Wall clock time and date at job start Tue Mar 31 2020 17:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00563 * 2 1 4 4 N 1.46901 * 109.47143 * 124.99460 * 3 2 1 5 5 C 1.46902 * 111.00330 * 288.68666 * 4 3 2 6 6 C 1.50694 * 109.47115 * 160.09377 * 5 4 3 7 7 H 1.07998 * 120.00490 * 2.39175 * 6 5 4 8 8 C 1.37882 * 119.99827 * 182.39675 * 6 5 4 9 9 N 1.31514 * 119.99733 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47313 * 89.99332 * 10 8 6 12 12 H 1.48496 * 109.47338 * 209.99937 * 10 8 6 13 13 H 1.48503 * 109.46757 * 329.99664 * 10 8 6 14 14 C 1.46899 * 110.99932 * 164.73073 * 4 3 2 15 15 N 1.46503 * 109.47218 * 278.95866 * 14 4 3 16 16 N 1.40268 * 126.57193 * 285.28614 * 15 14 4 17 17 C 1.30163 * 107.74865 * 180.10696 * 16 15 14 18 18 C 1.47881 * 125.46819 * 179.91062 * 17 16 15 19 19 C 1.39544 * 120.11665 * 179.71753 * 18 17 16 20 20 C 1.37924 * 119.88529 * 179.97438 * 19 18 17 21 21 C 1.38580 * 120.11383 * 0.02562 * 20 19 18 22 22 F 1.35095 * 119.88537 * 179.97438 * 21 20 19 23 23 C 1.38590 * 120.23422 * 0.02562 * 21 20 19 24 24 C 1.37918 * 120.11076 * 359.97438 * 23 21 20 25 25 O 1.35082 * 109.06896 * 359.65116 * 17 16 15 26 26 C 1.34327 * 108.86504 * 0.22234 * 25 17 16 27 27 O 1.21688 * 126.26948 * 179.97438 * 26 25 17 28 28 H 1.07997 * 120.00139 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99444 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46616 * 5.00036 * 3 2 1 32 32 H 1.08994 * 109.47352 * 244.99787 * 3 2 1 33 33 H 1.09006 * 109.47026 * 280.09550 * 5 4 3 34 34 H 1.09001 * 109.46714 * 40.09159 * 5 4 3 35 35 H 0.97001 * 119.99327 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47422 * 158.95380 * 14 4 3 37 37 H 1.09009 * 109.46951 * 38.95511 * 14 4 3 38 38 H 1.08003 * 120.06147 * 359.96154 * 19 18 17 39 39 H 1.07996 * 119.94354 * 179.72613 * 20 19 18 40 40 H 1.07993 * 119.94667 * 179.97438 * 23 21 20 41 41 H 1.08005 * 120.05554 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3318 1.1346 5 6 2.2746 1.4729 2.4063 6 6 3.1581 1.0166 3.5386 7 1 4.1692 0.6941 3.3385 8 6 2.6755 1.0107 4.8302 9 7 1.4444 1.4038 5.0740 10 14 3.7709 0.4457 6.2339 11 1 4.5141 1.6092 6.7810 12 1 2.9343 -0.1548 7.3038 13 1 4.7352 -0.5663 5.7328 14 6 3.9916 2.4001 0.9728 15 7 5.0559 1.9442 0.0752 16 7 6.0790 1.0362 0.3855 17 6 6.8203 0.8960 -0.6752 18 6 8.0129 0.0280 -0.7800 19 6 8.7247 -0.0423 -1.9782 20 6 9.8367 -0.8531 -2.0704 21 6 10.2470 -1.5976 -0.9760 22 9 11.3365 -2.3907 -1.0717 23 6 9.5431 -1.5323 0.2160 24 6 8.4298 -0.7247 0.3188 25 8 6.3222 1.6664 -1.6667 26 6 5.2368 2.3132 -1.2106 27 8 4.5440 3.0901 -1.8409 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 2.0028 2.5179 2.5558 34 1 1.3717 0.8627 2.3812 35 1 1.1051 1.3999 5.9827 36 1 4.4178 2.6499 1.9444 37 1 3.5118 3.2824 0.5488 38 1 8.4054 0.5370 -2.8319 39 1 10.3856 -0.9116 -2.9986 40 1 9.8667 -2.1148 1.0658 41 1 7.8822 -0.6741 1.2483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793569023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:12 Heat of formation + Delta-G solvation = -3.399668 kcal Electronic energy + Delta-G solvation = -27752.710254 eV Core-core repulsion = 23549.960272 eV Total energy + Delta-G solvation = -4202.749981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.98307 -44.52994 -40.17908 -39.40503 -38.84396 -36.94018 -35.00718 -34.26957 -33.38340 -32.30300 -31.02903 -29.32043 -27.93153 -25.96152 -25.14715 -24.46128 -23.53282 -22.80942 -22.35537 -20.70794 -19.34689 -18.97047 -18.64712 -18.47532 -17.95676 -17.74590 -17.10076 -16.86979 -16.78763 -16.64695 -16.16555 -15.97574 -15.35871 -15.24977 -14.78506 -14.64342 -14.62927 -14.26864 -14.13440 -13.82791 -13.65442 -13.46197 -13.37720 -13.20206 -13.07511 -12.81984 -12.60369 -12.51817 -12.19451 -12.08502 -12.01412 -11.91982 -11.36531 -10.71077 -10.58631 -10.29128 -10.22260 -9.52903 -9.32516 -8.17297 -6.26340 -0.62374 0.17020 0.42207 0.85243 0.95664 1.33693 1.36805 1.44524 1.45705 1.56945 2.43115 2.50656 2.81851 3.12452 3.15410 3.23283 3.49389 3.70112 3.81540 3.95984 4.04318 4.11064 4.13704 4.15123 4.31291 4.36846 4.39376 4.61401 4.69797 4.77853 4.90252 4.96336 5.01660 5.08095 5.10328 5.18314 5.22666 5.63500 5.66796 5.70234 5.80875 6.00218 6.05619 6.22057 6.32551 6.47334 6.87840 7.42918 8.92935 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.003513 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.768394 B = 7967.591592 C = 9807.019695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.083 3.917 4 N -0.548 5.548 5 C 0.218 3.782 6 C -0.519 4.519 7 H 0.063 0.937 8 C 0.009 3.991 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.325 3.675 15 N -0.434 5.434 16 N -0.252 5.252 17 C 0.280 3.720 18 C -0.054 4.054 19 C -0.042 4.042 20 C -0.147 4.147 21 C 0.122 3.878 22 F -0.136 7.136 23 C -0.151 4.151 24 C -0.039 4.039 25 O -0.265 6.265 26 C 0.604 3.396 27 O -0.516 6.516 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.065 0.935 33 H -0.023 1.023 34 H 0.022 0.978 35 H 0.264 0.736 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.083 -5.012 -13.410 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.044 4.044 4 N -0.274 5.274 5 C 0.092 3.908 6 C -0.558 4.558 7 H 0.082 0.918 8 C -0.189 4.189 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.116 3.884 15 N -0.265 5.265 16 N -0.080 5.080 17 C 0.057 3.943 18 C -0.057 4.057 19 C -0.062 4.062 20 C -0.165 4.165 21 C 0.102 3.898 22 F -0.115 7.115 23 C -0.169 4.169 24 C -0.059 4.059 25 O -0.162 6.162 26 C 0.355 3.645 27 O -0.400 6.400 28 H 0.134 0.866 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.056 0.944 32 H 0.083 0.917 33 H -0.005 1.005 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.178 0.822 39 H 0.190 0.810 40 H 0.182 0.818 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.647 -5.148 -12.878 20.909 hybrid contribution -0.319 0.735 0.248 0.839 sum 15.328 -4.413 -12.630 20.346 Atomic orbital electron populations 1.23952 0.95362 1.02655 1.00009 1.22741 0.96078 0.97748 1.00261 1.21234 0.94203 0.95682 0.93261 1.61615 1.16070 1.46023 1.03645 1.19375 0.93350 0.94047 0.83997 1.21406 0.99677 1.43237 0.91433 0.91848 1.25772 0.96331 0.95445 1.01388 1.70066 1.16851 1.48828 1.21363 0.85482 0.78627 0.78708 0.78419 1.19902 1.21140 1.19014 1.21918 0.83202 0.90238 0.93050 1.50454 1.25710 1.39270 1.11100 1.77636 0.99263 1.09770 1.21315 1.24350 0.95930 0.92922 0.81053 1.17411 0.91499 0.99135 0.97648 1.21273 0.92576 0.96177 0.96152 1.21309 0.98166 0.97399 0.99636 1.18117 0.84788 0.91525 0.95405 1.91535 1.51611 1.71590 1.96735 1.21259 0.95790 1.01559 0.98314 1.21122 0.94812 0.92067 0.97866 1.85085 1.39612 1.51950 1.39544 1.19348 0.80483 0.82205 0.82416 1.91159 1.48175 1.37381 1.63320 0.86615 0.88466 0.87633 0.94447 0.91719 1.00490 0.95945 0.92740 0.87166 0.89602 0.82244 0.81004 0.81780 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.69 14.32 67.78 0.97 -4.72 16 2 C -0.15 -5.30 8.72 25.65 0.22 -5.08 16 3 C 0.08 3.14 5.26 85.56 0.45 3.59 16 4 N -0.55 -23.12 4.47 -917.74 -4.10 -27.22 16 5 C 0.22 10.88 4.54 85.55 0.39 11.27 16 6 C -0.52 -27.89 8.53 25.60 0.22 -27.67 16 7 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 10 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 13 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 14 C 0.32 12.41 6.03 170.81 1.03 13.44 16 15 N -0.43 -15.44 3.75 -600.25 -2.25 -17.69 16 16 N -0.25 -8.28 12.16 -167.03 -2.03 -10.31 16 17 C 0.28 7.52 7.94 87.50 0.69 8.22 16 18 C -0.05 -1.06 5.87 -20.09 -0.12 -1.18 16 19 C -0.04 -0.58 9.71 22.51 0.22 -0.36 16 20 C -0.15 -1.64 10.01 22.28 0.22 -1.42 16 21 C 0.12 1.66 7.30 22.44 0.16 1.83 16 22 F -0.14 -2.03 17.26 44.97 0.78 -1.26 16 23 C -0.15 -2.12 10.01 22.28 0.22 -1.89 16 24 C -0.04 -0.69 9.68 22.51 0.22 -0.47 16 25 O -0.27 -7.76 10.43 12.58 0.13 -7.63 16 26 C 0.60 21.05 8.74 129.76 1.13 22.18 16 27 O -0.52 -20.09 17.73 18.83 0.33 -19.76 16 28 H 0.12 3.10 8.06 -2.91 -0.02 3.07 16 29 H 0.10 2.92 7.84 -2.91 -0.02 2.90 16 30 H 0.11 3.76 8.06 -2.91 -0.02 3.73 16 31 H 0.04 1.39 7.71 -2.39 -0.02 1.37 16 32 H 0.06 2.40 7.38 -2.39 -0.02 2.39 16 33 H -0.02 -1.20 8.00 -2.38 -0.02 -1.22 16 34 H 0.02 1.22 7.09 -2.39 -0.02 1.20 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.11 4.41 7.26 -2.39 -0.02 4.39 16 37 H 0.09 3.10 7.67 -2.38 -0.02 3.08 16 38 H 0.16 1.76 7.89 -2.91 -0.02 1.74 16 39 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.15 2.82 7.82 -2.91 -0.02 2.80 16 Total: -1.00 -65.01 369.05 2.73 -62.28 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.06 Total: 11.48 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 6.50 Total: 18.69 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -8.10 Total: -108.64 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: 0.47 Total: -27.39 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -65.01 2.73 -62.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793569023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.885 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds