Wall clock time and date at job start Tue Mar 31 2020 17:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47200 * 2 1 4 4 C 1.39664 * 126.06807 * 125.01680 * 3 2 1 5 5 C 1.38419 * 105.35890 * 179.97438 * 4 3 2 6 6 C 1.47127 * 126.88958 * 180.02562 * 5 4 3 7 7 O 1.21654 * 120.00008 * 7.18911 * 6 5 4 8 8 N 1.34773 * 120.00274 * 187.18791 * 6 5 4 9 9 C 1.40003 * 120.00247 * 181.71117 * 8 6 5 10 10 C 1.38738 * 120.07377 * 334.05169 * 9 8 6 11 11 C 1.38180 * 120.01312 * 179.77370 * 10 9 8 12 12 C 1.38560 * 120.18089 * 0.50402 * 11 10 9 13 13 F 1.35098 * 119.92091 * 179.77051 * 12 11 10 14 14 C 1.38348 * 120.15682 * 359.74729 * 12 11 10 15 15 C 1.38731 * 119.97805 * 0.02562 * 14 12 11 16 16 O 1.35777 * 120.08613 * 179.97438 * 15 14 12 17 17 C 1.34801 * 116.99820 * 0.65948 * 16 15 14 18 18 H 1.08004 * 120.00539 * 3.80965 * 17 16 15 19 19 C 1.38640 * 120.00057 * 183.81377 * 17 16 15 20 20 N 1.31570 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00483 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46982 * 59.99496 * 21 19 17 23 23 H 1.48494 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47186 * 300.00044 * 21 19 17 25 25 N 1.36604 * 106.22920 * 359.97438 * 5 4 3 26 26 C 1.46496 * 125.19286 * 180.26593 * 25 5 4 27 27 N 1.28441 * 109.61682 * 359.97438 * 25 5 4 28 28 H 1.09000 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47465 * 300.00324 * 1 2 3 30 30 H 1.09000 * 109.46904 * 59.99891 * 1 2 3 31 31 H 1.09003 * 109.47261 * 240.00134 * 2 1 3 32 32 H 1.09000 * 109.46904 * 120.00109 * 2 1 3 33 33 H 1.08003 * 127.32400 * 0.02562 * 4 3 2 34 34 H 0.97000 * 120.00144 * 1.71387 * 8 6 5 35 35 H 1.07996 * 119.98951 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.91141 * 180.25413 * 11 10 9 37 37 H 1.07999 * 120.00565 * 180.02562 * 14 12 11 38 38 H 0.96997 * 120.00540 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.47304 * 277.37743 * 26 25 5 40 40 H 1.09000 * 109.46974 * 37.37598 * 26 25 5 41 41 H 1.08996 * 109.47528 * 157.37930 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9172 1.9801 0.9246 5 6 3.0844 3.2943 0.5234 6 6 3.9256 4.3144 1.1686 7 8 4.6658 4.0033 2.0825 8 7 3.8763 5.5936 0.7471 9 6 4.7028 6.5574 1.3370 10 6 5.1538 6.3846 2.6376 11 6 5.9733 7.3344 3.2169 12 6 6.3387 8.4662 2.5060 13 9 7.1365 9.3937 3.0792 14 6 5.8890 8.6484 1.2104 15 6 5.0697 7.6967 0.6207 16 8 4.6267 7.8736 -0.6505 17 6 5.0308 8.9896 -1.2897 18 1 5.7267 9.6635 -0.8122 19 6 4.5529 9.2723 -2.5600 20 7 3.7054 8.4512 -3.1419 21 14 5.1134 10.8183 -3.4461 22 1 6.5881 10.7838 -3.6170 23 1 4.4626 10.8884 -4.7791 24 1 4.7354 12.0116 -2.6469 25 7 2.3128 3.4539 -0.5925 26 6 2.1877 4.6942 -1.3621 27 7 1.7185 2.3490 -0.8675 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3745 1.4910 1.7720 34 1 3.2680 5.8466 0.0351 35 1 4.8668 5.5060 3.1962 36 1 6.3268 7.1962 4.2281 37 1 6.1757 9.5313 0.6584 38 1 3.3708 8.6492 -4.0306 39 1 1.4540 5.3448 -0.8861 40 1 3.1530 5.1992 -1.3967 41 1 1.8629 4.4613 -2.3762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820896552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:50 Heat of formation + Delta-G solvation = 4.732350 kcal Electronic energy + Delta-G solvation = -28142.364172 eV Core-core repulsion = 23939.966822 eV Total energy + Delta-G solvation = -4202.397351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -48.33529 -42.56068 -40.15708 -38.61012 -36.41656 -35.20978 -34.17110 -32.52893 -31.79142 -30.98409 -29.50082 -28.35748 -27.02026 -25.65067 -23.75170 -23.46734 -22.34642 -21.34141 -21.03089 -19.46141 -18.48249 -17.97353 -17.35008 -16.83728 -16.32932 -15.94133 -15.34040 -15.24951 -15.01112 -14.74999 -14.49794 -14.35237 -14.22196 -13.98985 -13.79822 -13.75107 -13.52923 -13.27706 -12.86079 -12.64833 -12.38318 -12.18740 -12.08100 -11.78502 -11.59055 -11.51527 -11.34183 -11.07691 -10.87793 -10.65997 -10.56624 -9.98992 -9.93735 -9.54236 -9.06912 -9.05859 -8.85020 -8.00444 -7.23475 -6.73588 -4.30229 1.21368 1.83336 2.01044 2.45680 2.58516 3.00964 3.01064 3.03784 3.19446 3.31658 3.75509 4.22797 4.36934 4.60307 4.75324 4.80576 4.84578 4.99373 5.04210 5.14830 5.23117 5.34325 5.42883 5.51463 5.58317 5.63068 5.65418 5.75614 5.83477 5.90284 6.01388 6.04138 6.13269 6.43695 6.51969 6.60212 6.75246 6.78861 6.84625 6.88821 7.06592 7.52590 7.62661 7.71845 8.05606 8.24897 8.73748 9.31385 10.43929 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.003804 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.002960 B = 7358.636452 C = 9829.799925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.017 3.983 4 C -0.156 4.156 5 C -0.037 4.037 6 C 0.585 3.415 7 O -0.517 6.517 8 N -0.648 5.648 9 C 0.054 3.946 10 C -0.058 4.058 11 C -0.226 4.226 12 C 0.131 3.869 13 F -0.150 7.150 14 C -0.256 4.256 15 C 0.157 3.843 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.095 0.905 19 C 0.045 3.955 20 N -0.862 5.862 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 N -0.271 5.271 26 C 0.069 3.931 27 N -0.269 5.269 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.413 0.587 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.274 0.726 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 -9.333 4.275 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.185 4.185 5 C -0.164 4.164 6 C 0.372 3.628 7 O -0.393 6.393 8 N -0.296 5.296 9 C -0.040 4.040 10 C -0.078 4.078 11 C -0.246 4.246 12 C 0.111 3.889 13 F -0.129 7.129 14 C -0.277 4.277 15 C 0.101 3.899 16 O -0.076 6.076 17 C -0.468 4.468 18 H 0.113 0.887 19 C -0.160 4.160 20 N -0.496 5.496 21 Si 0.767 3.233 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 N -0.061 5.061 26 C -0.071 4.071 27 N -0.103 5.103 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.180 0.820 34 H 0.255 0.745 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.899 -9.310 3.480 11.080 hybrid contribution 0.722 1.258 -0.131 1.456 sum -4.176 -8.052 3.349 9.669 Atomic orbital electron populations 1.21714 0.94710 1.01475 1.02498 1.19840 0.96053 0.88434 1.02959 1.21975 1.00662 0.96715 0.94591 1.21988 1.02234 0.91723 1.02537 1.21643 1.03089 0.97408 0.94282 1.16979 0.81717 0.80937 0.83211 1.90733 1.39187 1.80525 1.28828 1.43590 1.40335 1.06791 1.38890 1.16906 1.03257 0.90707 0.93145 1.20982 0.95951 0.99011 0.91885 1.20545 1.07149 0.95604 1.01331 1.17500 0.92306 0.87274 0.91785 1.91419 1.71681 1.64966 1.84804 1.20845 1.07615 1.03841 0.95424 1.18701 0.92912 0.92407 0.85839 1.83859 1.63008 1.41811 1.18905 1.21308 1.27348 0.99318 0.98831 0.88746 1.25253 0.95789 0.99226 0.95707 1.69944 1.28576 1.35856 1.15213 0.85732 0.79163 0.79869 0.78528 1.19339 1.20122 1.19313 1.45818 1.30937 1.09726 1.19600 1.22544 1.05578 0.81035 0.97932 1.73032 1.19408 0.92640 1.25264 0.92440 0.92744 0.92117 0.90546 0.90090 0.81969 0.74545 0.82875 0.85705 0.83762 0.91648 0.88858 0.87254 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.88 37.16 0.37 -0.93 16 2 C -0.03 -0.33 6.51 -27.88 -0.18 -0.51 16 3 C 0.02 0.23 6.49 -82.47 -0.54 -0.31 16 4 C -0.16 -2.22 10.78 -38.98 -0.42 -2.64 16 5 C -0.04 -0.59 6.95 -82.07 -0.57 -1.16 16 6 C 0.58 10.41 7.66 -12.66 -0.10 10.32 16 7 O -0.52 -10.01 13.91 5.23 0.07 -9.93 16 8 N -0.65 -11.85 4.99 -10.77 -0.05 -11.90 16 9 C 0.05 1.09 6.46 -83.47 -0.54 0.55 16 10 C -0.06 -1.09 8.76 -39.42 -0.35 -1.44 16 11 C -0.23 -4.06 10.02 -39.48 -0.40 -4.46 16 12 C 0.13 2.53 7.29 -39.42 -0.29 2.24 16 13 F -0.15 -2.77 17.26 2.25 0.04 -2.73 16 14 C -0.26 -5.37 9.14 -39.36 -0.36 -5.73 16 15 C 0.16 3.47 6.67 -38.93 -0.26 3.21 16 16 O -0.17 -4.23 9.18 0.05 0.00 -4.23 16 17 C -0.39 -9.79 9.48 30.88 0.29 -9.50 16 18 H 0.10 2.23 5.20 -52.48 -0.27 1.95 16 19 C 0.05 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -21.80 13.67 55.48 0.76 -21.04 16 21 Si 0.94 18.81 29.55 -169.99 -5.02 13.79 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 N -0.27 -4.10 3.75 -63.89 -0.24 -4.33 16 26 C 0.07 0.93 9.68 59.84 0.58 1.51 16 27 N -0.27 -4.01 11.87 33.64 0.40 -3.61 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 34 H 0.41 7.17 4.29 -40.82 -0.18 6.99 16 35 H 0.15 2.79 5.62 -52.49 -0.29 2.50 16 36 H 0.12 1.92 8.06 -52.48 -0.42 1.50 16 37 H 0.14 3.00 5.62 -52.49 -0.30 2.71 16 38 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 39 H 0.09 1.12 8.03 -51.93 -0.42 0.71 16 40 H 0.11 1.68 6.16 -51.93 -0.32 1.36 16 41 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -28.35 354.96 -5.84 -34.19 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.29 Total: 12.29 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.85 Total: -7.83 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.86 Total: -40.89 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.35 -5.84 -34.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820896552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.921 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds