Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 N 1.46497 * 109.47199 * 239.99263 * 2 1 3 5 5 C 1.34781 * 119.99716 * 85.00629 * 4 2 1 6 6 O 1.21286 * 119.99983 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00160 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46753 * 39.99710 * 7 5 4 9 9 N 1.46898 * 109.47192 * 159.99754 * 7 5 4 10 10 C 1.52992 * 109.47482 * 279.99980 * 7 5 4 11 11 C 1.52997 * 109.47482 * 174.99860 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.50700 * 109.47035 * 119.99766 * 2 1 3 21 21 N 1.27935 * 124.23979 * 255.00650 * 20 2 1 22 22 C 1.34655 * 117.84660 * 179.97438 * 21 20 2 23 23 C 1.40971 * 129.68425 * 179.97438 * 22 21 20 24 24 C 1.36179 * 120.42660 * 179.97438 * 23 22 21 25 25 C 1.38794 * 120.77399 * 0.02774 * 24 23 22 26 26 C 1.37651 * 120.07130 * 359.97438 * 25 24 23 27 27 C 1.39340 * 119.95418 * 359.97438 * 26 25 24 28 28 S 1.70649 * 124.24048 * 74.69850 * 20 2 1 29 29 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47240 * 300.00718 * 1 2 3 31 31 H 1.08998 * 109.46851 * 60.00187 * 1 2 3 32 32 H 0.96994 * 120.00502 * 264.99762 * 4 2 1 33 33 H 1.00906 * 111.00043 * 296.04677 * 9 7 5 34 34 H 1.00899 * 111.00057 * 59.99855 * 9 7 5 35 35 H 1.09002 * 109.47103 * 54.99613 * 10 7 5 36 36 H 1.08998 * 109.46862 * 295.00425 * 10 7 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 39 39 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.78748 * 0.02562 * 23 22 21 41 41 H 1.07995 * 119.61295 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.96346 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.02611 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1583 -2.4117 7 6 2.6501 -0.7288 -3.5874 8 1 2.2158 -1.7275 -3.6332 9 7 2.2615 0.0297 -4.7839 10 6 4.1749 -0.8381 -3.5258 11 6 4.6751 -1.6669 -4.7105 12 6 6.1771 -1.7741 -4.6501 13 1 6.7205 -1.2989 -3.8468 14 6 6.8574 -2.4797 -5.6198 15 7 6.1956 -3.0587 -6.5977 16 14 8.7191 -2.6130 -5.5445 17 1 9.1172 -3.2729 -4.2751 18 1 9.2046 -3.4174 -6.6945 19 1 9.3156 -1.2544 -5.6045 20 6 2.0323 -0.7104 1.2305 21 7 2.5302 -0.1193 2.2500 22 6 2.9392 -0.8819 3.2817 23 6 3.5165 -0.5004 4.5099 24 6 3.8629 -1.4416 5.4311 25 6 3.6559 -2.7908 5.1801 26 6 3.0940 -3.1927 3.9895 27 6 2.7323 -2.2437 3.0355 28 16 2.0014 -2.4035 1.4417 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1524 33 1 1.2577 0.0608 -4.8821 34 1 2.6520 0.9599 -4.7650 35 1 4.4670 -1.3227 -2.5941 36 1 4.6126 0.1592 -3.5693 37 1 4.3829 -1.1824 -5.6421 38 1 4.2373 -2.6642 -4.6668 39 1 6.6743 -3.5548 -7.2801 40 1 3.6844 0.5452 4.7219 41 1 4.3039 -1.1345 6.3679 42 1 3.9359 -3.5263 5.9199 43 1 2.9336 -4.2428 3.7948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818110113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = -16.378087 kcal Electronic energy + Delta-G solvation = -25137.415950 eV Core-core repulsion = 21500.316358 eV Total energy + Delta-G solvation = -3637.099592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61637 -41.12344 -38.49244 -36.97536 -36.38010 -34.82127 -32.39522 -32.14504 -31.92289 -30.28907 -28.15252 -26.60968 -25.53495 -24.39255 -23.27703 -22.25296 -22.09500 -21.13455 -19.65778 -18.84969 -18.19826 -17.72985 -17.42459 -16.87395 -16.58183 -16.44129 -16.22917 -16.05953 -15.64357 -15.48178 -15.04799 -14.96444 -14.64469 -14.29504 -14.15151 -13.83250 -13.56082 -13.43793 -13.27623 -12.93809 -12.79092 -12.77409 -12.64085 -12.53608 -12.28285 -11.91037 -11.79246 -11.66854 -11.27900 -11.22395 -11.02700 -10.83635 -10.48954 -10.45500 -9.79852 -9.61618 -9.20214 -8.13892 -6.23930 -0.75324 0.06172 0.11387 0.53839 1.15725 1.39872 1.42295 1.43740 1.51597 1.89168 2.44240 2.63748 2.69644 3.19019 3.43011 3.52725 3.68228 3.80489 3.93174 4.02456 4.09608 4.10438 4.25326 4.29191 4.29690 4.53817 4.57659 4.70273 4.75793 4.85696 4.92396 5.02909 5.06041 5.16384 5.22461 5.23766 5.37579 5.56801 5.72708 5.84765 5.98863 6.05104 6.27208 6.30707 6.43803 6.53509 6.94256 6.97752 7.43909 8.97038 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.002964 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.239697 B = 9443.634145 C =11347.876349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.216 3.784 3 H 0.095 0.905 4 N -0.716 5.716 5 C 0.498 3.502 6 O -0.569 6.569 7 C 0.088 3.912 8 H 0.116 0.884 9 N -0.816 5.816 10 C -0.084 4.084 11 C 0.041 3.959 12 C -0.547 4.547 13 H 0.053 0.947 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.957 3.043 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.066 3.934 21 N -0.482 5.482 22 C 0.046 3.954 23 C -0.080 4.080 24 C -0.099 4.099 25 C -0.089 4.089 26 C -0.082 4.082 27 C -0.200 4.200 28 S 0.139 5.861 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.410 0.590 33 H 0.349 0.651 34 H 0.346 0.654 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.008 0.992 38 H -0.003 1.003 39 H 0.263 0.737 40 H 0.140 0.860 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.660 -1.037 26.067 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.107 3.893 3 H 0.113 0.887 4 N -0.370 5.370 5 C 0.284 3.716 6 O -0.447 6.447 7 C -0.028 4.028 8 H 0.134 0.866 9 N -0.345 5.345 10 C -0.122 4.122 11 C 0.004 3.996 12 C -0.585 4.585 13 H 0.071 0.929 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.782 3.218 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.197 1.197 20 C -0.218 4.218 21 N -0.197 5.197 22 C -0.073 4.073 23 C -0.101 4.101 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.105 4.105 27 C -0.319 4.319 28 S 0.396 5.604 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.247 0.753 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.015 0.985 39 H 0.071 0.929 40 H 0.158 0.842 41 H 0.187 0.813 42 H 0.191 0.809 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.786 -1.059 24.743 27.428 hybrid contribution 0.974 0.732 0.996 1.573 sum -10.812 -0.327 25.739 27.920 Atomic orbital electron populations 1.22133 0.90873 1.04022 1.03760 1.19367 0.95870 0.95886 0.78157 0.88679 1.46205 1.67548 1.14528 1.08721 1.22464 0.75822 0.87461 0.85870 1.90657 1.51519 1.17023 1.85530 1.21652 0.97475 0.98632 0.85046 0.86640 1.58972 1.16616 1.22202 1.36715 1.21405 0.90862 0.99991 0.99961 1.18810 0.93632 0.93673 0.93498 1.21702 0.94217 1.32598 1.09952 0.92913 1.25862 1.03181 0.95290 0.95063 1.70087 1.37406 1.35299 1.13980 0.85632 0.80028 0.78302 0.77851 1.19207 1.20731 1.19718 1.26677 1.00751 0.96059 0.98352 1.66062 1.12829 1.39779 1.00992 1.19557 1.03884 0.88110 0.95778 1.20728 0.97519 1.01883 0.89968 1.21211 0.98196 0.92583 0.99915 1.21685 0.96047 0.97018 0.96303 1.20797 0.98390 0.98965 0.92353 1.24234 1.08800 0.98490 1.00345 1.83677 1.60349 1.05128 1.11238 0.90250 0.90171 0.91014 0.75311 0.83738 0.84032 0.91916 0.93923 0.97347 0.98484 0.92870 0.84220 0.81301 0.80937 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.47 71.98 0.68 -2.17 16 2 C 0.22 5.24 3.07 44.25 0.14 5.37 16 3 H 0.10 2.77 7.58 -2.39 -0.02 2.75 16 4 N -0.72 -17.89 5.06 -446.09 -2.26 -20.15 16 5 C 0.50 15.11 7.03 87.66 0.62 15.72 16 6 O -0.57 -20.12 15.91 -3.05 -0.05 -20.17 16 7 C 0.09 2.86 3.15 44.17 0.14 3.00 16 8 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 9 N -0.82 -26.85 8.44 -171.81 -1.45 -28.30 16 10 C -0.08 -3.40 4.78 30.59 0.15 -3.25 16 11 C 0.04 2.13 4.86 29.85 0.15 2.27 16 12 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 14 C 0.00 0.24 5.46 84.66 0.46 0.70 16 15 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 16 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 C 0.07 1.62 6.21 88.68 0.55 2.17 16 21 N -0.48 -13.28 10.57 -182.51 -1.93 -15.21 16 22 C 0.05 1.12 7.00 39.79 0.28 1.39 16 23 C -0.08 -1.45 10.05 22.46 0.23 -1.22 16 24 C -0.10 -1.12 9.94 21.92 0.22 -0.90 16 25 C -0.09 -0.91 10.04 22.26 0.22 -0.68 16 26 C -0.08 -1.20 10.07 22.40 0.23 -0.98 16 27 C -0.20 -4.19 6.56 22.94 0.15 -4.04 16 28 S 0.14 2.79 22.15 -56.49 -1.25 1.54 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.41 8.98 7.75 -92.71 -0.72 8.26 16 33 H 0.35 9.63 9.06 -89.69 -0.81 8.82 16 34 H 0.35 11.72 8.58 -89.69 -0.77 10.95 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.01 0.46 7.75 -2.39 -0.02 0.44 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -74.26 379.06 -1.43 -75.69 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -1.24 Total: 29.75 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.43 Total: -13.66 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -5.35 Total: -119.86 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.25 Total: 1.54 kcal Total: -74.26 -1.43 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.313 kcal (2) G-P(sol) polarization free energy of solvation -74.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds