Wall clock time and date at job start Tue Mar 31 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47111 * 2 1 4 4 N 1.46499 * 109.46740 * 119.99995 * 2 1 3 5 5 C 1.34772 * 119.99919 * 274.99324 * 4 2 1 6 6 O 1.21279 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99926 * 180.02562 * 5 4 2 8 8 H 1.08990 * 109.46905 * 40.00676 * 7 5 4 9 9 N 1.46898 * 109.47045 * 160.00562 * 7 5 4 10 10 C 1.52996 * 109.47058 * 280.00535 * 7 5 4 11 11 C 1.52998 * 109.46929 * 175.00132 * 10 7 5 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 7 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 C 1.50699 * 109.46913 * 239.99861 * 2 1 3 21 21 N 1.27928 * 124.23934 * 284.69821 * 20 2 1 22 22 C 1.34669 * 117.84770 * 179.77176 * 21 20 2 23 23 C 1.40961 * 129.68939 * 180.18645 * 22 21 20 24 24 C 1.36183 * 120.42236 * 180.31299 * 23 22 21 25 25 C 1.38783 * 120.78206 * 0.02562 * 24 23 22 26 26 C 1.37658 * 120.06596 * 359.97438 * 25 24 23 27 27 C 1.39341 * 119.95214 * 0.02562 * 26 25 24 28 28 S 1.70648 * 124.23749 * 104.99899 * 20 2 1 29 29 H 1.09002 * 109.46504 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46939 * 300.00042 * 1 2 3 31 31 H 1.09003 * 109.47015 * 60.00274 * 1 2 3 32 32 H 0.96998 * 119.99878 * 95.00712 * 4 2 1 33 33 H 1.00906 * 111.00186 * 59.99876 * 9 7 5 34 34 H 1.00895 * 111.00368 * 183.95173 * 9 7 5 35 35 H 1.09000 * 109.47441 * 55.00222 * 10 7 5 36 36 H 1.09002 * 109.47087 * 294.99668 * 10 7 5 37 37 H 1.09001 * 109.47671 * 60.00109 * 11 10 7 38 38 H 1.08998 * 109.47454 * 300.00107 * 11 10 7 39 39 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.78956 * 0.33355 * 23 22 21 41 41 H 1.08000 * 119.60552 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.96747 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.02351 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8584 1.1584 2.4116 7 6 2.6499 -0.7286 3.5875 8 1 3.4563 -1.4077 3.3109 9 7 3.1509 0.2591 4.5526 10 6 1.5067 -1.5249 4.2196 11 6 2.0444 -2.3440 5.3947 12 6 0.9182 -3.1280 6.0178 13 1 -0.0812 -3.0494 5.6160 14 6 1.1647 -3.9493 7.0973 15 7 2.3828 -4.0490 7.5831 16 14 -0.2311 -4.9216 7.8692 17 1 -1.4941 -4.6364 7.1423 18 1 0.0715 -6.3730 7.7861 19 1 -0.3803 -4.5277 9.2933 20 6 2.0324 -0.7104 -1.2305 21 7 2.0193 -1.9804 -1.3841 22 6 2.4969 -2.4791 -2.5403 23 6 2.5971 -3.8179 -2.9699 24 6 3.1239 -4.1128 -4.1906 25 6 3.5716 -3.1050 -5.0332 26 6 3.4862 -1.7885 -4.6400 27 6 2.9500 -1.4679 -3.3945 28 16 2.6966 0.0779 -2.5904 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1526 33 1 2.4215 0.9009 4.8250 34 1 3.5526 -0.1950 5.3592 35 1 1.0764 -2.1957 3.4759 36 1 0.7393 -0.8380 4.5766 37 1 2.4747 -1.6733 6.1384 38 1 2.8118 -3.0309 5.0378 39 1 2.5564 -4.6272 8.3424 40 1 2.2537 -4.6149 -2.3271 41 1 3.1941 -5.1431 -4.5067 42 1 3.9875 -3.3538 -5.9984 43 1 3.8344 -1.0048 -5.2964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818110112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:52 Heat of formation + Delta-G solvation = 5.452711 kcal Electronic energy + Delta-G solvation = -25102.112281 eV Core-core repulsion = 21465.959344 eV Total energy + Delta-G solvation = -3636.152937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81627 -39.74540 -37.65700 -35.70298 -34.98630 -32.84316 -31.50801 -31.30898 -29.87067 -29.48873 -26.57267 -25.68586 -24.17114 -23.49116 -22.59162 -21.07901 -20.30132 -19.89942 -18.85444 -17.45996 -17.18130 -16.30452 -16.18319 -15.69391 -15.36431 -15.21847 -14.80399 -14.61659 -14.41697 -14.26492 -13.99931 -13.83940 -13.34734 -13.13454 -12.86908 -12.78192 -12.41066 -12.31303 -12.13869 -11.96403 -11.72594 -11.56201 -11.24016 -11.08088 -10.92792 -10.65678 -10.50336 -10.05906 -9.97690 -9.90559 -9.30319 -9.20559 -9.12282 -8.98170 -8.49082 -8.43166 -8.18569 -6.07467 -4.10296 0.01583 0.75796 0.83536 1.34710 1.95288 2.87772 3.23258 3.27100 3.34668 3.35080 3.39156 3.42291 4.18065 4.40538 4.41900 4.57108 4.79200 4.87584 4.92860 4.95374 5.09475 5.17674 5.20892 5.28934 5.45443 5.51549 5.59956 5.69234 5.74349 5.77632 5.80450 5.98372 6.05814 6.28994 6.31207 6.41901 6.53729 6.89265 7.25929 7.42986 7.53204 7.62368 7.69062 7.89701 7.91688 8.32370 8.40898 8.95909 9.54593 11.03543 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002556 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.389691 B =10949.946772 C =12221.262311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.222 3.778 3 H 0.109 0.891 4 N -0.722 5.722 5 C 0.530 3.470 6 O -0.537 6.537 7 C 0.076 3.924 8 H 0.097 0.903 9 N -0.830 5.830 10 C -0.137 4.137 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.085 3.915 21 N -0.454 5.454 22 C 0.084 3.916 23 C -0.060 4.060 24 C -0.108 4.108 25 C -0.102 4.102 26 C -0.073 4.073 27 C -0.185 4.185 28 S 0.118 5.882 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.410 0.590 33 H 0.346 0.654 34 H 0.355 0.645 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 4.593 -26.837 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.113 3.887 3 H 0.127 0.873 4 N -0.377 5.377 5 C 0.317 3.683 6 O -0.412 6.412 7 C -0.039 4.039 8 H 0.115 0.885 9 N -0.363 5.363 10 C -0.177 4.177 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.201 4.201 21 N -0.168 5.168 22 C -0.036 4.036 23 C -0.081 4.081 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.095 4.095 27 C -0.304 4.304 28 S 0.375 5.625 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.490 6.361 -26.984 27.835 hybrid contribution -1.276 -2.484 0.844 2.918 sum 1.214 3.877 -26.139 26.453 Atomic orbital electron populations 1.22188 0.92617 1.03619 1.03272 1.19439 0.95069 0.95397 0.78811 0.87336 1.46013 1.68633 1.14715 1.08373 1.20956 0.76226 0.87013 0.84088 1.90631 1.49695 1.16046 1.84861 1.21455 0.98617 0.93204 0.90615 0.88546 1.58740 1.38269 1.19891 1.19352 1.22380 0.96356 0.98748 1.00205 1.19108 0.96603 0.94285 0.91324 1.21217 0.94977 1.25627 1.14181 0.92653 1.25014 0.95587 0.96841 0.96927 1.69961 1.19527 1.38855 1.24905 0.86530 0.82464 0.79831 0.79170 1.19748 1.20959 1.20958 1.26850 1.00073 0.92302 1.00851 1.66069 1.17687 1.11909 1.21104 1.19190 1.00617 0.95090 0.88738 1.20476 0.98167 0.93055 0.96383 1.20768 0.98390 1.00127 0.93603 1.21164 0.99243 0.91903 1.00021 1.20349 0.98831 0.97244 0.93107 1.23944 1.08585 0.96426 1.01407 1.84000 1.60725 1.06851 1.10935 0.91216 0.90324 0.91478 0.75414 0.84118 0.82979 0.92407 0.92609 0.96404 0.96311 0.92954 0.84480 0.84643 0.84708 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.47 37.16 0.35 -1.42 16 2 C 0.22 2.70 3.06 -69.08 -0.21 2.49 16 3 H 0.11 1.33 7.56 -51.93 -0.39 0.94 16 4 N -0.72 -10.03 5.07 -54.93 -0.28 -10.31 16 5 C 0.53 8.76 7.04 -10.98 -0.08 8.69 16 6 O -0.54 -10.08 15.91 5.56 0.09 -9.99 16 7 C 0.08 1.32 3.21 -68.86 -0.22 1.09 16 8 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 9 N -0.83 -14.35 8.94 -5.66 -0.05 -14.40 16 10 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 11 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 12 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.08 0.99 6.14 -13.90 -0.09 0.90 16 21 N -0.45 -5.77 10.13 -9.09 -0.09 -5.86 16 22 C 0.08 0.97 7.00 -84.96 -0.59 0.38 16 23 C -0.06 -0.56 10.05 -39.29 -0.39 -0.96 16 24 C -0.11 -0.75 9.94 -40.12 -0.40 -1.15 16 25 C -0.10 -0.65 10.04 -39.59 -0.40 -1.05 16 26 C -0.07 -0.56 10.07 -39.38 -0.40 -0.96 16 27 C -0.18 -1.89 6.56 -38.54 -0.25 -2.15 16 28 S 0.12 1.15 23.10 -107.50 -2.48 -1.33 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 5.51 8.25 -40.82 -0.34 5.18 16 33 H 0.35 5.99 8.58 -39.29 -0.34 5.66 16 34 H 0.35 6.16 7.55 -39.29 -0.30 5.86 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -32.28 378.03 -10.66 -42.95 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.91 Total: 12.03 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.35 Total: -9.71 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.32 Total: -56.04 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.48 Total: -1.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.28 -10.66 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.402 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds