Wall clock time and date at job start Tue Mar 31 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47469 * 2 1 4 4 N 1.46499 * 109.47324 * 239.99100 * 2 1 3 5 5 C 1.34780 * 119.99902 * 85.00356 * 4 2 1 6 6 O 1.21286 * 119.99567 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00485 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47184 * 320.00412 * 7 5 4 9 9 N 1.46893 * 109.47328 * 200.00012 * 7 5 4 10 10 C 1.53002 * 109.47170 * 79.99743 * 7 5 4 11 11 C 1.52993 * 109.47405 * 185.00530 * 10 7 5 12 12 C 1.50696 * 109.47369 * 180.02562 * 11 10 7 13 13 H 1.07999 * 119.99896 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00051 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00226 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99995 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46752 * 60.00039 * 16 14 12 18 18 H 1.48496 * 109.47123 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47266 * 300.00297 * 16 14 12 20 20 C 1.50706 * 109.46766 * 119.99625 * 2 1 3 21 21 N 1.27928 * 124.23526 * 254.99440 * 20 2 1 22 22 C 1.34661 * 117.84433 * 180.02562 * 21 20 2 23 23 C 1.40968 * 129.68917 * 179.97438 * 22 21 20 24 24 C 1.36184 * 120.42764 * 179.72839 * 23 22 21 25 25 C 1.38793 * 120.77664 * 0.25700 * 24 23 22 26 26 C 1.37659 * 120.06784 * 0.02562 * 25 24 23 27 27 C 1.39339 * 119.95210 * 359.97438 * 26 25 24 28 28 S 1.70653 * 124.23780 * 75.58389 * 20 2 1 29 29 H 1.08992 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46781 * 300.00967 * 1 2 3 31 31 H 1.09002 * 109.46408 * 60.00394 * 1 2 3 32 32 H 0.96997 * 120.00267 * 265.00629 * 4 2 1 33 33 H 1.00897 * 110.99825 * 299.99837 * 9 7 5 34 34 H 1.00896 * 110.99868 * 63.95676 * 9 7 5 35 35 H 1.09002 * 109.46955 * 305.00676 * 10 7 5 36 36 H 1.08999 * 109.46931 * 64.99900 * 10 7 5 37 37 H 1.09007 * 109.46747 * 300.00092 * 11 10 7 38 38 H 1.08999 * 109.47590 * 59.99774 * 11 10 7 39 39 H 0.96998 * 119.99890 * 179.97438 * 15 14 12 40 40 H 1.08002 * 119.78991 * 0.02562 * 23 22 21 41 41 H 1.07995 * 119.61688 * 180.27829 * 24 23 22 42 42 H 1.07993 * 119.96996 * 179.97438 * 25 24 23 43 43 H 1.07992 * 120.02765 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1472 -0.0186 -2.3571 6 8 1.8592 1.1584 -2.4115 7 6 2.6490 -0.7291 -3.5876 8 1 3.4550 -1.4090 -3.3113 9 7 3.1504 0.2581 -4.5529 10 6 1.5049 -1.5247 -4.2194 11 6 2.0416 -2.3443 -5.3945 12 6 0.9146 -3.1274 -6.0171 13 1 -0.0844 -3.0487 -5.6146 14 6 1.1590 -3.9443 -7.1006 15 7 2.3757 -4.0404 -7.5905 16 14 -0.2379 -4.9156 -7.8720 17 1 -1.2831 -3.9789 -8.3573 18 1 0.2831 -5.7109 -9.0127 19 1 -0.8240 -5.8293 -6.8587 20 6 2.0323 -0.7104 1.2306 21 7 2.5303 -0.1193 2.2499 22 6 2.9402 -0.8819 3.2813 23 6 3.5179 -0.5004 4.5093 24 6 3.8606 -1.4414 5.4321 25 6 3.6537 -2.7907 5.1812 26 6 3.0967 -3.1929 3.9883 27 6 2.7398 -2.2442 3.0322 28 16 2.0211 -2.4048 1.4328 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 2.2490 -1.6319 -1.1524 33 1 2.4213 0.9003 -4.8250 34 1 3.9484 0.7524 -4.1831 35 1 1.0744 -2.1951 -3.4754 36 1 0.7379 -0.8372 -4.5760 37 1 2.4721 -1.6738 -6.1384 38 1 2.8086 -3.0317 -5.0379 39 1 2.5476 -4.6154 -8.3526 40 1 3.6854 0.5452 4.7216 41 1 4.2982 -1.1342 6.3705 42 1 3.9308 -3.5259 5.9221 43 1 2.9357 -4.2429 3.7939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818110119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:59 Heat of formation + Delta-G solvation = -15.964897 kcal Electronic energy + Delta-G solvation = -25027.162113 eV Core-core repulsion = 21390.080438 eV Total energy + Delta-G solvation = -3637.081674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61754 -41.12385 -38.49231 -36.96131 -36.37949 -34.80339 -32.39200 -32.14108 -31.91038 -30.28842 -28.16465 -26.58562 -25.52460 -24.38820 -23.26211 -22.25419 -22.10124 -21.11672 -19.65767 -18.84047 -18.20047 -17.71712 -17.42300 -16.81426 -16.57420 -16.43319 -16.20311 -16.08094 -15.83155 -15.25413 -15.07169 -14.98688 -14.65040 -14.25965 -14.19027 -13.79192 -13.56916 -13.43372 -13.26306 -12.93696 -12.77556 -12.76031 -12.63519 -12.51696 -12.27043 -11.89764 -11.77120 -11.64336 -11.25842 -11.22547 -11.00958 -10.83974 -10.47506 -10.45033 -9.80019 -9.62242 -9.20828 -8.11547 -6.21508 -0.75622 0.06259 0.11420 0.54919 1.16130 1.40327 1.44081 1.46049 1.53713 1.87625 2.46334 2.63127 2.70574 3.21610 3.42653 3.52687 3.68399 3.80540 3.92948 4.02748 4.09082 4.11244 4.25556 4.29489 4.31034 4.53169 4.57556 4.69602 4.79563 4.86015 4.95083 5.03359 5.06862 5.16335 5.23017 5.27363 5.38007 5.59774 5.72897 5.86903 6.01151 6.04835 6.27222 6.32570 6.42896 6.51333 6.97162 6.97603 7.46430 8.99458 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002451 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.015555 B =11420.339215 C =12363.116722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H 0.100 0.900 4 N -0.716 5.716 5 C 0.499 3.501 6 O -0.569 6.569 7 C 0.086 3.914 8 H 0.110 0.890 9 N -0.817 5.817 10 C -0.082 4.082 11 C 0.039 3.961 12 C -0.542 4.542 13 H 0.057 0.943 14 C 0.001 3.999 15 N -0.930 5.930 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.068 3.932 21 N -0.479 5.479 22 C 0.046 3.954 23 C -0.078 4.078 24 C -0.098 4.098 25 C -0.088 4.088 26 C -0.083 4.083 27 C -0.199 4.199 28 S 0.134 5.866 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.410 0.590 33 H 0.347 0.653 34 H 0.347 0.653 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.006 0.994 38 H -0.006 1.006 39 H 0.261 0.739 40 H 0.141 0.859 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 2.601 29.803 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.109 3.891 3 H 0.118 0.882 4 N -0.370 5.370 5 C 0.284 3.716 6 O -0.447 6.447 7 C -0.030 4.030 8 H 0.128 0.872 9 N -0.346 5.346 10 C -0.121 4.121 11 C 0.002 3.998 12 C -0.580 4.580 13 H 0.075 0.925 14 C -0.197 4.197 15 N -0.570 5.570 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.216 4.216 21 N -0.193 5.193 22 C -0.073 4.073 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.106 4.106 27 C -0.317 4.317 28 S 0.390 5.610 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.012 0.988 39 H 0.070 0.930 40 H 0.159 0.841 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.634 2.537 28.431 28.590 hybrid contribution -0.292 0.365 0.622 0.778 sum 1.342 2.901 29.053 29.228 Atomic orbital electron populations 1.22156 0.91551 1.03861 1.03651 1.19326 0.95493 0.96029 0.78211 0.88169 1.46204 1.67623 1.14442 1.08753 1.22452 0.76152 0.87401 0.85561 1.90658 1.51313 1.17315 1.85429 1.21671 0.99332 0.94882 0.87072 0.87208 1.58976 1.12282 1.22243 1.41079 1.21409 0.95070 0.97261 0.98310 1.18828 0.94729 0.93407 0.92871 1.21702 0.95933 1.25984 1.14392 0.92468 1.25897 0.97963 0.98175 0.97627 1.70098 1.21773 1.39933 1.25235 0.85610 0.79330 0.78715 0.78021 1.19616 1.21102 1.19042 1.26615 1.00771 0.95908 0.98352 1.66066 1.12707 1.39643 1.00926 1.19561 1.03907 0.88028 0.95816 1.20727 0.97423 1.01903 0.89876 1.21214 0.98222 0.92531 0.99894 1.21683 0.96016 0.97067 0.96211 1.20792 0.98460 0.98947 0.92355 1.24230 1.08806 0.98531 1.00167 1.83892 1.60885 1.05157 1.11034 0.90644 0.90009 0.91375 0.75327 0.83899 0.83999 0.91213 0.93471 0.97575 0.98755 0.92987 0.84101 0.81252 0.80980 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.47 71.98 0.68 -2.60 16 2 C 0.22 5.27 3.07 44.25 0.14 5.41 16 3 H 0.10 2.80 7.58 -2.39 -0.02 2.78 16 4 N -0.72 -17.88 5.06 -446.08 -2.26 -20.14 16 5 C 0.50 15.11 7.03 87.66 0.62 15.73 16 6 O -0.57 -20.08 15.91 -3.05 -0.05 -20.13 16 7 C 0.09 2.82 3.15 44.17 0.14 2.96 16 8 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 9 N -0.82 -27.26 8.44 -171.81 -1.45 -28.71 16 10 C -0.08 -3.22 4.78 30.59 0.15 -3.07 16 11 C 0.04 1.99 4.86 29.84 0.15 2.13 16 12 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 13 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 14 C 0.00 0.07 5.46 84.66 0.46 0.53 16 15 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 16 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 C 0.07 1.61 6.22 88.68 0.55 2.16 16 21 N -0.48 -12.42 10.57 -182.50 -1.93 -14.35 16 22 C 0.05 1.04 7.00 39.79 0.28 1.32 16 23 C -0.08 -1.27 10.05 22.46 0.23 -1.05 16 24 C -0.10 -0.95 9.94 21.92 0.22 -0.73 16 25 C -0.09 -0.78 10.04 22.27 0.22 -0.55 16 26 C -0.08 -1.12 10.07 22.40 0.23 -0.89 16 27 C -0.20 -3.93 6.56 22.94 0.15 -3.78 16 28 S 0.13 2.64 22.12 -56.49 -1.25 1.39 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.41 8.99 7.72 -92.71 -0.72 8.27 16 33 H 0.35 11.75 8.58 -89.70 -0.77 10.98 16 34 H 0.35 10.00 9.06 -89.70 -0.81 9.19 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.01 0.33 7.75 -2.38 -0.02 0.31 16 38 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.17 0.27 8.06 -2.91 -0.02 0.24 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -72.97 379.01 -1.43 -74.40 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -1.24 Total: 30.18 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.43 Total: -12.57 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -5.35 Total: -119.42 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.25 Total: 1.39 kcal Total: -72.97 -1.43 -74.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818110119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.433 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds