Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47146 * 2 1 4 4 C 1.50700 * 109.46797 * 120.00123 * 2 1 3 5 5 O 1.21301 * 119.99692 * 119.99864 * 4 2 1 6 6 N 1.34775 * 120.00527 * 299.99536 * 4 2 1 7 7 C 1.40081 * 120.00320 * 175.91049 * 6 4 2 8 8 C 1.38709 * 120.07398 * 34.56705 * 7 6 4 9 9 C 1.38187 * 120.02009 * 179.69779 * 8 7 6 10 10 C 1.38555 * 120.17335 * 0.60049 * 9 8 7 11 11 F 1.35108 * 119.92282 * 179.70221 * 10 9 8 12 12 C 1.38337 * 120.15695 * 359.67514 * 10 9 8 13 13 C 1.38743 * 119.97346 * 0.02562 * 12 10 9 14 14 O 1.35775 * 120.08370 * 179.97438 * 13 12 10 15 15 C 1.34804 * 117.00500 * 5.44828 * 14 13 12 16 16 H 1.08004 * 119.99514 * 354.95413 * 15 14 13 17 17 C 1.38639 * 120.00593 * 174.94901 * 15 14 13 18 18 N 1.31574 * 119.99374 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00230 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47236 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47003 * 119.99990 * 19 17 15 22 22 H 1.48504 * 109.47181 * 240.00173 * 19 17 15 23 23 C 1.50699 * 109.47010 * 239.99980 * 2 1 3 24 24 C 1.39864 * 126.03929 * 299.69555 * 23 2 1 25 25 N 1.30845 * 108.20354 * 179.81593 * 24 23 2 26 26 N 1.40091 * 108.20107 * 0.43646 * 25 24 23 27 27 C 1.46496 * 126.03621 * 179.74126 * 26 25 24 28 28 C 1.34949 * 107.92458 * 359.71782 * 26 25 24 29 29 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46857 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47348 * 59.99452 * 1 2 3 32 32 H 0.97006 * 119.99289 * 355.64377 * 6 4 2 33 33 H 1.08004 * 119.99322 * 359.96861 * 8 7 6 34 34 H 1.08002 * 119.91575 * 180.29608 * 9 8 7 35 35 H 1.07998 * 120.01678 * 180.02562 * 12 10 9 36 36 H 0.96995 * 119.99639 * 180.02562 * 18 17 15 37 37 H 1.08001 * 125.90307 * 0.02562 * 24 23 2 38 38 H 1.09002 * 109.46710 * 269.97324 * 27 26 25 39 39 H 1.09003 * 109.47321 * 29.97143 * 27 26 25 40 40 H 1.08997 * 109.47266 * 149.97877 * 27 26 25 41 41 H 1.07998 * 126.12613 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6967 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1014 -0.9581 3.5971 8 6 3.3139 -1.6317 3.6130 9 6 3.7049 -2.3247 4.7428 10 6 2.8830 -2.3595 5.8577 11 9 3.2676 -3.0436 6.9575 12 6 1.6697 -1.6950 5.8477 13 6 1.2737 -0.9922 4.7190 14 8 0.0831 -0.3396 4.7065 15 6 -0.6156 -0.3188 5.8591 16 1 -0.2626 -0.8755 6.7147 17 6 -1.7873 0.4171 5.9464 18 7 -2.2176 1.0949 4.9040 19 14 -2.7551 0.4464 7.5439 20 1 -2.0637 -0.3908 8.5569 21 1 -2.8510 1.8432 8.0389 22 1 -4.1195 -0.0893 7.3060 23 6 2.0324 -0.7104 -1.2305 24 6 1.7784 -2.0425 -1.5728 25 7 2.3775 -2.2940 -2.7086 26 7 3.0409 -1.1308 -3.1203 27 6 3.8399 -0.9798 -4.3389 28 6 2.8135 -0.1738 -2.1964 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.2026 0.5738 2.5446 33 1 3.9545 -1.6111 2.7438 34 1 4.6515 -2.8447 4.7551 35 1 1.0310 -1.7233 6.7182 36 1 -3.0371 1.6101 4.9652 37 1 1.1869 -2.7418 -1.0005 38 1 4.8773 -1.2389 -4.1275 39 1 3.4507 -1.6414 -5.1129 40 1 3.7862 0.0530 -4.6830 41 1 3.1876 0.8389 -2.2233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760786380.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = -19.061380 kcal Electronic energy + Delta-G solvation = -27936.927822 eV Core-core repulsion = 23733.498698 eV Total energy + Delta-G solvation = -4203.429124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.83143 -42.27967 -41.46353 -40.13111 -38.01697 -35.55162 -35.31043 -34.28152 -33.45759 -31.10786 -30.52310 -29.64358 -27.38196 -27.30592 -25.47276 -24.00822 -23.26180 -22.12056 -21.72825 -20.59420 -20.12196 -19.48359 -18.39474 -18.03132 -17.37961 -17.00455 -16.83077 -16.55547 -16.22578 -16.14632 -15.92454 -15.52706 -15.40323 -15.20795 -15.05699 -14.84321 -14.69566 -14.01792 -13.89606 -13.73545 -13.56730 -13.41624 -13.33172 -13.11430 -13.00608 -12.64852 -12.47153 -12.43326 -12.31225 -12.11909 -11.61838 -11.44005 -11.09549 -10.81153 -10.63463 -10.27458 -9.54738 -9.29890 -8.74964 -8.48437 -6.14081 0.20100 0.47254 1.00176 1.39282 1.44281 1.54511 1.66086 1.74293 1.78507 2.15329 2.36398 2.68697 3.07569 3.18665 3.46211 3.62512 3.75348 3.96013 4.05321 4.15496 4.24317 4.26977 4.38582 4.39750 4.47550 4.49329 4.69215 4.73488 4.84722 4.88300 4.94940 5.03201 5.05771 5.18882 5.23857 5.33536 5.36936 5.37191 5.59410 5.68017 5.95884 6.05750 6.22092 6.58147 6.77164 6.96124 7.24972 7.64590 8.71699 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012692 B = 0.003303 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.529911 B = 8475.588803 C =10357.800457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.013 4.013 3 H 0.135 0.865 4 C 0.514 3.486 5 O -0.555 6.555 6 N -0.651 5.651 7 C 0.063 3.937 8 C -0.052 4.052 9 C -0.207 4.207 10 C 0.121 3.879 11 F -0.146 7.146 12 C -0.266 4.266 13 C 0.133 3.867 14 O -0.198 6.198 15 C -0.416 4.416 16 H 0.097 0.903 17 C -0.005 4.005 18 N -0.900 5.900 19 Si 1.009 2.991 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.234 4.234 24 C 0.063 3.937 25 N -0.340 5.340 26 N -0.381 5.381 27 C 0.094 3.906 28 C 0.075 3.925 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.275 0.725 37 H 0.164 0.836 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 3.002 -13.572 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 H 0.153 0.847 4 C 0.303 3.697 5 O -0.433 6.433 6 N -0.296 5.296 7 C -0.032 4.032 8 C -0.072 4.072 9 C -0.227 4.227 10 C 0.102 3.898 11 F -0.125 7.125 12 C -0.287 4.287 13 C 0.079 3.921 14 O -0.103 6.103 15 C -0.492 4.492 16 H 0.114 0.886 17 C -0.206 4.206 18 N -0.536 5.536 19 Si 0.829 3.171 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.246 4.246 24 C -0.123 4.123 25 N -0.163 5.163 26 N -0.163 5.163 27 C -0.046 4.046 28 C -0.073 4.073 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.254 0.746 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.181 0.819 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.775 1.684 -14.975 17.962 hybrid contribution -1.055 0.463 1.958 2.272 sum 8.720 2.147 -13.017 15.814 Atomic orbital electron populations 1.21738 0.91924 1.02189 1.03492 1.19457 0.97103 1.00208 0.86733 0.84682 1.21414 0.79366 0.84362 0.84586 1.90633 1.38399 1.27492 1.86759 1.43294 1.55897 1.26768 1.03605 1.17143 0.94290 1.04585 0.87163 1.20831 0.93138 0.95322 0.97915 1.20866 1.02269 1.07339 0.92239 1.17469 0.93968 0.94580 0.83828 1.91426 1.91117 1.77651 1.52262 1.20936 0.99188 1.07388 1.01207 1.19188 0.86321 0.93028 0.93559 1.83907 1.25430 1.65094 1.35831 1.21747 1.05733 1.32052 0.89689 0.88599 1.26303 0.97067 0.94616 1.02585 1.70111 1.22918 1.29392 1.31167 0.84655 0.77681 0.78930 0.75829 1.18308 1.19144 1.19511 1.19549 1.10056 0.95021 0.99995 1.23618 0.98620 0.96654 0.93363 1.77279 1.15203 1.07795 1.15985 1.48772 1.39779 1.07605 1.20146 1.22190 0.94342 1.05648 0.82372 1.22848 0.97853 0.97011 0.89558 0.93822 0.92142 0.89311 0.74586 0.83107 0.82782 0.84751 0.91586 0.81859 0.90005 0.89399 0.86118 0.76661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.99 71.98 0.65 -2.67 16 2 C -0.01 -0.31 3.08 -12.28 -0.04 -0.34 16 3 H 0.14 2.27 8.11 -2.39 -0.02 2.25 16 4 C 0.51 16.66 6.95 87.66 0.61 17.27 16 5 O -0.56 -21.11 12.78 -3.10 -0.04 -21.15 16 6 N -0.65 -23.14 5.05 -303.04 -1.53 -24.67 16 7 C 0.06 2.59 6.33 38.23 0.24 2.83 16 8 C -0.05 -1.92 8.69 22.37 0.19 -1.73 16 9 C -0.21 -7.33 10.02 22.33 0.22 -7.10 16 10 C 0.12 4.76 7.29 22.37 0.16 4.92 16 11 F -0.15 -5.42 17.26 44.97 0.78 -4.64 16 12 C -0.27 -11.76 9.14 22.41 0.20 -11.56 16 13 C 0.13 6.19 6.66 22.69 0.15 6.34 16 14 O -0.20 -10.51 9.32 -22.74 -0.21 -10.72 16 15 C -0.42 -22.35 9.49 67.92 0.64 -21.70 16 16 H 0.10 4.90 5.20 -2.91 -0.02 4.88 16 17 C -0.01 -0.28 5.49 84.83 0.47 0.18 16 18 N -0.90 -49.31 13.67 21.61 0.30 -49.02 16 19 Si 1.01 40.32 29.55 68.60 2.03 42.35 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.23 -5.80 4.37 -20.15 -0.09 -5.88 16 24 C 0.06 1.87 10.76 85.23 0.92 2.78 16 25 N -0.34 -9.94 12.58 -57.02 -0.72 -10.66 16 26 N -0.38 -7.96 4.01 -369.57 -1.48 -9.45 16 27 C 0.09 0.98 11.47 127.77 1.47 2.44 16 28 C 0.07 1.39 11.38 83.54 0.95 2.34 16 29 H 0.04 1.20 8.03 -2.39 -0.02 1.18 16 30 H 0.06 1.63 7.67 -2.39 -0.02 1.61 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.42 14.26 8.14 -92.70 -0.75 13.50 16 33 H 0.15 5.37 6.20 -2.91 -0.02 5.35 16 34 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 35 H 0.13 6.04 5.64 -2.91 -0.02 6.03 16 36 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 37 H 0.16 5.06 8.06 -2.91 -0.02 5.03 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -71.59 359.70 6.21 -65.37 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.34 Total: 34.46 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 6.75 Total: -11.88 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -3.43 Total: -93.79 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.25 Total: -31.87 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.78 Total: -4.64 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -71.59 6.21 -65.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760786380.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.314 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds