Wall clock time and date at job start Tue Mar 31 2020 18:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47111 * 2 1 4 4 N 1.46499 * 109.46740 * 119.99995 * 2 1 3 5 5 C 1.34772 * 119.99919 * 274.99324 * 4 2 1 6 6 O 1.21279 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99926 * 180.02562 * 5 4 2 8 8 H 1.08990 * 109.46905 * 40.00676 * 7 5 4 9 9 N 1.46898 * 109.47045 * 160.00562 * 7 5 4 10 10 C 1.52996 * 109.47058 * 280.00535 * 7 5 4 11 11 C 1.52998 * 109.46929 * 175.00132 * 10 7 5 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 7 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 C 1.50699 * 109.46913 * 239.99861 * 2 1 3 21 21 N 1.27928 * 124.23934 * 284.69821 * 20 2 1 22 22 C 1.34669 * 117.84770 * 179.77176 * 21 20 2 23 23 C 1.40961 * 129.68939 * 180.18645 * 22 21 20 24 24 C 1.36183 * 120.42236 * 180.31299 * 23 22 21 25 25 C 1.38783 * 120.78206 * 0.02562 * 24 23 22 26 26 C 1.37658 * 120.06596 * 359.97438 * 25 24 23 27 27 C 1.39341 * 119.95214 * 0.02562 * 26 25 24 28 28 S 1.70648 * 124.23749 * 104.99899 * 20 2 1 29 29 H 1.09002 * 109.46504 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46939 * 300.00042 * 1 2 3 31 31 H 1.09003 * 109.47015 * 60.00274 * 1 2 3 32 32 H 0.96998 * 119.99878 * 95.00712 * 4 2 1 33 33 H 1.00906 * 111.00186 * 59.99876 * 9 7 5 34 34 H 1.00895 * 111.00368 * 183.95173 * 9 7 5 35 35 H 1.09000 * 109.47441 * 55.00222 * 10 7 5 36 36 H 1.09002 * 109.47087 * 294.99668 * 10 7 5 37 37 H 1.09001 * 109.47671 * 60.00109 * 11 10 7 38 38 H 1.08998 * 109.47454 * 300.00107 * 11 10 7 39 39 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 40 40 H 1.07997 * 119.78956 * 0.33355 * 23 22 21 41 41 H 1.08000 * 119.60552 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.96747 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.02351 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8584 1.1584 2.4116 7 6 2.6499 -0.7286 3.5875 8 1 3.4563 -1.4077 3.3109 9 7 3.1509 0.2591 4.5526 10 6 1.5067 -1.5249 4.2196 11 6 2.0444 -2.3440 5.3947 12 6 0.9182 -3.1280 6.0178 13 1 -0.0812 -3.0494 5.6160 14 6 1.1647 -3.9493 7.0973 15 7 2.3828 -4.0490 7.5831 16 14 -0.2311 -4.9216 7.8692 17 1 -1.4941 -4.6364 7.1423 18 1 0.0715 -6.3730 7.7861 19 1 -0.3803 -4.5277 9.2933 20 6 2.0324 -0.7104 -1.2305 21 7 2.0193 -1.9804 -1.3841 22 6 2.4969 -2.4791 -2.5403 23 6 2.5971 -3.8179 -2.9699 24 6 3.1239 -4.1128 -4.1906 25 6 3.5716 -3.1050 -5.0332 26 6 3.4862 -1.7885 -4.6400 27 6 2.9500 -1.4679 -3.3945 28 16 2.6966 0.0779 -2.5904 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1526 33 1 2.4215 0.9009 4.8250 34 1 3.5526 -0.1950 5.3592 35 1 1.0764 -2.1957 3.4759 36 1 0.7393 -0.8380 4.5766 37 1 2.4747 -1.6733 6.1384 38 1 2.8118 -3.0309 5.0378 39 1 2.5564 -4.6272 8.3424 40 1 2.2537 -4.6149 -2.3271 41 1 3.1941 -5.1431 -4.5067 42 1 3.9875 -3.3538 -5.9984 43 1 3.8344 -1.0048 -5.2964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818110112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:51 Heat of formation + Delta-G solvation = -16.624753 kcal Electronic energy + Delta-G solvation = -25103.069632 eV Core-core repulsion = 21465.959344 eV Total energy + Delta-G solvation = -3637.110288 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61819 -40.95601 -38.48434 -37.15697 -36.15827 -34.84985 -32.36236 -32.10913 -31.69672 -30.23436 -28.19344 -26.61826 -25.73272 -24.36446 -23.34585 -22.59551 -21.45623 -21.13452 -19.67136 -18.90721 -18.16723 -18.02499 -17.10346 -16.64642 -16.38965 -16.23061 -16.20242 -15.86548 -15.79090 -15.44186 -14.89308 -14.81344 -14.74908 -14.63672 -14.21542 -13.83328 -13.52075 -13.46144 -13.26158 -12.96376 -12.88883 -12.71120 -12.70594 -12.57584 -12.49144 -11.89211 -11.82259 -11.73968 -11.29753 -11.19052 -10.92756 -10.75512 -10.57422 -10.26620 -9.72642 -9.64984 -9.16455 -8.22381 -6.32614 -0.71430 0.09202 0.14432 0.58509 1.22529 1.37930 1.39160 1.50922 1.54025 2.08490 2.39263 2.60843 2.67969 3.11297 3.45027 3.67810 3.73634 3.77580 3.98578 4.04346 4.08157 4.11512 4.22762 4.27985 4.32781 4.53494 4.64350 4.65598 4.72313 4.82791 4.89846 5.05862 5.07458 5.14375 5.24622 5.28242 5.41175 5.45835 5.64398 5.75441 5.79755 6.04266 6.20451 6.40223 6.47804 6.47847 6.82840 7.10964 7.36483 8.88745 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013495 B = 0.002556 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.389691 B =10949.946772 C =12221.262311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.221 3.779 3 H 0.108 0.892 4 N -0.712 5.712 5 C 0.535 3.465 6 O -0.560 6.560 7 C 0.082 3.918 8 H 0.104 0.896 9 N -0.828 5.828 10 C -0.120 4.120 11 C 0.030 3.970 12 C -0.543 4.543 13 H 0.054 0.946 14 C 0.004 3.996 15 N -0.927 5.927 16 Si 0.960 3.040 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.065 3.935 21 N -0.475 5.475 22 C 0.049 3.951 23 C -0.080 4.080 24 C -0.101 4.101 25 C -0.089 4.089 26 C -0.081 4.081 27 C -0.199 4.199 28 S 0.144 5.856 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.412 0.588 33 H 0.346 0.654 34 H 0.353 0.647 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.005 0.995 38 H -0.001 1.001 39 H 0.264 0.736 40 H 0.137 0.863 41 H 0.166 0.834 42 H 0.172 0.828 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 3.937 -29.281 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.113 3.887 3 H 0.126 0.874 4 N -0.366 5.366 5 C 0.321 3.679 6 O -0.438 6.438 7 C -0.033 4.033 8 H 0.122 0.878 9 N -0.359 5.359 10 C -0.160 4.160 11 C -0.007 4.007 12 C -0.581 4.581 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.785 3.215 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.220 4.220 21 N -0.189 5.189 22 C -0.071 4.071 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.104 4.104 27 C -0.318 4.318 28 S 0.401 5.599 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.155 0.845 41 H 0.183 0.817 42 H 0.190 0.810 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.369 5.700 -29.454 30.094 hybrid contribution -1.171 -2.349 1.457 3.002 sum 1.198 3.351 -27.996 28.222 Atomic orbital electron populations 1.22122 0.92009 1.03237 1.03683 1.19513 0.95569 0.95211 0.78382 0.87371 1.45938 1.67552 1.14725 1.08367 1.20669 0.76129 0.86624 0.84459 1.90620 1.50921 1.16909 1.85304 1.21366 0.97798 0.93149 0.91025 0.87814 1.58753 1.38148 1.19725 1.19309 1.22121 0.96869 0.98293 0.98690 1.18969 0.95393 0.93901 0.92449 1.21638 0.95713 1.26133 1.14615 0.92744 1.25874 0.98082 0.97931 0.97511 1.70070 1.21465 1.39703 1.25486 0.85478 0.79457 0.78361 0.78243 1.19010 1.20301 1.20413 1.26637 1.01433 0.92518 1.01405 1.66027 1.18114 1.12512 1.22264 1.19508 1.02249 0.96336 0.89003 1.20718 0.99296 0.92372 0.97706 1.21183 0.96570 1.01943 0.92434 1.21657 0.97352 0.91025 1.01041 1.20769 0.98421 0.98748 0.92456 1.24229 1.09098 0.96157 1.02340 1.83755 1.60106 1.06420 1.09643 0.91921 0.91614 0.89301 0.75138 0.84095 0.83171 0.91950 0.93252 0.97713 0.98223 0.92720 0.84539 0.81683 0.81046 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.47 71.98 0.68 -2.72 16 2 C 0.22 5.41 3.06 44.25 0.14 5.54 16 3 H 0.11 2.65 7.56 -2.39 -0.02 2.63 16 4 N -0.71 -19.94 5.07 -446.09 -2.26 -22.20 16 5 C 0.53 17.75 7.04 87.66 0.62 18.37 16 6 O -0.56 -21.09 15.91 -3.03 -0.05 -21.13 16 7 C 0.08 2.85 3.21 44.17 0.14 2.99 16 8 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 9 N -0.83 -28.89 8.94 -171.81 -1.54 -30.43 16 10 C -0.12 -4.80 4.78 30.59 0.15 -4.66 16 11 C 0.03 1.50 4.74 29.85 0.14 1.64 16 12 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 13 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 14 C 0.00 0.25 5.46 84.65 0.46 0.71 16 15 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 16 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 C 0.06 1.51 6.14 88.68 0.54 2.06 16 21 N -0.47 -12.20 10.13 -182.52 -1.85 -14.05 16 22 C 0.05 1.11 7.00 39.78 0.28 1.39 16 23 C -0.08 -1.43 10.05 22.46 0.23 -1.21 16 24 C -0.10 -1.13 9.94 21.92 0.22 -0.91 16 25 C -0.09 -0.82 10.04 22.26 0.22 -0.60 16 26 C -0.08 -1.05 10.07 22.40 0.23 -0.83 16 27 C -0.20 -3.86 6.56 22.94 0.15 -3.71 16 28 S 0.14 2.70 23.10 -56.49 -1.30 1.39 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.41 11.25 8.25 -92.71 -0.77 10.48 16 33 H 0.35 12.12 8.58 -89.69 -0.77 11.35 16 34 H 0.35 12.51 7.55 -89.70 -0.68 11.83 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.00 0.24 6.87 -2.39 -0.02 0.22 16 38 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 42 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -69.78 378.03 -1.41 -71.19 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -1.15 Total: 35.96 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.42 Total: -12.00 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -5.36 Total: -121.40 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.05 Total: -21.13 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.30 Total: 1.39 kcal Total: -69.78 -1.41 -71.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.561 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds