Wall clock time and date at job start Tue Mar 31 2020 17:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00563 * 2 1 4 4 N 1.46901 * 109.47143 * 124.99460 * 3 2 1 5 5 C 1.46902 * 111.00330 * 288.68666 * 4 3 2 6 6 C 1.50694 * 109.47115 * 160.09377 * 5 4 3 7 7 H 1.07998 * 120.00490 * 2.39175 * 6 5 4 8 8 C 1.37882 * 119.99827 * 182.39675 * 6 5 4 9 9 N 1.31514 * 119.99733 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47313 * 89.99332 * 10 8 6 12 12 H 1.48496 * 109.47338 * 209.99937 * 10 8 6 13 13 H 1.48503 * 109.46757 * 329.99664 * 10 8 6 14 14 C 1.46899 * 110.99932 * 164.73073 * 4 3 2 15 15 N 1.46503 * 109.47218 * 278.95866 * 14 4 3 16 16 N 1.40268 * 126.57193 * 285.28614 * 15 14 4 17 17 C 1.30163 * 107.74865 * 180.10696 * 16 15 14 18 18 C 1.47881 * 125.46819 * 179.91062 * 17 16 15 19 19 C 1.39544 * 120.11665 * 179.71753 * 18 17 16 20 20 C 1.37924 * 119.88529 * 179.97438 * 19 18 17 21 21 C 1.38580 * 120.11383 * 0.02562 * 20 19 18 22 22 F 1.35095 * 119.88537 * 179.97438 * 21 20 19 23 23 C 1.38590 * 120.23422 * 0.02562 * 21 20 19 24 24 C 1.37918 * 120.11076 * 359.97438 * 23 21 20 25 25 O 1.35082 * 109.06896 * 359.65116 * 17 16 15 26 26 C 1.34327 * 108.86504 * 0.22234 * 25 17 16 27 27 O 1.21688 * 126.26948 * 179.97438 * 26 25 17 28 28 H 1.07997 * 120.00139 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99444 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46616 * 5.00036 * 3 2 1 32 32 H 1.08994 * 109.47352 * 244.99787 * 3 2 1 33 33 H 1.09006 * 109.47026 * 280.09550 * 5 4 3 34 34 H 1.09001 * 109.46714 * 40.09159 * 5 4 3 35 35 H 0.97001 * 119.99327 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47422 * 158.95380 * 14 4 3 37 37 H 1.09009 * 109.46951 * 38.95511 * 14 4 3 38 38 H 1.08003 * 120.06147 * 359.96154 * 19 18 17 39 39 H 1.07996 * 119.94354 * 179.72613 * 20 19 18 40 40 H 1.07993 * 119.94667 * 179.97438 * 23 21 20 41 41 H 1.08005 * 120.05554 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 2.2746 1.4729 2.4063 6 6 3.1581 1.0166 3.5386 7 1 4.1692 0.6941 3.3385 8 6 2.6755 1.0107 4.8302 9 7 1.4444 1.4038 5.0740 10 14 3.7709 0.4457 6.2339 11 1 4.5141 1.6092 6.7810 12 1 2.9343 -0.1548 7.3038 13 1 4.7352 -0.5663 5.7328 14 6 3.9916 2.4001 0.9728 15 7 5.0559 1.9442 0.0752 16 7 6.0790 1.0362 0.3855 17 6 6.8203 0.8960 -0.6752 18 6 8.0129 0.0280 -0.7800 19 6 8.7247 -0.0423 -1.9782 20 6 9.8367 -0.8531 -2.0704 21 6 10.2470 -1.5976 -0.9760 22 9 11.3365 -2.3907 -1.0717 23 6 9.5431 -1.5323 0.2160 24 6 8.4298 -0.7247 0.3188 25 8 6.3222 1.6664 -1.6667 26 6 5.2368 2.3132 -1.2106 27 8 4.5440 3.0901 -1.8409 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 2.0028 2.5179 2.5558 34 1 1.3717 0.8627 2.3812 35 1 1.1051 1.3999 5.9827 36 1 4.4178 2.6499 1.9444 37 1 3.5118 3.2824 0.5488 38 1 8.4054 0.5370 -2.8319 39 1 10.3856 -0.9116 -2.9986 40 1 9.8667 -2.1148 1.0658 41 1 7.8822 -0.6741 1.2483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793569023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:13 Heat of formation + Delta-G solvation = 15.345615 kcal Electronic energy + Delta-G solvation = -27751.897397 eV Core-core repulsion = 23549.960272 eV Total energy + Delta-G solvation = -4201.937125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.29815 -43.25475 -39.38018 -38.01753 -37.34486 -35.59162 -33.29583 -32.82043 -32.06239 -31.62722 -29.88903 -27.47731 -26.56816 -24.56821 -23.72390 -23.56969 -22.33565 -21.70991 -20.82855 -19.29108 -18.35371 -17.77773 -17.62089 -16.85853 -16.71968 -16.45357 -15.97482 -15.95451 -15.47975 -15.25976 -14.71963 -14.54046 -14.29362 -13.99753 -13.71586 -13.57543 -13.54954 -13.20171 -12.88187 -12.60150 -12.31388 -12.05614 -11.93753 -11.71742 -11.63720 -11.40011 -11.21295 -10.80356 -10.76371 -10.69464 -10.59651 -10.09202 -9.63929 -9.57764 -9.36142 -8.92597 -8.52550 -8.46304 -7.65006 -6.10271 -4.12560 0.21521 0.81299 1.76433 1.87600 2.30927 2.50115 2.71491 3.23083 3.27600 3.34636 3.38842 3.80130 3.99560 4.35239 4.39299 4.43668 4.65451 4.78239 4.80164 4.94809 5.25316 5.30201 5.38487 5.43594 5.48282 5.55810 5.58742 5.67976 5.78949 5.82732 5.88200 5.95037 6.03164 6.15355 6.32021 6.36088 6.91563 7.02806 7.06037 7.20187 7.47725 7.60441 7.74256 7.85161 8.00070 8.33917 8.95803 9.52422 11.00000 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.003513 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.768394 B = 7967.591592 C = 9807.019695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C 0.078 3.922 4 N -0.542 5.542 5 C 0.199 3.801 6 C -0.511 4.511 7 H 0.067 0.933 8 C 0.058 3.942 9 N -0.897 5.897 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.318 3.682 15 N -0.428 5.428 16 N -0.214 5.214 17 C 0.254 3.746 18 C -0.031 4.031 19 C -0.051 4.051 20 C -0.156 4.156 21 C 0.120 3.880 22 F -0.135 7.135 23 C -0.153 4.153 24 C -0.037 4.037 25 O -0.274 6.274 26 C 0.602 3.398 27 O -0.492 6.492 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.064 0.936 33 H -0.004 1.004 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.119 -3.809 -12.653 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.143 4.143 3 C -0.050 4.050 4 N -0.267 5.267 5 C 0.075 3.925 6 C -0.550 4.550 7 H 0.086 0.914 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.197 1.197 14 C 0.109 3.891 15 N -0.261 5.261 16 N -0.043 5.043 17 C 0.031 3.969 18 C -0.033 4.033 19 C -0.071 4.071 20 C -0.175 4.175 21 C 0.100 3.900 22 F -0.113 7.113 23 C -0.172 4.172 24 C -0.057 4.057 25 O -0.171 6.171 26 C 0.354 3.646 27 O -0.375 6.375 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.014 0.986 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.647 -3.933 -12.104 18.661 hybrid contribution 0.159 0.448 0.122 0.490 sum 13.806 -3.485 -11.981 18.609 Atomic orbital electron populations 1.23711 0.95861 1.01373 1.02712 1.22752 0.95388 0.98344 0.97777 1.21267 0.94516 0.95008 0.94218 1.61722 1.15703 1.44958 1.04368 1.19794 0.94201 0.95970 0.82559 1.21167 0.99676 1.43633 0.90525 0.91440 1.24973 0.95111 0.95391 0.98891 1.69953 1.15214 1.47635 1.20778 0.86494 0.80355 0.78942 0.81633 1.20711 1.21310 1.19681 1.22115 0.83385 0.90450 0.93131 1.50710 1.25493 1.38638 1.11224 1.77602 0.98406 1.08235 1.20051 1.23638 0.96368 0.94604 0.82328 1.17271 0.91760 0.98233 0.96054 1.21108 0.92893 0.96389 0.96739 1.21050 0.98829 0.98741 0.98880 1.17949 0.85103 0.91840 0.95126 1.91529 1.51536 1.71548 1.96730 1.21120 0.96524 1.01981 0.97540 1.21150 0.94369 0.91835 0.98331 1.85082 1.40430 1.52060 1.39530 1.19407 0.80213 0.82340 0.82631 1.91185 1.47156 1.36307 1.62809 0.88730 0.88970 0.87364 0.94441 0.91797 0.98585 0.93668 0.92821 0.86066 0.90407 0.83688 0.83772 0.83487 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 14.32 29.01 0.42 -2.77 16 2 C -0.12 -2.19 8.72 -36.03 -0.31 -2.51 16 3 C 0.08 1.43 5.26 -4.98 -0.03 1.41 16 4 N -0.54 -11.14 4.47 -241.43 -1.08 -12.22 16 5 C 0.20 4.82 4.54 -4.98 -0.02 4.80 16 6 C -0.51 -13.51 8.53 -34.44 -0.29 -13.80 16 7 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 10 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 14 C 0.32 5.89 6.03 -63.31 -0.38 5.51 16 15 N -0.43 -7.50 3.75 -68.30 -0.26 -7.76 16 16 N -0.21 -3.50 12.16 31.96 0.39 -3.11 16 17 C 0.25 3.49 7.94 -14.31 -0.11 3.38 16 18 C -0.03 -0.32 5.87 -104.97 -0.62 -0.94 16 19 C -0.05 -0.42 9.71 -39.21 -0.38 -0.81 16 20 C -0.16 -1.14 10.01 -39.57 -0.40 -1.53 16 21 C 0.12 0.99 7.30 -39.33 -0.29 0.71 16 22 F -0.13 -1.20 17.26 2.25 0.04 -1.16 16 23 C -0.15 -1.24 10.01 -39.57 -0.40 -1.64 16 24 C -0.04 -0.35 9.68 -39.21 -0.38 -0.73 16 25 O -0.27 -4.10 10.43 -20.74 -0.22 -4.32 16 26 C 0.60 10.47 8.74 54.15 0.47 10.95 16 27 O -0.49 -9.52 17.73 -19.00 -0.34 -9.86 16 28 H 0.09 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.09 1.42 7.84 -52.49 -0.41 1.01 16 30 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 32 H 0.06 1.17 7.38 -51.93 -0.38 0.79 16 33 H 0.00 -0.09 8.00 -51.93 -0.42 -0.51 16 34 H 0.05 1.19 7.09 -51.93 -0.37 0.82 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 2.33 7.26 -51.93 -0.38 1.95 16 37 H 0.08 1.36 7.67 -51.92 -0.40 0.96 16 38 H 0.15 1.02 7.89 -52.48 -0.41 0.61 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.15 1.51 7.82 -52.48 -0.41 1.10 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -30.26 369.05 -7.82 -38.07 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.81 Total: 0.26 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -2.82 Total: 3.50 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.21 Total: -47.87 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.55 Total: -14.18 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.26 -7.82 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793569023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.417 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds