Wall clock time and date at job start Tue Mar 31 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47168 * 2 1 4 4 N 1.46502 * 109.47093 * 119.99531 * 2 1 3 5 5 C 1.34772 * 120.00082 * 275.00200 * 4 2 1 6 6 O 1.21285 * 120.00262 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00063 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46915 * 320.00067 * 7 5 4 9 9 N 1.46903 * 109.47090 * 200.00180 * 7 5 4 10 10 C 1.52994 * 109.46992 * 80.00043 * 7 5 4 11 11 C 1.53004 * 109.46984 * 185.00173 * 10 7 5 12 12 C 1.50705 * 109.47002 * 179.97438 * 11 10 7 13 13 H 1.07999 * 120.00219 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99873 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99942 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47257 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46769 * 120.00388 * 16 14 12 19 19 H 1.48493 * 109.46985 * 240.00009 * 16 14 12 20 20 C 1.50702 * 109.47376 * 239.99676 * 2 1 3 21 21 N 1.27934 * 124.23319 * 284.97939 * 20 2 1 22 22 C 1.34664 * 117.84129 * 180.02562 * 21 20 2 23 23 C 1.40972 * 129.68957 * 180.02562 * 22 21 20 24 24 C 1.36178 * 120.42400 * 180.25379 * 23 22 21 25 25 C 1.38791 * 120.77909 * 359.52323 * 24 23 22 26 26 C 1.37651 * 120.06518 * 0.45347 * 25 24 23 27 27 C 1.39336 * 119.95501 * 359.78878 * 26 25 24 28 28 S 1.70646 * 124.23862 * 105.00196 * 20 2 1 29 29 H 1.09003 * 109.46774 * 60.00079 * 1 2 3 30 30 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47233 * 300.00888 * 1 2 3 32 32 H 0.97001 * 120.00045 * 95.00081 * 4 2 1 33 33 H 1.00904 * 110.99983 * 299.99542 * 9 7 5 34 34 H 1.00897 * 111.00384 * 63.95250 * 9 7 5 35 35 H 1.09002 * 109.47495 * 304.99721 * 10 7 5 36 36 H 1.09002 * 109.47444 * 64.99994 * 10 7 5 37 37 H 1.09003 * 109.46983 * 299.99659 * 11 10 7 38 38 H 1.08999 * 109.47600 * 59.99931 * 11 10 7 39 39 H 0.96997 * 119.99937 * 180.02562 * 15 14 12 40 40 H 1.08002 * 119.78422 * 359.96831 * 23 22 21 41 41 H 1.07999 * 119.60757 * 179.74344 * 24 23 22 42 42 H 1.08003 * 119.96771 * 180.24460 * 25 24 23 43 43 H 1.08005 * 120.01975 * 179.76767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 1 2.2138 -1.7270 3.6337 9 7 2.2601 0.0303 4.7841 10 6 4.1735 -0.8389 3.5269 11 6 4.6726 -1.6680 4.7121 12 6 6.1745 -1.7772 4.6517 13 1 6.7187 -1.3024 3.8487 14 6 6.8540 -2.4823 5.6224 15 7 6.1914 -3.0601 6.6006 16 14 8.7155 -2.6183 5.5472 17 1 9.2177 -1.8858 4.3570 18 1 9.3049 -2.0284 6.7759 19 1 9.1038 -4.0482 5.4492 20 6 2.0324 -0.7105 -1.2304 21 7 2.0146 -1.9802 -1.3860 22 6 2.4977 -2.4793 -2.5397 23 6 2.5977 -3.8181 -2.9695 24 6 3.1297 -4.1134 -4.1878 25 6 3.5738 -3.1053 -5.0321 26 6 3.4882 -1.7889 -4.6389 27 6 2.9513 -1.4682 -3.3938 28 16 2.6968 0.0778 -2.5903 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.2490 -1.6317 1.1528 33 1 2.6513 0.9603 4.7653 34 1 1.2564 0.0622 4.8818 35 1 4.4659 -1.3240 2.5956 36 1 4.6121 0.1580 3.5706 37 1 4.3804 -1.1829 5.6435 38 1 4.2342 -2.6649 4.6685 39 1 6.6695 -3.5558 7.2836 40 1 2.2543 -4.6151 -2.3265 41 1 3.2037 -5.1440 -4.5021 42 1 3.9899 -3.3541 -5.9972 43 1 3.8375 -1.0052 -5.2950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818110108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:48 Heat of formation + Delta-G solvation = 6.211183 kcal Electronic energy + Delta-G solvation = -25194.356580 eV Core-core repulsion = 21558.236533 eV Total energy + Delta-G solvation = -3636.120047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82221 -39.87693 -37.68396 -35.57172 -34.96069 -32.78746 -31.49595 -31.36293 -30.07264 -29.50110 -26.46462 -25.73090 -24.11739 -23.38457 -22.58192 -21.02856 -20.27743 -19.92161 -18.86454 -17.38273 -17.17370 -16.26535 -16.17666 -15.69994 -15.48713 -15.30798 -15.26089 -14.47394 -14.46299 -14.25399 -14.11642 -13.99226 -13.40800 -13.12005 -12.85432 -12.50620 -12.33470 -12.29673 -12.00780 -11.99373 -11.72467 -11.51326 -11.23174 -10.90122 -10.67426 -10.52056 -10.49137 -10.17836 -10.02925 -9.78554 -9.37323 -9.21479 -9.00529 -8.96890 -8.48077 -8.34823 -8.19943 -5.92445 -3.94333 0.02077 0.77363 0.84146 1.35233 1.95500 2.71734 3.22288 3.34473 3.34827 3.41151 3.42276 3.46414 4.17994 4.41150 4.51373 4.57828 4.78507 4.84220 4.85877 4.91794 4.95939 5.11757 5.16560 5.39337 5.43169 5.49345 5.54499 5.59218 5.74028 5.81029 5.84103 5.92974 5.99842 6.28929 6.33886 6.45988 6.66203 7.10202 7.24691 7.36584 7.57590 7.78095 7.80832 7.97893 8.14543 8.25426 8.50116 9.13758 9.68725 11.18516 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.003018 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.347559 B = 9274.232373 C =11218.630028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H 0.108 0.892 4 N -0.718 5.718 5 C 0.488 3.512 6 O -0.553 6.553 7 C 0.080 3.920 8 H 0.099 0.901 9 N -0.806 5.806 10 C -0.095 4.095 11 C 0.031 3.969 12 C -0.521 4.521 13 H 0.052 0.948 14 C 0.057 3.943 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.082 3.918 21 N -0.455 5.455 22 C 0.084 3.916 23 C -0.060 4.060 24 C -0.107 4.107 25 C -0.101 4.101 26 C -0.072 4.072 27 C -0.184 4.184 28 S 0.119 5.881 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.411 0.589 33 H 0.348 0.652 34 H 0.334 0.666 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.676 2.110 -24.587 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.126 0.874 4 N -0.372 5.372 5 C 0.273 3.727 6 O -0.430 6.430 7 C -0.036 4.036 8 H 0.117 0.883 9 N -0.333 5.333 10 C -0.134 4.134 11 C -0.006 4.006 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.203 4.203 21 N -0.168 5.168 22 C -0.036 4.036 23 C -0.081 4.081 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.095 4.095 27 C -0.303 4.303 28 S 0.376 5.624 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.502 3.059 -23.708 26.528 hybrid contribution 0.762 -0.856 -1.041 1.548 sum -10.740 2.203 -24.749 27.069 Atomic orbital electron populations 1.22158 0.92707 1.03401 1.03178 1.19471 0.94956 0.95567 0.79116 0.87446 1.46209 1.67726 1.14856 1.08444 1.22870 0.75961 0.87999 0.85821 1.90643 1.50814 1.16241 1.85314 1.21845 0.99924 0.97533 0.84266 0.88264 1.58998 1.15303 1.22292 1.36733 1.21662 0.88247 1.01616 1.01841 1.19020 0.94797 0.94140 0.92622 1.21318 0.92540 1.32424 1.09684 0.92973 1.24991 0.98079 0.95759 0.95521 1.69985 1.35163 1.34759 1.13257 0.86601 0.86231 0.77650 0.77892 1.19879 1.21037 1.21104 1.26804 1.00253 0.92389 1.00854 1.66047 1.17836 1.11855 1.21075 1.19171 1.00615 0.95094 0.88763 1.20459 0.98250 0.92987 0.96366 1.20770 0.98309 1.00128 0.93638 1.21169 0.99169 0.91886 1.00040 1.20354 0.98748 0.97282 0.93127 1.23934 1.08556 0.96384 1.01400 1.84009 1.60755 1.06861 1.10758 0.91422 0.91327 0.90588 0.75246 0.83797 0.85407 0.92908 0.92804 0.94617 0.96849 0.93168 0.84519 0.84617 0.84672 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.47 37.16 0.35 -1.22 16 2 C 0.22 2.58 3.06 -69.08 -0.21 2.36 16 3 H 0.11 1.32 7.57 -51.93 -0.39 0.92 16 4 N -0.72 -9.61 5.07 -54.93 -0.28 -9.89 16 5 C 0.49 7.62 7.03 -10.98 -0.08 7.54 16 6 O -0.55 -9.72 15.91 5.55 0.09 -9.63 16 7 C 0.08 1.36 3.15 -68.86 -0.22 1.14 16 8 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 9 N -0.81 -13.51 8.44 -5.65 -0.05 -13.56 16 10 C -0.10 -1.96 4.78 -26.73 -0.13 -2.08 16 11 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 12 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.08 0.97 6.13 -13.90 -0.09 0.88 16 21 N -0.45 -5.77 10.13 -9.08 -0.09 -5.87 16 22 C 0.08 0.99 7.00 -84.96 -0.59 0.40 16 23 C -0.06 -0.57 10.05 -39.29 -0.39 -0.97 16 24 C -0.11 -0.78 9.94 -40.12 -0.40 -1.18 16 25 C -0.10 -0.69 10.04 -39.59 -0.40 -1.09 16 26 C -0.07 -0.60 10.07 -39.39 -0.40 -1.00 16 27 C -0.18 -1.97 6.56 -38.55 -0.25 -2.22 16 28 S 0.12 1.21 23.10 -107.50 -2.48 -1.27 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.41 5.39 8.26 -40.82 -0.34 5.05 16 33 H 0.35 5.89 8.58 -39.29 -0.34 5.55 16 34 H 0.33 4.83 9.06 -39.29 -0.36 4.47 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 43 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -33.56 380.00 -10.74 -44.29 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.02 Total: 10.05 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.35 Total: -10.42 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.32 Total: -55.70 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.48 Total: -1.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.56 -10.74 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.504 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds