Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47146 * 2 1 4 4 C 1.50700 * 109.46797 * 120.00123 * 2 1 3 5 5 O 1.21301 * 119.99692 * 119.99864 * 4 2 1 6 6 N 1.34775 * 120.00527 * 299.99536 * 4 2 1 7 7 C 1.40081 * 120.00320 * 175.91049 * 6 4 2 8 8 C 1.38709 * 120.07398 * 34.56705 * 7 6 4 9 9 C 1.38187 * 120.02009 * 179.69779 * 8 7 6 10 10 C 1.38555 * 120.17335 * 0.60049 * 9 8 7 11 11 F 1.35108 * 119.92282 * 179.70221 * 10 9 8 12 12 C 1.38337 * 120.15695 * 359.67514 * 10 9 8 13 13 C 1.38743 * 119.97346 * 0.02562 * 12 10 9 14 14 O 1.35775 * 120.08370 * 179.97438 * 13 12 10 15 15 C 1.34804 * 117.00500 * 5.44828 * 14 13 12 16 16 H 1.08004 * 119.99514 * 354.95413 * 15 14 13 17 17 C 1.38639 * 120.00593 * 174.94901 * 15 14 13 18 18 N 1.31574 * 119.99374 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00230 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47003 * 119.99990 * 19 17 15 22 22 H 1.48504 * 109.47181 * 240.00173 * 19 17 15 23 23 C 1.50699 * 109.47010 * 239.99980 * 2 1 3 24 24 C 1.39864 * 126.03929 * 299.69555 * 23 2 1 25 25 N 1.30845 * 108.20354 * 179.81593 * 24 23 2 26 26 N 1.40091 * 108.20107 * 0.43646 * 25 24 23 27 27 C 1.46496 * 126.03621 * 179.74126 * 26 25 24 28 28 C 1.34949 * 107.92458 * 359.71782 * 26 25 24 29 29 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46857 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47348 * 59.99452 * 1 2 3 32 32 H 0.97006 * 119.99289 * 355.64377 * 6 4 2 33 33 H 1.08004 * 119.99322 * 359.96861 * 8 7 6 34 34 H 1.08002 * 119.91575 * 180.29608 * 9 8 7 35 35 H 1.07998 * 120.01678 * 180.02562 * 12 10 9 36 36 H 0.96995 * 119.99639 * 180.02562 * 18 17 15 37 37 H 1.08001 * 125.90307 * 0.02562 * 24 23 2 38 38 H 1.09002 * 109.46710 * 269.97324 * 27 26 25 39 39 H 1.09003 * 109.47321 * 29.97143 * 27 26 25 40 40 H 1.08997 * 109.47266 * 149.97877 * 27 26 25 41 41 H 1.07998 * 126.12613 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6967 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1014 -0.9581 3.5971 8 6 3.3139 -1.6317 3.6130 9 6 3.7049 -2.3247 4.7428 10 6 2.8830 -2.3595 5.8577 11 9 3.2676 -3.0436 6.9575 12 6 1.6697 -1.6950 5.8477 13 6 1.2737 -0.9922 4.7190 14 8 0.0831 -0.3396 4.7065 15 6 -0.6156 -0.3188 5.8591 16 1 -0.2626 -0.8755 6.7147 17 6 -1.7873 0.4171 5.9464 18 7 -2.2176 1.0949 4.9040 19 14 -2.7551 0.4464 7.5439 20 1 -2.0637 -0.3908 8.5569 21 1 -2.8510 1.8432 8.0389 22 1 -4.1195 -0.0893 7.3060 23 6 2.0324 -0.7104 -1.2305 24 6 1.7784 -2.0425 -1.5728 25 7 2.3775 -2.2940 -2.7086 26 7 3.0409 -1.1308 -3.1203 27 6 3.8399 -0.9798 -4.3389 28 6 2.8135 -0.1738 -2.1964 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.2026 0.5738 2.5446 33 1 3.9545 -1.6111 2.7438 34 1 4.6515 -2.8447 4.7551 35 1 1.0310 -1.7233 6.7182 36 1 -3.0371 1.6101 4.9652 37 1 1.1869 -2.7418 -1.0005 38 1 4.8773 -1.2389 -4.1275 39 1 3.4507 -1.6414 -5.1129 40 1 3.7862 0.0530 -4.6830 41 1 3.1876 0.8389 -2.2233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760786380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = 0.781279 kcal Electronic energy + Delta-G solvation = -27936.067380 eV Core-core repulsion = 23733.498698 eV Total energy + Delta-G solvation = -4202.568682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.24374 -41.29392 -39.99161 -38.56411 -36.35238 -34.34369 -34.02394 -32.55659 -32.40097 -29.61433 -29.33840 -28.16850 -26.53007 -25.51988 -24.29789 -22.45721 -21.72827 -21.12064 -20.57190 -19.40348 -18.33929 -17.89520 -17.04491 -16.60422 -16.32603 -15.48758 -15.25410 -15.21862 -14.96059 -14.82183 -14.44570 -14.28685 -14.05034 -13.66858 -13.55309 -13.48322 -13.22803 -12.94763 -12.92176 -12.64280 -12.37007 -12.17852 -11.98755 -11.66418 -11.61829 -11.45461 -11.31029 -10.94055 -10.70839 -10.52276 -10.46249 -9.77607 -9.60363 -9.39939 -9.18069 -8.96555 -8.36274 -7.87843 -7.11101 -6.60867 -4.18362 1.82150 1.89335 2.12864 2.50603 2.83225 3.02028 3.05621 3.08222 3.13280 3.67713 3.85561 4.34461 4.41824 4.75225 4.85889 4.90458 4.93746 4.96213 5.03292 5.12499 5.17561 5.26230 5.30667 5.48441 5.62532 5.74937 5.76191 5.82867 6.02640 6.05071 6.14751 6.25816 6.38826 6.56315 6.69359 6.77515 6.92311 6.95273 6.98075 7.08045 7.21149 7.65686 7.73382 7.83016 7.97599 8.62369 8.85499 9.46724 10.56092 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.003303 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.529911 B = 8475.588803 C =10357.800457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 H 0.100 0.900 4 C 0.513 3.487 5 O -0.528 6.528 6 N -0.650 5.650 7 C 0.060 3.940 8 C -0.050 4.050 9 C -0.230 4.230 10 C 0.129 3.871 11 F -0.152 7.152 12 C -0.259 4.259 13 C 0.159 3.841 14 O -0.167 6.167 15 C -0.392 4.392 16 H 0.094 0.906 17 C 0.044 3.956 18 N -0.858 5.858 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.210 4.210 24 C 0.084 3.916 25 N -0.304 5.304 26 N -0.383 5.383 27 C 0.105 3.895 28 C 0.057 3.943 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.271 0.729 37 H 0.179 0.821 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 1.991 -12.625 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.118 0.882 4 C 0.300 3.700 5 O -0.404 6.404 6 N -0.294 5.294 7 C -0.034 4.034 8 C -0.070 4.070 9 C -0.250 4.250 10 C 0.109 3.891 11 F -0.131 7.131 12 C -0.280 4.280 13 C 0.103 3.897 14 O -0.070 6.070 15 C -0.468 4.468 16 H 0.112 0.888 17 C -0.161 4.161 18 N -0.492 5.492 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.222 4.222 24 C -0.102 4.102 25 N -0.125 5.125 26 N -0.165 5.165 27 C -0.037 4.037 28 C -0.089 4.089 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.196 0.804 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.105 0.696 -14.002 16.193 hybrid contribution -0.799 0.877 1.818 2.171 sum 7.306 1.573 -12.184 14.293 Atomic orbital electron populations 1.21787 0.91842 1.03226 1.03040 1.19486 0.97428 0.99041 0.88993 0.88219 1.20648 0.80377 0.84739 0.84198 1.90657 1.37087 1.26261 1.86427 1.43162 1.55774 1.26742 1.03730 1.16878 0.94433 1.05150 0.86946 1.20642 0.93524 0.95517 0.97363 1.20487 1.01779 1.09231 0.93516 1.17468 0.94247 0.94283 0.83073 1.91412 1.91293 1.77865 1.52497 1.20861 0.98436 1.07177 1.01553 1.18837 0.86252 0.92413 0.92247 1.83927 1.24084 1.63276 1.35670 1.21395 1.04941 1.31285 0.89191 0.88831 1.25263 0.96440 0.95215 0.99217 1.70014 1.22068 1.28022 1.29105 0.85632 0.79291 0.78585 0.79921 1.18992 1.20039 1.20044 1.19464 1.08275 0.95442 0.98997 1.23648 0.97973 0.95681 0.92909 1.77363 1.13901 1.05649 1.15608 1.48354 1.40565 1.08482 1.19096 1.21779 0.94604 1.03231 0.84039 1.22202 0.99957 0.95678 0.91090 0.91977 0.90858 0.91646 0.74974 0.84169 0.86040 0.83998 0.91893 0.80388 0.91003 0.89523 0.89729 0.81125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.99 37.16 0.33 -1.42 16 2 C -0.03 -0.34 3.08 -92.92 -0.29 -0.63 16 3 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 4 C 0.51 8.45 6.95 -10.99 -0.08 8.37 16 5 O -0.53 -10.14 12.78 5.54 0.07 -10.07 16 6 N -0.65 -11.50 5.05 -9.72 -0.05 -11.55 16 7 C 0.06 1.23 6.33 -83.46 -0.53 0.70 16 8 C -0.05 -0.96 8.69 -39.43 -0.34 -1.30 16 9 C -0.23 -4.30 10.02 -39.48 -0.40 -4.70 16 10 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 11 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 12 C -0.26 -5.64 9.14 -39.36 -0.36 -6.00 16 13 C 0.16 3.60 6.66 -38.94 -0.26 3.34 16 14 O -0.17 -4.26 9.32 0.05 0.00 -4.26 16 15 C -0.39 -10.17 9.49 30.88 0.29 -9.88 16 16 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 17 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 18 N -0.86 -22.84 13.67 55.48 0.76 -22.08 16 19 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.21 -2.76 4.37 -105.06 -0.46 -3.22 16 24 C 0.08 1.24 10.76 -17.36 -0.19 1.05 16 25 N -0.30 -4.49 12.58 30.62 0.39 -4.11 16 26 N -0.38 -4.46 4.01 -68.16 -0.27 -4.73 16 27 C 0.11 0.71 11.47 59.84 0.69 1.40 16 28 C 0.06 0.62 11.38 -17.22 -0.20 0.43 16 29 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.41 6.95 8.14 -40.82 -0.33 6.62 16 33 H 0.14 2.62 6.20 -52.48 -0.33 2.29 16 34 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.14 3.09 5.64 -52.49 -0.30 2.80 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.18 2.56 8.06 -52.49 -0.42 2.13 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -31.87 359.70 -5.39 -37.26 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.56 Total: 11.10 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.16 Total: -8.53 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.82 Total: -42.47 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.07 Total: -14.32 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.87 -5.39 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760786380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.045 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds