Wall clock time and date at job start Tue Mar 31 2020 17:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 120.00044 * 2 1 4 4 N 1.46497 * 109.46861 * 124.99543 * 3 2 1 5 5 C 1.34783 * 119.99950 * 180.02562 * 4 3 2 6 6 S 1.71203 * 119.99795 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00302 * 180.02562 * 5 4 3 8 8 N 1.40107 * 119.99873 * 359.97438 * 7 5 4 9 9 C 1.34773 * 119.99873 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08002 * 119.99905 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00648 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00158 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46791 * 5.00386 * 3 2 1 32 32 H 1.08992 * 109.47017 * 244.99674 * 3 2 1 33 33 H 0.97000 * 120.00520 * 0.02562 * 4 3 2 34 34 H 0.97001 * 120.00039 * 179.97438 * 7 5 4 35 35 H 0.97001 * 120.00088 * 0.02562 * 8 7 5 36 36 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 37 37 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 38 38 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 39 39 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 40 40 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 41 41 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 42 42 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 3.7781 2.4091 1.3336 6 16 3.6872 3.7462 0.2683 7 7 4.6342 2.4336 2.3742 8 7 4.7083 1.3395 3.2463 9 6 5.5648 1.3638 4.2866 10 8 6.2711 2.3329 4.4681 11 6 5.6448 0.1867 5.2242 12 6 6.6857 0.4691 6.3095 13 1 6.4539 1.4155 6.7979 14 6 8.0545 0.5487 5.6840 15 1 8.2768 -0.0247 4.7963 16 6 9.0231 1.3537 6.2452 17 7 8.7969 1.9507 7.3950 18 14 10.6567 1.5963 5.3723 19 1 11.5182 2.5000 6.1764 20 1 11.3312 0.2833 5.2102 21 1 10.4192 2.1992 4.0361 22 6 6.6629 -0.6409 7.3285 23 6 7.0156 -1.9255 6.9593 24 6 6.9984 -2.9430 7.8948 25 6 6.6206 -2.6775 9.1978 26 6 6.2628 -1.3939 9.5658 27 6 6.2838 -0.3757 8.6311 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 3.0449 0.5745 1.7353 34 1 5.1991 3.2087 2.5194 35 1 4.1437 0.5642 3.1009 36 1 5.9340 -0.7036 4.6659 37 1 4.6718 0.0248 5.6880 38 1 7.9228 1.8871 7.8107 39 1 7.3071 -2.1337 5.9403 40 1 7.2776 -3.9459 7.6072 41 1 6.6046 -3.4730 9.9281 42 1 5.9673 -1.1866 10.5836 43 1 6.0047 0.6271 8.9187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798124565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:49 Heat of formation + Delta-G solvation = 39.231297 kcal Electronic energy + Delta-G solvation = -25376.183724 eV Core-core repulsion = 21741.495537 eV Total energy + Delta-G solvation = -3634.688188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59482 -40.22032 -39.54849 -37.25563 -36.11833 -34.54653 -33.49784 -32.63601 -31.59617 -30.35115 -27.51574 -27.00366 -25.15369 -24.12708 -23.20723 -22.63160 -21.74437 -21.20979 -19.97139 -19.47053 -18.73480 -17.88369 -17.28051 -17.06066 -16.94224 -16.57935 -16.23836 -15.87734 -15.68387 -15.62766 -15.13700 -15.07742 -14.68060 -14.24390 -14.07103 -13.99726 -13.56832 -13.55462 -13.18542 -12.80597 -12.62888 -12.58313 -12.11172 -12.09942 -11.97047 -11.82580 -11.74751 -11.51912 -11.20021 -10.66750 -10.56324 -10.39451 -9.87803 -9.63083 -9.28477 -9.08218 -9.02940 -8.45661 -6.14024 0.09220 0.10473 0.68875 0.73723 0.94499 1.07292 1.48636 1.54881 1.58271 1.72504 1.86470 2.59241 3.06981 3.11792 3.37407 3.72060 3.75998 4.10006 4.12579 4.23834 4.29148 4.40688 4.45677 4.51599 4.57585 4.61812 4.70009 4.82372 4.85851 4.93555 5.03860 5.13895 5.21282 5.38608 5.42161 5.57972 5.62681 5.74702 5.76391 5.82370 5.91777 5.98759 6.18064 6.22111 6.30515 6.39271 6.76822 7.10659 7.61816 8.94710 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003141 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.519311 B = 8911.219738 C =10771.875345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.192 4.192 3 C 0.152 3.848 4 N -0.659 5.659 5 C 0.584 3.416 6 S -0.698 6.698 7 N -0.467 5.467 8 N -0.539 5.539 9 C 0.522 3.478 10 O -0.537 6.537 11 C -0.099 4.099 12 C 0.073 3.927 13 H 0.012 0.988 14 C -0.563 4.563 15 H 0.046 0.954 16 C -0.020 4.020 17 N -0.941 5.941 18 Si 1.093 2.907 19 H -0.293 1.293 20 H -0.268 1.268 21 H -0.286 1.286 22 C -0.054 4.054 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.127 4.127 27 C -0.151 4.151 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.411 0.589 34 H 0.451 0.549 35 H 0.436 0.564 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.260 0.740 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.691 -14.117 -7.566 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.210 4.210 3 C 0.030 3.970 4 N -0.291 5.291 5 C 0.218 3.782 6 S -0.575 6.575 7 N -0.193 5.193 8 N -0.294 5.294 9 C 0.310 3.690 10 O -0.408 6.408 11 C -0.140 4.140 12 C 0.053 3.947 13 H 0.030 0.970 14 C -0.601 4.601 15 H 0.064 0.936 16 C -0.220 4.220 17 N -0.579 5.579 18 Si 0.919 3.081 19 H -0.219 1.219 20 H -0.193 1.193 21 H -0.213 1.213 22 C -0.055 4.055 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.145 4.145 27 C -0.170 4.170 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.251 0.749 34 H 0.299 0.701 35 H 0.281 0.719 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.824 -12.058 -7.929 20.689 hybrid contribution -1.029 -0.870 0.726 1.530 sum -15.853 -12.928 -7.202 21.687 Atomic orbital electron populations 1.24251 0.95544 1.03599 0.94989 1.22925 0.96457 0.96990 1.04660 1.20900 0.90874 0.97736 0.87498 1.44965 1.37471 1.15523 1.31115 1.21821 0.81263 0.90721 0.84356 1.93811 1.85782 1.30253 1.47639 1.44706 1.39051 1.14661 1.20850 1.45675 1.45171 1.13447 1.25124 1.21655 0.77387 0.90248 0.79724 1.90835 1.41673 1.36091 1.72212 1.21643 1.01934 0.94737 0.95731 1.17724 0.94145 0.91836 0.90991 0.96973 1.21843 0.97872 1.27774 1.12616 0.93608 1.26589 1.06386 0.93509 0.95498 1.70859 1.24500 1.46089 1.16463 0.83220 0.73223 0.77004 0.74642 1.21920 1.19279 1.21257 1.20527 0.94418 0.95495 0.95026 1.21031 1.00122 0.92386 1.00266 1.21413 0.99741 0.99612 0.93529 1.21307 1.01282 0.96806 0.96868 1.21288 1.00511 0.93412 0.99296 1.21130 1.02803 0.98723 0.94315 0.85857 0.87966 0.84909 0.89759 0.89430 0.74895 0.70069 0.71922 0.86673 0.86982 0.92918 0.86226 0.84030 0.83896 0.85045 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 14.32 67.79 0.97 0.05 16 2 C -0.19 -1.46 9.63 25.66 0.25 -1.21 16 3 C 0.15 2.05 5.57 85.64 0.48 2.53 16 4 N -0.66 -9.79 5.51 -353.90 -1.95 -11.74 16 5 C 0.58 14.02 7.97 179.05 1.43 15.44 16 6 S -0.70 -23.19 29.32 -56.49 -1.66 -24.84 16 7 N -0.47 -12.05 6.26 -59.11 -0.37 -12.42 16 8 N -0.54 -11.95 6.26 -173.54 -1.09 -13.03 16 9 C 0.52 17.09 7.70 87.66 0.68 17.76 16 10 O -0.54 -24.37 14.85 -3.04 -0.05 -24.42 16 11 C -0.10 -3.00 4.94 29.85 0.15 -2.85 16 12 C 0.07 3.14 1.31 -12.29 -0.02 3.12 16 13 H 0.01 0.62 6.23 -2.39 -0.01 0.61 16 14 C -0.56 -28.61 6.40 25.60 0.16 -28.45 16 15 H 0.05 2.28 7.82 -2.91 -0.02 2.25 16 16 C -0.02 -1.14 5.45 84.65 0.46 -0.68 16 17 N -0.94 -57.27 13.63 21.45 0.29 -56.97 16 18 Si 1.09 51.90 29.91 68.60 2.05 53.96 16 19 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 C -0.05 -2.13 4.77 -19.87 -0.09 -2.23 16 23 C -0.12 -4.13 8.88 22.27 0.20 -3.94 16 24 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 25 C -0.14 -4.04 10.05 22.27 0.22 -3.82 16 26 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 27 C -0.15 -5.81 9.67 22.27 0.22 -5.59 16 28 H 0.12 0.40 8.06 -2.91 -0.02 0.38 16 29 H 0.10 0.69 7.84 -2.91 -0.02 0.67 16 30 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 31 H 0.08 1.34 7.64 -2.38 -0.02 1.32 16 32 H 0.09 1.41 7.99 -2.39 -0.02 1.40 16 33 H 0.41 3.54 6.38 -92.71 -0.59 2.95 16 34 H 0.45 13.98 7.98 -213.31 -1.70 12.28 16 35 H 0.44 5.35 6.70 -213.31 -1.43 3.92 16 36 H 0.12 2.91 7.87 -2.39 -0.02 2.89 16 37 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 38 H 0.26 15.79 6.68 -92.71 -0.62 15.17 16 39 H 0.12 3.91 7.80 -2.91 -0.02 3.89 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 42 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.10 3.84 7.95 -2.91 -0.02 3.81 16 Total: -1.00 -79.67 381.15 0.26 -79.41 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -2.52 Total: 27.12 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.54 Total: -17.05 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.11 Total: -94.17 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.96 kcal Atomic # 16 Polarization: -23.19 SS G_CDS: -1.66 Total: -24.84 kcal Total: -79.67 0.26 -79.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798124565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.646 kcal (2) G-P(sol) polarization free energy of solvation -79.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds