Wall clock time and date at job start Tue Mar 31 2020 18:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47168 * 2 1 4 4 N 1.46502 * 109.47093 * 119.99531 * 2 1 3 5 5 C 1.34772 * 120.00082 * 275.00200 * 4 2 1 6 6 O 1.21285 * 120.00262 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00063 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46915 * 320.00067 * 7 5 4 9 9 N 1.46903 * 109.47090 * 200.00180 * 7 5 4 10 10 C 1.52994 * 109.46992 * 80.00043 * 7 5 4 11 11 C 1.53004 * 109.46984 * 185.00173 * 10 7 5 12 12 C 1.50705 * 109.47002 * 179.97438 * 11 10 7 13 13 H 1.07999 * 120.00219 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99951 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99873 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99942 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47257 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46769 * 120.00388 * 16 14 12 19 19 H 1.48493 * 109.46985 * 240.00009 * 16 14 12 20 20 C 1.50702 * 109.47376 * 239.99676 * 2 1 3 21 21 N 1.27934 * 124.23319 * 284.97939 * 20 2 1 22 22 C 1.34664 * 117.84129 * 180.02562 * 21 20 2 23 23 C 1.40972 * 129.68957 * 180.02562 * 22 21 20 24 24 C 1.36178 * 120.42400 * 180.25379 * 23 22 21 25 25 C 1.38791 * 120.77909 * 359.52323 * 24 23 22 26 26 C 1.37651 * 120.06518 * 0.45347 * 25 24 23 27 27 C 1.39336 * 119.95501 * 359.78878 * 26 25 24 28 28 S 1.70646 * 124.23862 * 105.00196 * 20 2 1 29 29 H 1.09003 * 109.46774 * 60.00079 * 1 2 3 30 30 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47233 * 300.00888 * 1 2 3 32 32 H 0.97001 * 120.00045 * 95.00081 * 4 2 1 33 33 H 1.00904 * 110.99983 * 299.99542 * 9 7 5 34 34 H 1.00897 * 111.00384 * 63.95250 * 9 7 5 35 35 H 1.09002 * 109.47495 * 304.99721 * 10 7 5 36 36 H 1.09002 * 109.47444 * 64.99994 * 10 7 5 37 37 H 1.09003 * 109.46983 * 299.99659 * 11 10 7 38 38 H 1.08999 * 109.47600 * 59.99931 * 11 10 7 39 39 H 0.96997 * 119.99937 * 180.02562 * 15 14 12 40 40 H 1.08002 * 119.78422 * 359.96831 * 23 22 21 41 41 H 1.07999 * 119.60757 * 179.74344 * 24 23 22 42 42 H 1.08003 * 119.96771 * 180.24460 * 25 24 23 43 43 H 1.08005 * 120.01975 * 179.76767 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 1 2.2138 -1.7270 3.6337 9 7 2.2601 0.0303 4.7841 10 6 4.1735 -0.8389 3.5269 11 6 4.6726 -1.6680 4.7121 12 6 6.1745 -1.7772 4.6517 13 1 6.7187 -1.3024 3.8487 14 6 6.8540 -2.4823 5.6224 15 7 6.1914 -3.0601 6.6006 16 14 8.7155 -2.6183 5.5472 17 1 9.2177 -1.8858 4.3570 18 1 9.3049 -2.0284 6.7759 19 1 9.1038 -4.0482 5.4492 20 6 2.0324 -0.7105 -1.2304 21 7 2.0146 -1.9802 -1.3860 22 6 2.4977 -2.4793 -2.5397 23 6 2.5977 -3.8181 -2.9695 24 6 3.1297 -4.1134 -4.1878 25 6 3.5738 -3.1053 -5.0321 26 6 3.4882 -1.7889 -4.6389 27 6 2.9513 -1.4682 -3.3938 28 16 2.6968 0.0778 -2.5903 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 2.2490 -1.6317 1.1528 33 1 2.6513 0.9603 4.7653 34 1 1.2564 0.0622 4.8818 35 1 4.4659 -1.3240 2.5956 36 1 4.6121 0.1580 3.5706 37 1 4.3804 -1.1829 5.6435 38 1 4.2342 -2.6649 4.6685 39 1 6.6695 -3.5558 7.2836 40 1 2.2543 -4.6151 -2.3265 41 1 3.2037 -5.1440 -4.5021 42 1 3.9899 -3.3541 -5.9972 43 1 3.8375 -1.0052 -5.2950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818110108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:47 Heat of formation + Delta-G solvation = -17.184652 kcal Electronic energy + Delta-G solvation = -25195.371100 eV Core-core repulsion = 21558.236533 eV Total energy + Delta-G solvation = -3637.134567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64944 -41.03368 -38.50469 -36.92689 -36.19948 -34.82622 -32.37602 -32.12296 -31.92918 -30.24580 -28.14756 -26.65328 -25.57617 -24.35332 -23.36624 -22.54003 -21.43972 -21.18612 -19.68133 -18.74848 -18.12057 -18.06089 -17.24505 -16.84488 -16.55281 -16.37629 -16.19566 -16.06390 -15.61503 -15.41368 -15.04356 -14.88278 -14.77096 -14.31219 -14.07943 -13.82525 -13.52077 -13.43864 -13.29499 -12.90212 -12.83446 -12.72782 -12.60684 -12.52254 -12.25850 -11.90937 -11.79449 -11.68035 -11.27553 -11.20565 -11.02040 -10.89213 -10.50559 -10.31297 -9.76755 -9.60801 -9.18179 -8.15003 -6.25288 -0.72879 0.07644 0.13157 0.56841 1.20648 1.39984 1.40796 1.44210 1.53693 2.11110 2.43568 2.58654 2.66879 3.17848 3.42773 3.54645 3.69172 3.80856 3.95848 4.02050 4.06465 4.10409 4.26621 4.29404 4.31426 4.51666 4.63539 4.70525 4.75006 4.88290 4.91561 5.03880 5.11710 5.22001 5.23050 5.25008 5.39787 5.55809 5.74081 5.82835 5.97362 6.07301 6.29285 6.34692 6.44854 6.53556 6.93120 7.01789 7.42711 8.96454 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.003018 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.347559 B = 9274.232373 C =11218.630028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.218 3.782 3 H 0.103 0.897 4 N -0.709 5.709 5 C 0.496 3.504 6 O -0.571 6.571 7 C 0.087 3.913 8 H 0.108 0.892 9 N -0.816 5.816 10 C -0.081 4.081 11 C 0.040 3.960 12 C -0.544 4.544 13 H 0.054 0.946 14 C 0.002 3.998 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.277 1.277 20 C 0.064 3.936 21 N -0.472 5.472 22 C 0.049 3.951 23 C -0.079 4.079 24 C -0.101 4.101 25 C -0.090 4.090 26 C -0.083 4.083 27 C -0.200 4.200 28 S 0.136 5.864 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.347 0.653 34 H 0.348 0.652 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.009 0.991 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.140 0.860 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 1.663 -27.234 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.109 3.891 3 H 0.121 0.879 4 N -0.362 5.362 5 C 0.282 3.718 6 O -0.450 6.450 7 C -0.029 4.029 8 H 0.126 0.874 9 N -0.345 5.345 10 C -0.120 4.120 11 C 0.003 3.997 12 C -0.582 4.582 13 H 0.072 0.928 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.221 4.221 21 N -0.186 5.186 22 C -0.071 4.071 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.106 4.106 27 C -0.319 4.319 28 S 0.393 5.607 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.157 0.843 41 H 0.184 0.816 42 H 0.189 0.811 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.695 2.606 -26.381 28.585 hybrid contribution 0.507 -0.803 -0.332 1.006 sum -10.188 1.803 -26.713 28.646 Atomic orbital electron populations 1.22088 0.91421 1.03401 1.03719 1.19561 0.95944 0.95067 0.78512 0.87867 1.46126 1.66750 1.14870 1.08455 1.22371 0.76049 0.87477 0.85925 1.90638 1.51935 1.16856 1.85578 1.21604 0.97509 0.98371 0.85371 0.87443 1.58961 1.16520 1.22207 1.36820 1.21376 0.90833 1.00027 0.99729 1.18821 0.93779 0.93509 0.93585 1.21750 0.94097 1.32509 1.09865 0.92817 1.25903 1.03367 0.95282 0.95054 1.70111 1.37318 1.35448 1.14019 0.85482 0.79858 0.77982 0.78213 1.18947 1.20445 1.20251 1.26688 1.01414 0.92578 1.01399 1.66013 1.18207 1.12354 1.22045 1.19519 1.02178 0.96334 0.89062 1.20729 0.99233 0.92341 0.97657 1.21198 0.96512 1.01937 0.92514 1.21661 0.97336 0.91017 1.01084 1.20767 0.98472 0.98787 0.92532 1.24217 1.09164 0.96117 1.02361 1.83796 1.60393 1.06674 1.09855 0.89553 0.91544 0.91303 0.75043 0.83930 0.83839 0.92259 0.93570 0.97279 0.98938 0.92886 0.84262 0.81577 0.81075 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.47 71.98 0.68 -2.24 16 2 C 0.22 5.12 3.06 44.25 0.14 5.26 16 3 H 0.10 2.52 7.57 -2.39 -0.02 2.51 16 4 N -0.71 -18.98 5.07 -446.09 -2.26 -21.24 16 5 C 0.50 15.49 7.03 87.66 0.62 16.11 16 6 O -0.57 -19.98 15.91 -3.04 -0.05 -20.03 16 7 C 0.09 2.98 3.15 44.17 0.14 3.12 16 8 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 9 N -0.82 -27.67 8.44 -171.80 -1.45 -29.12 16 10 C -0.08 -3.39 4.78 30.59 0.15 -3.24 16 11 C 0.04 2.14 4.86 29.85 0.15 2.28 16 12 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 13 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 14 C 0.00 0.10 5.46 84.65 0.46 0.57 16 15 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 16 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 C 0.06 1.50 6.13 88.68 0.54 2.05 16 21 N -0.47 -12.07 10.13 -182.51 -1.85 -13.92 16 22 C 0.05 1.14 7.00 39.78 0.28 1.41 16 23 C -0.08 -1.43 10.05 22.46 0.23 -1.21 16 24 C -0.10 -1.20 9.94 21.92 0.22 -0.98 16 25 C -0.09 -0.92 10.04 22.26 0.22 -0.70 16 26 C -0.08 -1.18 10.07 22.40 0.23 -0.95 16 27 C -0.20 -4.08 6.56 22.94 0.15 -3.93 16 28 S 0.14 2.70 23.10 -56.49 -1.30 1.40 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.41 10.89 8.26 -92.71 -0.77 10.13 16 33 H 0.35 11.89 8.58 -89.69 -0.77 11.12 16 34 H 0.35 10.03 9.06 -89.70 -0.81 9.22 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.01 0.51 7.75 -2.39 -0.02 0.49 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -73.00 380.00 -1.46 -74.46 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -1.29 Total: 32.08 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.42 Total: -13.78 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.28 Total: -121.27 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.30 Total: 1.40 kcal Total: -73.00 -1.46 -74.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.279 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds