2.5426 1.9243 -5.8550 16 1 2.9536 1.4087 -6.7104 17 6 2.2335 3.2731 -5.9413 18 7 2.4405 3.9248 -7.0654 19 14 1.5231 4.1649 -4.4617 20 1 2.6286 4.7250 -3.6435 21 1 0.6421 5.2672 -4.9242 22 1 0.7339 3.2116 -3.6409 23 6 2.0323 -0.7104 1.2305 24 6 1.7685 -2.0391 1.5790 25 7 2.3775 -2.2939 2.7086 26 7 3.0408 -1.1309 3.1203 27 6 3.8406 -0.9802 4.3385 28 6 2.8135 -0.1739 2.1964 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.0982 0.5000 -2.5446 33 1 2.2510 -2.8203 -2.7464 34 1 3.1900 -3.8822 -4.7573 35 1 3.3285 -0.0919 -6.7150 36 1 2.2245 4.8685 -7.1256 37 1 1.1680 -2.7351 1.0122 38 1 3.2001 -0.6459 5.1545 39 1 4.2904 -1.9384 4.5986 40 1 4.6264 -0.2442 4.1684 41 1 3.1883 0.8386 2.2230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760786376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:31 Heat of formation + Delta-G solvation = -16.648952 kcal Electronic energy + Delta-G solvation = -27999.309016 eV Core-core repulsion = 23795.984503 eV Total energy + Delta-G solvation = -4203.324513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.86674 -42.28969 -41.54956 -40.24123 -38.13557 -35.61030 -35.32812 -34.45485 -33.45728 -31.24503 -30.58842 -29.73461 -27.34389 -27.30722 -25.47340 -24.02955 -23.23044 -22.12475 -21.78608 -20.59412 -20.12030 -19.63705 -18.50412 -18.03748 -17.41136 -17.21313 -16.91694 -16.60438 -16.28238 -15.93855 -15.83446 -15.65818 -15.53962 -15.20255 -15.04178 -14.86330 -14.79564 -14.22741 -13.94682 -13.78102 -13.59835 -13.53489 -13.33774 -13.18607 -13.01997 -12.57671 -12.52415 -12.47576 -12.33517 -12.09470 -11.62342 -11.42778 -11.15226 -10.91647 -10.66749 -10.28273 -9.62171 -9.30172 -8.82944 -8.49484 -6.24663 0.14512 0.40387 0.99707 1.37670 1.43258 1.56185 1.63875 1.73647 1.80113 2.29621 2.30098 2.61521 2.82329 3.01205 3.37024 3.62633 3.70989 3.92280 4.04589 4.13681 4.22981 4.26199 4.29597 4.41348 4.46256 4.47601 4.61902 4.71498 4.87265 4.87423 4.89330 5.04273 5.13751 5.17557 5.21250 5.29023 5.38466 5.48475 5.61955 5.71508 5.82871 6.08105 6.19270 6.53546 6.78269 6.81836 7.21430 7.44478 8.61355 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010788 B = 0.003733 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.818428 B = 7497.874208 C = 9473.953737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 H 0.124 0.876 4 C 0.515 3.485 5 O -0.551 6.551 6 N -0.654 5.654 7 C 0.074 3.926 8 C -0.051 4.051 9 C -0.196 4.196 10 C 0.117 3.883 11 F -0.147 7.147 12 C -0.259 4.259 13 C 0.141 3.859 14 O -0.216 6.216 15 C -0.403 4.403 16 H 0.077 0.923 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.971 3.029 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.236 1.236 23 C -0.234 4.234 24 C 0.067 3.933 25 N -0.340 5.340 26 N -0.383 5.383 27 C 0.094 3.906 28 C 0.066 3.934 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.418 0.582 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.286 0.714 37 H 0.178 0.822 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -5.340 21.309 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 H 0.142 0.858 4 C 0.304 3.696 5 O -0.428 6.428 6 N -0.299 5.299 7 C -0.021 4.021 8 C -0.071 4.071 9 C -0.216 4.216 10 C 0.098 3.902 11 F -0.126 7.126 12 C -0.280 4.280 13 C 0.089 3.911 14 O -0.123 6.123 15 C -0.479 4.479 16 H 0.094 0.906 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.246 4.246 24 C -0.118 4.118 25 N -0.162 5.162 26 N -0.165 5.165 27 C -0.046 4.046 28 C -0.081 4.081 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.256 0.744 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.195 0.805 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.599 -6.555 22.524 23.602 hybrid contribution -0.081 1.278 -1.579 2.033 sum -2.680 -5.277 20.945 21.765 Atomic orbital electron populations 1.21797 0.90618 1.03179 1.03921 1.19524 0.98344 0.99678 0.86582 0.85813 1.21413 0.79156 0.84521 0.84461 1.90651 1.38493 1.26985 1.86678 1.43316 1.47165 1.35962 1.03505 1.17056 1.06880 0.91302 0.86873 1.20898 0.96818 0.91435 0.97938 1.20945 1.07405 1.01279 0.91982 1.17524 0.98367 0.90318 0.84029 1.91428 1.84480 1.84243 1.52444 1.20990 1.11367 0.94458 1.01175 1.18865 0.95081 0.83598 0.93572 1.83465 1.78500 1.15030 1.35260 1.20646 1.44296 0.93763 0.89223 0.90553 1.25394 0.96443 0.96012 1.00936 1.69749 1.47680 1.11233 1.27415 0.85209 0.79113 0.78317 0.78176 1.19201 1.19950 1.15922 1.19563 1.09861 0.95420 0.99711 1.23729 0.98451 0.96378 0.93241 1.77270 1.14933 1.07538 1.16482 1.48744 1.40050 1.07619 1.20065 1.22161 0.94924 1.04850 0.82625 1.22831 0.98441 0.96906 0.89941 0.91070 0.92202 0.89597 0.74427 0.82445 0.82476 0.85658 0.90447 0.80529 0.89224 0.89630 0.87012 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.97 71.98 0.65 -1.45 16 2 C -0.02 -0.37 3.09 -12.28 -0.04 -0.41 16 3 H 0.12 1.95 8.11 -2.38 -0.02 1.93 16 4 C 0.52 14.39 6.95 87.66 0.61 15.00 16 5 O -0.55 -18.75 12.80 -3.09 -0.04 -18.79 16 6 N -0.65 -19.87 5.11 -303.04 -1.55 -21.42 16 7 C 0.07 2.73 6.33 38.23 0.24 2.97 16 8 C -0.05 -1.72 8.70 22.37 0.19 -1.53 16 9 C -0.20 -6.57 10.02 22.33 0.22 -6.35 16 10 C 0.12 4.56 7.29 22.37 0.16 4.72 16 11 F -0.15 -5.59 17.26 44.97 0.78 -4.81 16 12 C -0.26 -11.49 9.14 22.41 0.20 -11.28 16 13 C 0.14 6.17 6.66 22.69 0.15 6.33 16 14 O -0.22 -10.38 8.15 -22.72 -0.19 -10.57 16 15 C -0.40 -22.08 9.95 67.92 0.68 -21.40 16 16 H 0.08 4.53 5.44 -2.91 -0.02 4.51 16 17 C 0.01 0.61 5.49 84.83 0.47 1.07 16 18 N -0.92 -52.50 13.96 21.61 0.30 -52.20 16 19 Si 0.97 39.89 28.62 68.60 1.96 41.86 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 23 C -0.23 -5.05 4.36 -20.14 -0.09 -5.14 16 24 C 0.07 1.68 10.78 85.24 0.92 2.60 16 25 N -0.34 -8.92 12.58 -57.03 -0.72 -9.64 16 26 N -0.38 -7.55 4.01 -369.56 -1.48 -9.04 16 27 C 0.09 0.95 11.47 127.77 1.47 2.42 16 28 C 0.07 1.18 11.38 83.54 0.95 2.13 16 29 H 0.07 1.00 7.47 -2.39 -0.02 0.98 16 30 H 0.06 0.95 8.02 -2.39 -0.02 0.94 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.42 11.42 7.87 -92.70 -0.73 10.69 16 33 H 0.16 5.02 6.19 -2.91 -0.02 5.00 16 34 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.13 6.10 5.64 -2.91 -0.02 6.09 16 36 H 0.29 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.18 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -71.56 358.19 6.22 -65.34 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.37 Total: 29.57 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 6.79 Total: -10.30 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.45 Total: -92.29 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.22 Total: -29.36 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.78 Total: -4.81 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.96 Total: 41.86 kcal Total: -71.56 6.22 -65.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760786376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.688 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds