Wall clock time and date at job start Tue Mar 31 2020 17:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 120.00044 * 2 1 4 4 N 1.46497 * 109.46861 * 124.99543 * 3 2 1 5 5 C 1.34783 * 119.99950 * 180.02562 * 4 3 2 6 6 S 1.71203 * 119.99795 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00302 * 180.02562 * 5 4 3 8 8 N 1.40107 * 119.99873 * 359.97438 * 7 5 4 9 9 C 1.34773 * 119.99873 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08002 * 119.99905 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00648 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00158 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46791 * 5.00386 * 3 2 1 32 32 H 1.08992 * 109.47017 * 244.99674 * 3 2 1 33 33 H 0.97000 * 120.00520 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00039 * 179.97438 * 7 5 4 35 35 H 0.97001 * 120.00088 * 0.02562 * 8 7 5 36 36 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 37 37 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 38 38 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 39 39 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 40 40 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 41 41 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 42 42 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 3.7781 2.4091 1.3336 6 16 3.6872 3.7462 0.2683 7 7 4.6342 2.4336 2.3742 8 7 4.7083 1.3395 3.2463 9 6 5.5648 1.3638 4.2866 10 8 6.2711 2.3329 4.4681 11 6 5.6448 0.1867 5.2242 12 6 6.6857 0.4691 6.3095 13 1 6.4539 1.4155 6.7979 14 6 8.0545 0.5487 5.6840 15 1 8.2768 -0.0247 4.7963 16 6 9.0231 1.3537 6.2452 17 7 8.7969 1.9507 7.3950 18 14 10.6567 1.5963 5.3723 19 1 11.5182 2.5000 6.1764 20 1 11.3312 0.2833 5.2102 21 1 10.4192 2.1992 4.0361 22 6 6.6629 -0.6409 7.3285 23 6 7.0156 -1.9255 6.9593 24 6 6.9984 -2.9430 7.8948 25 6 6.6206 -2.6775 9.1978 26 6 6.2628 -1.3939 9.5658 27 6 6.2838 -0.3757 8.6311 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 3.0449 0.5745 1.7353 34 1 5.1991 3.2087 2.5194 35 1 4.1437 0.5642 3.1009 36 1 5.9340 -0.7036 4.6659 37 1 4.6718 0.0248 5.6880 38 1 7.9228 1.8871 7.8107 39 1 7.3071 -2.1337 5.9403 40 1 7.2776 -3.9459 7.6072 41 1 6.6046 -3.4730 9.9281 42 1 5.9673 -1.1866 10.5836 43 1 6.0047 0.6271 8.9187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798124565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:50 Heat of formation + Delta-G solvation = 60.160687 kcal Electronic energy + Delta-G solvation = -25375.276158 eV Core-core repulsion = 21741.495537 eV Total energy + Delta-G solvation = -3633.780621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36865 -38.93667 -38.31544 -36.30322 -34.49772 -33.72632 -32.04515 -31.25839 -30.25362 -29.03670 -26.70770 -25.42529 -23.67944 -22.85536 -21.85219 -21.49585 -20.80142 -19.96654 -19.02360 -18.29828 -17.01727 -16.62753 -16.16105 -16.02424 -15.78824 -15.52318 -15.12978 -14.65272 -14.30041 -14.18506 -13.79223 -13.71637 -13.59996 -13.17514 -12.77621 -12.57363 -12.50763 -12.10734 -11.73168 -11.70001 -11.37861 -11.26501 -10.82642 -10.79708 -10.59405 -10.32478 -10.15178 -10.09004 -9.87872 -9.73815 -8.88603 -8.81330 -8.44125 -8.28129 -7.81984 -7.81084 -7.73394 -6.39124 -4.09976 1.17247 1.25322 1.50764 2.04679 2.07178 2.15569 2.67485 2.87664 3.41803 3.47731 3.62573 4.17541 4.25350 4.46823 4.52947 4.57133 4.85335 5.09062 5.27460 5.32547 5.36199 5.46462 5.47727 5.57104 5.67130 5.72097 5.73586 5.96549 6.00211 6.04779 6.10317 6.14670 6.21474 6.37167 6.58225 6.63359 6.76876 6.97595 7.07620 7.08871 7.18950 7.26396 7.52323 7.70014 8.00296 8.32009 8.36062 8.80265 9.60162 11.00853 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003141 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.519311 B = 8911.219738 C =10771.875345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.187 4.187 3 C 0.154 3.846 4 N -0.686 5.686 5 C 0.564 3.436 6 S -0.625 6.625 7 N -0.461 5.461 8 N -0.567 5.567 9 C 0.518 3.482 10 O -0.475 6.475 11 C -0.105 4.105 12 C 0.073 3.927 13 H 0.054 0.946 14 C -0.579 4.579 15 H 0.047 0.953 16 C 0.035 3.965 17 N -0.899 5.899 18 Si 1.061 2.939 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.287 1.287 22 C -0.034 4.034 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.129 4.129 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.394 0.606 34 H 0.459 0.541 35 H 0.412 0.588 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.270 0.730 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.183 -9.965 -7.371 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.206 4.206 3 C 0.031 3.969 4 N -0.319 5.319 5 C 0.201 3.799 6 S -0.501 6.501 7 N -0.187 5.187 8 N -0.321 5.321 9 C 0.305 3.695 10 O -0.341 6.341 11 C -0.147 4.147 12 C 0.054 3.946 13 H 0.072 0.928 14 C -0.616 4.616 15 H 0.065 0.935 16 C -0.171 4.171 17 N -0.534 5.534 18 Si 0.890 3.110 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.214 1.214 22 C -0.035 4.035 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.147 4.147 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.231 0.769 34 H 0.309 0.691 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.235 -7.797 -7.687 17.177 hybrid contribution -1.320 -2.017 0.660 2.499 sum -14.555 -9.814 -7.027 18.909 Atomic orbital electron populations 1.24048 0.95679 1.02758 0.96749 1.23016 0.96387 0.97928 1.03222 1.20800 0.91314 0.96268 0.88518 1.44908 1.39287 1.16594 1.31132 1.22346 0.81246 0.90816 0.85523 1.93649 1.84016 1.26998 1.45447 1.44793 1.38854 1.14577 1.20525 1.46195 1.46101 1.13275 1.26561 1.21548 0.77806 0.90935 0.79206 1.90838 1.38800 1.33971 1.70527 1.21754 1.01614 0.94445 0.96916 1.17881 0.94483 0.92799 0.89439 0.92796 1.21529 0.96597 1.29868 1.13593 0.93455 1.25611 1.03486 0.92829 0.95186 1.70782 1.24707 1.43209 1.14676 0.83648 0.75384 0.76336 0.75620 1.20775 1.21641 1.21387 1.20720 0.92322 0.95166 0.95242 1.20909 0.99751 0.92633 0.99321 1.21024 1.01194 0.98666 0.93815 1.20858 1.03264 0.96516 0.96221 1.20983 1.01111 0.93406 0.98668 1.21067 1.01404 0.98493 0.93725 0.87622 0.87808 0.86551 0.88973 0.88541 0.76932 0.69057 0.74738 0.89302 0.90632 0.91804 0.86702 0.87355 0.87472 0.87341 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 14.32 29.02 0.42 -0.30 16 2 C -0.19 -0.98 9.63 -36.02 -0.35 -1.33 16 3 C 0.15 1.16 5.57 -5.19 -0.03 1.13 16 4 N -0.69 -5.83 5.51 -63.21 -0.35 -6.18 16 5 C 0.56 6.99 7.97 -86.92 -0.69 6.29 16 6 S -0.62 -10.14 29.32 -107.50 -3.15 -13.30 16 7 N -0.46 -6.08 6.26 29.96 0.19 -5.89 16 8 N -0.57 -6.81 6.26 31.22 0.20 -6.62 16 9 C 0.52 8.66 7.70 -10.99 -0.08 8.57 16 10 O -0.47 -10.46 14.85 5.55 0.08 -10.37 16 11 C -0.11 -1.68 4.94 -27.88 -0.14 -1.82 16 12 C 0.07 1.57 1.31 -92.92 -0.12 1.45 16 13 H 0.05 1.32 6.23 -51.93 -0.32 0.99 16 14 C -0.58 -14.53 6.40 -34.44 -0.22 -14.75 16 15 H 0.05 1.19 7.82 -52.49 -0.41 0.78 16 16 C 0.04 0.97 5.45 -17.82 -0.10 0.87 16 17 N -0.90 -26.15 13.63 55.43 0.76 -25.40 16 18 Si 1.06 25.22 29.91 -169.99 -5.08 20.13 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.03 -0.68 4.77 -104.62 -0.50 -1.17 16 23 C -0.11 -1.99 8.88 -39.59 -0.35 -2.34 16 24 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 25 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.12 -2.09 10.05 -39.59 -0.40 -2.48 16 27 C -0.13 -2.46 9.67 -39.59 -0.38 -2.85 16 28 H 0.11 0.36 8.06 -52.49 -0.42 -0.06 16 29 H 0.10 0.46 7.84 -52.49 -0.41 0.05 16 30 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 31 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 32 H 0.10 0.82 7.99 -51.93 -0.42 0.41 16 33 H 0.39 2.39 6.38 -40.82 -0.26 2.13 16 34 H 0.46 6.94 7.98 -182.59 -1.46 5.48 16 35 H 0.41 3.26 6.70 -182.59 -1.22 2.04 16 36 H 0.09 1.27 7.87 -51.93 -0.41 0.86 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.27 7.72 6.68 -40.82 -0.27 7.45 16 39 H 0.11 2.03 7.80 -52.48 -0.41 1.62 16 40 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.11 2.10 7.95 -52.49 -0.42 1.68 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -34.08 381.15 -13.10 -47.18 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.74 Total: 8.72 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -3.74 Total: -14.01 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.79 Total: -44.09 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.13 kcal Atomic # 16 Polarization: -10.14 SS G_CDS: -3.15 Total: -13.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.08 -13.10 -47.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798124565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.343 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds