Wall clock time and date at job start Tue Mar 31 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 N 1.46499 * 109.47324 * 239.99100 * 2 1 3 5 5 C 1.34780 * 119.99902 * 85.00356 * 4 2 1 6 6 O 1.21286 * 119.99567 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00485 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47184 * 320.00412 * 7 5 4 9 9 N 1.46893 * 109.47328 * 200.00012 * 7 5 4 10 10 C 1.53002 * 109.47170 * 79.99743 * 7 5 4 11 11 C 1.52993 * 109.47405 * 185.00530 * 10 7 5 12 12 C 1.50696 * 109.47369 * 180.02562 * 11 10 7 13 13 H 1.07999 * 119.99896 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00051 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00226 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46752 * 60.00039 * 16 14 12 18 18 H 1.48496 * 109.47123 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47266 * 300.00297 * 16 14 12 20 20 C 1.50706 * 109.46766 * 119.99625 * 2 1 3 21 21 N 1.27928 * 124.23526 * 254.99440 * 20 2 1 22 22 C 1.34661 * 117.84433 * 180.02562 * 21 20 2 23 23 C 1.40968 * 129.68917 * 179.97438 * 22 21 20 24 24 C 1.36184 * 120.42764 * 179.72839 * 23 22 21 25 25 C 1.38793 * 120.77664 * 0.25700 * 24 23 22 26 26 C 1.37659 * 120.06784 * 0.02562 * 25 24 23 27 27 C 1.39339 * 119.95210 * 359.97438 * 26 25 24 28 28 S 1.70653 * 124.23780 * 75.58389 * 20 2 1 29 29 H 1.08992 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46781 * 300.00967 * 1 2 3 31 31 H 1.09002 * 109.46408 * 60.00394 * 1 2 3 32 32 H 0.96997 * 120.00267 * 265.00629 * 4 2 1 33 33 H 1.00897 * 110.99825 * 299.99837 * 9 7 5 34 34 H 1.00896 * 110.99868 * 63.95676 * 9 7 5 35 35 H 1.09002 * 109.46955 * 305.00676 * 10 7 5 36 36 H 1.08999 * 109.46931 * 64.99900 * 10 7 5 37 37 H 1.09007 * 109.46747 * 300.00092 * 11 10 7 38 38 H 1.08999 * 109.47590 * 59.99774 * 11 10 7 39 39 H 0.96998 * 119.99890 * 179.97438 * 15 14 12 40 40 H 1.08002 * 119.78991 * 0.02562 * 23 22 21 41 41 H 1.07995 * 119.61688 * 180.27829 * 24 23 22 42 42 H 1.07993 * 119.96996 * 179.97438 * 25 24 23 43 43 H 1.07992 * 120.02765 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1472 -0.0186 -2.3571 6 8 1.8592 1.1584 -2.4115 7 6 2.6490 -0.7291 -3.5876 8 1 3.4550 -1.4090 -3.3113 9 7 3.1504 0.2581 -4.5529 10 6 1.5049 -1.5247 -4.2194 11 6 2.0416 -2.3443 -5.3945 12 6 0.9146 -3.1274 -6.0171 13 1 -0.0844 -3.0487 -5.6146 14 6 1.1590 -3.9443 -7.1006 15 7 2.3757 -4.0404 -7.5905 16 14 -0.2379 -4.9156 -7.8720 17 1 -1.2831 -3.9789 -8.3573 18 1 0.2831 -5.7109 -9.0127 19 1 -0.8240 -5.8293 -6.8587 20 6 2.0323 -0.7104 1.2306 21 7 2.5303 -0.1193 2.2499 22 6 2.9402 -0.8819 3.2813 23 6 3.5179 -0.5004 4.5093 24 6 3.8606 -1.4414 5.4321 25 6 3.6537 -2.7907 5.1812 26 6 3.0967 -3.1929 3.9883 27 6 2.7398 -2.2442 3.0322 28 16 2.0211 -2.4048 1.4328 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 2.2490 -1.6319 -1.1524 33 1 2.4213 0.9003 -4.8250 34 1 3.9484 0.7524 -4.1831 35 1 1.0744 -2.1951 -3.4754 36 1 0.7379 -0.8372 -4.5760 37 1 2.4721 -1.6738 -6.1384 38 1 2.8086 -3.0317 -5.0379 39 1 2.5476 -4.6154 -8.3526 40 1 3.6854 0.5452 4.7216 41 1 4.2982 -1.1342 6.3705 42 1 3.9308 -3.5259 5.9221 43 1 2.9357 -4.2429 3.7939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818110119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:00 Heat of formation + Delta-G solvation = 7.335714 kcal Electronic energy + Delta-G solvation = -25026.151722 eV Core-core repulsion = 21390.080438 eV Total energy + Delta-G solvation = -3636.071284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.82753 -39.98111 -37.69960 -35.73249 -35.06821 -32.81413 -31.55497 -31.40667 -30.10855 -29.55063 -26.54534 -25.62544 -24.13688 -23.49115 -22.34757 -21.21660 -20.68465 -19.82727 -18.91243 -17.58126 -16.93668 -16.42569 -16.18235 -15.80907 -15.51988 -15.33688 -15.24714 -14.79864 -14.39359 -14.35454 -14.10104 -13.85466 -13.52594 -13.17428 -12.89190 -12.47442 -12.37807 -12.32663 -12.05377 -12.02150 -11.77957 -11.54668 -11.23739 -10.88331 -10.70578 -10.59300 -10.54285 -10.20469 -10.01143 -9.81727 -9.39951 -9.34982 -9.07609 -9.01686 -8.52820 -8.38240 -8.22800 -5.94133 -3.96424 -0.03192 0.71064 0.81194 1.32517 1.89234 2.65982 2.90469 3.26775 3.35725 3.40481 3.42681 3.55565 4.14271 4.37564 4.49335 4.52520 4.75415 4.79709 4.83970 4.89330 4.99351 5.07696 5.11527 5.41269 5.41553 5.43066 5.49591 5.62087 5.69268 5.75230 5.79031 5.92939 5.94263 6.19194 6.26475 6.41004 6.62200 7.05975 7.19744 7.26658 7.48267 7.74945 7.77192 7.95111 8.12233 8.17354 8.47506 9.11325 9.66695 11.16704 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002451 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.015555 B =11420.339215 C =12363.116722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.214 3.786 3 H 0.118 0.882 4 N -0.729 5.729 5 C 0.490 3.510 6 O -0.545 6.545 7 C 0.079 3.921 8 H 0.099 0.901 9 N -0.805 5.805 10 C -0.096 4.096 11 C 0.031 3.969 12 C -0.523 4.523 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.085 3.915 21 N -0.458 5.458 22 C 0.082 3.918 23 C -0.063 4.063 24 C -0.107 4.107 25 C -0.102 4.102 26 C -0.070 4.070 27 C -0.184 4.184 28 S 0.121 5.879 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.402 0.598 33 H 0.349 0.651 34 H 0.335 0.665 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 3.984 27.306 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.105 3.895 3 H 0.136 0.864 4 N -0.384 5.384 5 C 0.276 3.724 6 O -0.422 6.422 7 C -0.037 4.037 8 H 0.117 0.883 9 N -0.333 5.333 10 C -0.134 4.134 11 C -0.006 4.006 12 C -0.561 4.561 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.200 4.200 21 N -0.171 5.171 22 C -0.039 4.039 23 C -0.084 4.084 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.303 4.303 28 S 0.378 5.622 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.237 0.763 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.027 3.927 25.900 26.274 hybrid contribution -0.510 -0.037 1.231 1.333 sum 1.517 3.890 27.131 27.450 Atomic orbital electron populations 1.22212 0.92513 1.03291 1.03800 1.19404 0.94829 0.96982 0.78309 0.86385 1.46349 1.68680 1.14184 1.09146 1.22878 0.76329 0.87888 0.85273 1.90662 1.50181 1.16353 1.84995 1.21877 1.00176 0.94888 0.86717 0.88287 1.58993 1.11752 1.21980 1.40585 1.21676 0.94377 0.97539 0.99802 1.19013 0.95827 0.93991 0.91747 1.21229 0.95029 1.25797 1.14073 0.93023 1.24990 0.95384 0.96973 0.96965 1.69960 1.19574 1.38984 1.24638 0.86714 0.82614 0.80129 0.78837 1.20312 1.21351 1.20374 1.26839 0.99649 0.94987 0.98557 1.66110 1.12406 1.38345 1.00221 1.19199 1.02168 0.87467 0.95034 1.20421 0.97074 1.00739 0.90122 1.20761 0.99842 0.92794 0.99426 1.21177 0.98364 0.96348 0.96478 1.20399 0.98301 0.98370 0.92187 1.23973 1.08260 0.98266 0.99781 1.84121 1.60809 1.06734 1.10508 0.91614 0.91059 0.90094 0.76258 0.83719 0.85353 0.92766 0.92684 0.94632 0.96853 0.93032 0.84703 0.84653 0.84605 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.47 37.16 0.35 -1.36 16 2 C 0.21 2.56 3.07 -69.08 -0.21 2.34 16 3 H 0.12 1.59 7.58 -51.93 -0.39 1.19 16 4 N -0.73 -9.17 5.06 -54.93 -0.28 -9.45 16 5 C 0.49 7.44 7.03 -10.99 -0.08 7.36 16 6 O -0.55 -9.55 15.91 5.55 0.09 -9.46 16 7 C 0.08 1.29 3.15 -68.87 -0.22 1.08 16 8 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 9 N -0.81 -13.26 8.44 -5.66 -0.05 -13.31 16 10 C -0.10 -1.87 4.78 -26.73 -0.13 -2.00 16 11 C 0.03 0.79 4.86 -27.89 -0.14 0.65 16 12 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 13 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.09 1.00 6.22 -13.90 -0.09 0.91 16 21 N -0.46 -5.83 10.57 -9.08 -0.10 -5.93 16 22 C 0.08 0.93 7.00 -84.96 -0.59 0.34 16 23 C -0.06 -0.55 10.05 -39.29 -0.39 -0.94 16 24 C -0.11 -0.69 9.94 -40.12 -0.40 -1.09 16 25 C -0.10 -0.64 10.04 -39.59 -0.40 -1.03 16 26 C -0.07 -0.55 10.07 -39.38 -0.40 -0.95 16 27 C -0.18 -1.91 6.56 -38.54 -0.25 -2.16 16 28 S 0.12 1.23 22.12 -107.50 -2.38 -1.15 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.40 4.53 7.72 -40.82 -0.31 4.21 16 33 H 0.35 5.79 8.58 -39.29 -0.34 5.45 16 34 H 0.33 4.80 9.06 -39.29 -0.36 4.45 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.97 7.75 -51.92 -0.40 0.57 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -33.27 379.01 -10.63 -43.90 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.00 Total: 9.30 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.35 Total: -10.18 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.31 Total: -54.67 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.38 Total: -1.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.27 -10.63 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.236 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds