Wall clock time and date at job start Tue Mar 31 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 N 1.46497 * 109.47199 * 239.99263 * 2 1 3 5 5 C 1.34781 * 119.99716 * 85.00629 * 4 2 1 6 6 O 1.21286 * 119.99983 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00160 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46753 * 39.99710 * 7 5 4 9 9 N 1.46898 * 109.47192 * 159.99754 * 7 5 4 10 10 C 1.52992 * 109.47482 * 279.99980 * 7 5 4 11 11 C 1.52997 * 109.47482 * 174.99860 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.50700 * 109.47035 * 119.99766 * 2 1 3 21 21 N 1.27935 * 124.23979 * 255.00650 * 20 2 1 22 22 C 1.34655 * 117.84660 * 179.97438 * 21 20 2 23 23 C 1.40971 * 129.68425 * 179.97438 * 22 21 20 24 24 C 1.36179 * 120.42660 * 179.97438 * 23 22 21 25 25 C 1.38794 * 120.77399 * 0.02774 * 24 23 22 26 26 C 1.37651 * 120.07130 * 359.97438 * 25 24 23 27 27 C 1.39340 * 119.95418 * 359.97438 * 26 25 24 28 28 S 1.70649 * 124.24048 * 74.69850 * 20 2 1 29 29 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47240 * 300.00718 * 1 2 3 31 31 H 1.08998 * 109.46851 * 60.00187 * 1 2 3 32 32 H 0.96994 * 120.00502 * 264.99762 * 4 2 1 33 33 H 1.00906 * 111.00043 * 296.04677 * 9 7 5 34 34 H 1.00899 * 111.00057 * 59.99855 * 9 7 5 35 35 H 1.09002 * 109.47103 * 54.99613 * 10 7 5 36 36 H 1.08998 * 109.46862 * 295.00425 * 10 7 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 39 39 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.78748 * 0.02562 * 23 22 21 41 41 H 1.07995 * 119.61295 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.96346 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.02611 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1583 -2.4117 7 6 2.6501 -0.7288 -3.5874 8 1 2.2158 -1.7275 -3.6332 9 7 2.2615 0.0297 -4.7839 10 6 4.1749 -0.8381 -3.5258 11 6 4.6751 -1.6669 -4.7105 12 6 6.1771 -1.7741 -4.6501 13 1 6.7205 -1.2989 -3.8468 14 6 6.8574 -2.4797 -5.6198 15 7 6.1956 -3.0587 -6.5977 16 14 8.7191 -2.6130 -5.5445 17 1 9.1172 -3.2729 -4.2751 18 1 9.2046 -3.4174 -6.6945 19 1 9.3156 -1.2544 -5.6045 20 6 2.0323 -0.7104 1.2305 21 7 2.5302 -0.1193 2.2500 22 6 2.9392 -0.8819 3.2817 23 6 3.5165 -0.5004 4.5099 24 6 3.8629 -1.4416 5.4311 25 6 3.6559 -2.7908 5.1801 26 6 3.0940 -3.1927 3.9895 27 6 2.7323 -2.2437 3.0355 28 16 2.0014 -2.4035 1.4417 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1524 33 1 1.2577 0.0608 -4.8821 34 1 2.6520 0.9599 -4.7650 35 1 4.4670 -1.3227 -2.5941 36 1 4.6126 0.1592 -3.5693 37 1 4.3829 -1.1824 -5.6421 38 1 4.2373 -2.6642 -4.6668 39 1 6.6743 -3.5548 -7.2801 40 1 3.6844 0.5452 4.7219 41 1 4.3039 -1.1345 6.3679 42 1 3.9359 -3.5263 5.9199 43 1 2.9336 -4.2428 3.7948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818110113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:56 Heat of formation + Delta-G solvation = 7.469694 kcal Electronic energy + Delta-G solvation = -25136.381833 eV Core-core repulsion = 21500.316358 eV Total energy + Delta-G solvation = -3636.065474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79061 -39.97497 -37.66945 -35.73029 -35.06246 -32.80971 -31.51210 -31.41166 -30.10427 -29.53386 -26.52489 -25.63642 -24.13676 -23.45780 -22.32390 -21.21118 -20.65024 -19.83161 -18.88074 -17.56698 -16.91733 -16.38409 -16.19840 -15.78736 -15.51371 -15.32686 -15.30399 -14.52385 -14.49360 -14.32982 -14.18359 -13.87838 -13.46672 -13.19093 -12.87336 -12.50221 -12.35717 -12.31533 -12.03864 -12.02685 -11.80160 -11.55320 -11.21394 -10.87693 -10.70015 -10.58663 -10.50141 -10.20016 -9.97892 -9.81057 -9.41021 -9.33435 -9.03662 -9.01200 -8.48749 -8.37969 -8.22420 -5.93729 -3.95837 0.00914 0.75520 0.84260 1.34878 1.93368 2.65455 2.93127 3.31791 3.36418 3.40816 3.43523 3.56341 4.17905 4.40912 4.50170 4.56322 4.77318 4.82056 4.83139 4.90984 4.99499 5.05270 5.15090 5.37268 5.41714 5.45972 5.48992 5.59572 5.72669 5.79040 5.79364 5.85187 5.97543 6.20024 6.29946 6.41927 6.63400 7.06706 7.23265 7.27620 7.48343 7.75300 7.77336 7.95615 8.12572 8.17563 8.48376 9.11811 9.67279 11.17133 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.002964 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.239697 B = 9443.634145 C =11347.876349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 H 0.119 0.881 4 N -0.729 5.729 5 C 0.490 3.510 6 O -0.545 6.545 7 C 0.080 3.920 8 H 0.100 0.900 9 N -0.805 5.805 10 C -0.096 4.096 11 C 0.032 3.968 12 C -0.524 4.524 13 H 0.051 0.949 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.085 3.915 21 N -0.456 5.456 22 C 0.082 3.918 23 C -0.062 4.062 24 C -0.107 4.107 25 C -0.101 4.101 26 C -0.070 4.070 27 C -0.182 4.182 28 S 0.116 5.884 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.402 0.598 33 H 0.335 0.665 34 H 0.349 0.651 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 0.266 23.588 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.104 3.896 3 H 0.137 0.863 4 N -0.383 5.383 5 C 0.276 3.724 6 O -0.422 6.422 7 C -0.036 4.036 8 H 0.118 0.882 9 N -0.333 5.333 10 C -0.135 4.135 11 C -0.005 4.005 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.200 4.200 21 N -0.169 5.169 22 C -0.038 4.038 23 C -0.083 4.083 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.093 4.093 27 C -0.301 4.301 28 S 0.373 5.627 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.238 0.762 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.353 0.256 22.238 25.440 hybrid contribution 1.131 0.375 1.632 2.020 sum -11.222 0.631 23.870 26.384 Atomic orbital electron populations 1.22196 0.92670 1.03005 1.03736 1.19400 0.94576 0.97227 0.78404 0.86318 1.46346 1.68566 1.14254 1.09159 1.22882 0.75839 0.88027 0.85640 1.90662 1.50232 1.16117 1.85182 1.21868 0.99984 0.97533 0.84212 0.88205 1.58997 1.15363 1.22365 1.36577 1.21679 0.88170 1.01751 1.01881 1.19007 0.94771 0.94103 0.92603 1.21243 0.92523 1.32621 1.09809 0.93058 1.24979 0.98074 0.95710 0.95490 1.69961 1.35386 1.34581 1.13247 0.86718 0.86146 0.78080 0.77382 1.20378 1.21308 1.20305 1.26798 0.99817 0.94890 0.98514 1.66097 1.12288 1.38349 1.00173 1.19190 1.02162 0.87450 0.95002 1.20428 0.96978 1.00779 0.90092 1.20762 0.99782 0.92790 0.99487 1.21175 0.98282 0.96353 0.96494 1.20387 0.98349 0.98323 0.92233 1.23934 1.08178 0.98272 0.99689 1.83954 1.60527 1.07056 1.11137 0.91799 0.90981 0.90324 0.76240 0.85366 0.83714 0.92865 0.92727 0.94608 0.96832 0.93035 0.84664 0.84634 0.84596 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.47 37.16 0.35 -1.18 16 2 C 0.21 2.55 3.07 -69.08 -0.21 2.34 16 3 H 0.12 1.65 7.58 -51.93 -0.39 1.26 16 4 N -0.73 -9.19 5.06 -54.93 -0.28 -9.47 16 5 C 0.49 7.45 7.03 -10.98 -0.08 7.38 16 6 O -0.55 -9.57 15.91 5.55 0.09 -9.48 16 7 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 8 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 9 N -0.81 -13.16 8.44 -5.66 -0.05 -13.21 16 10 C -0.10 -1.94 4.78 -26.74 -0.13 -2.07 16 11 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 12 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 16 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.09 1.03 6.21 -13.90 -0.09 0.95 16 21 N -0.46 -6.13 10.57 -9.08 -0.10 -6.22 16 22 C 0.08 1.00 7.00 -84.96 -0.59 0.40 16 23 C -0.06 -0.59 10.05 -39.29 -0.39 -0.98 16 24 C -0.11 -0.76 9.94 -40.12 -0.40 -1.16 16 25 C -0.10 -0.70 10.04 -39.59 -0.40 -1.09 16 26 C -0.07 -0.60 10.07 -39.39 -0.40 -0.99 16 27 C -0.18 -1.99 6.56 -38.54 -0.25 -2.25 16 28 S 0.12 1.20 22.15 -107.50 -2.38 -1.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.40 4.55 7.75 -40.82 -0.32 4.23 16 33 H 0.33 4.66 9.06 -39.29 -0.36 4.31 16 34 H 0.35 5.81 8.58 -39.29 -0.34 5.47 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -33.79 379.06 -10.63 -44.43 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.00 Total: 9.19 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.35 Total: -10.45 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.31 Total: -55.04 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.38 Total: -1.18 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.79 -10.63 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.897 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds