Wall clock time and date at job start Tue Mar 31 2020 17:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47200 * 2 1 4 4 C 1.39664 * 126.06807 * 125.01680 * 3 2 1 5 5 C 1.38419 * 105.35890 * 179.97438 * 4 3 2 6 6 C 1.47127 * 126.88958 * 180.02562 * 5 4 3 7 7 O 1.21654 * 120.00008 * 7.18911 * 6 5 4 8 8 N 1.34773 * 120.00274 * 187.18791 * 6 5 4 9 9 C 1.40003 * 120.00247 * 181.71117 * 8 6 5 10 10 C 1.38738 * 120.07377 * 334.05169 * 9 8 6 11 11 C 1.38180 * 120.01312 * 179.77370 * 10 9 8 12 12 C 1.38560 * 120.18089 * 0.50402 * 11 10 9 13 13 F 1.35098 * 119.92091 * 179.77051 * 12 11 10 14 14 C 1.38348 * 120.15682 * 359.74729 * 12 11 10 15 15 C 1.38731 * 119.97805 * 0.02562 * 14 12 11 16 16 O 1.35777 * 120.08613 * 179.97438 * 15 14 12 17 17 C 1.34801 * 116.99820 * 0.65948 * 16 15 14 18 18 H 1.08004 * 120.00539 * 3.80965 * 17 16 15 19 19 C 1.38640 * 120.00057 * 183.81377 * 17 16 15 20 20 N 1.31570 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00483 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46982 * 59.99496 * 21 19 17 23 23 H 1.48494 * 109.47506 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47186 * 300.00044 * 21 19 17 25 25 N 1.36604 * 106.22920 * 359.97438 * 5 4 3 26 26 C 1.46496 * 125.19286 * 180.26593 * 25 5 4 27 27 N 1.28441 * 109.61682 * 359.97438 * 25 5 4 28 28 H 1.09000 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47465 * 300.00324 * 1 2 3 30 30 H 1.09000 * 109.46904 * 59.99891 * 1 2 3 31 31 H 1.09003 * 109.47261 * 240.00134 * 2 1 3 32 32 H 1.09000 * 109.46904 * 120.00109 * 2 1 3 33 33 H 1.08003 * 127.32400 * 0.02562 * 4 3 2 34 34 H 0.97000 * 120.00144 * 1.71387 * 8 6 5 35 35 H 1.07996 * 119.98951 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.91141 * 180.25413 * 11 10 9 37 37 H 1.07999 * 120.00565 * 180.02562 * 14 12 11 38 38 H 0.96997 * 120.00540 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.47304 * 277.37743 * 26 25 5 40 40 H 1.09000 * 109.46974 * 37.37598 * 26 25 5 41 41 H 1.08996 * 109.47528 * 157.37930 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9172 1.9801 0.9246 5 6 3.0844 3.2943 0.5234 6 6 3.9256 4.3144 1.1686 7 8 4.6658 4.0033 2.0825 8 7 3.8763 5.5936 0.7471 9 6 4.7028 6.5574 1.3370 10 6 5.1538 6.3846 2.6376 11 6 5.9733 7.3344 3.2169 12 6 6.3387 8.4662 2.5060 13 9 7.1365 9.3937 3.0792 14 6 5.8890 8.6484 1.2104 15 6 5.0697 7.6967 0.6207 16 8 4.6267 7.8736 -0.6505 17 6 5.0308 8.9896 -1.2897 18 1 5.7267 9.6635 -0.8122 19 6 4.5529 9.2723 -2.5600 20 7 3.7054 8.4512 -3.1419 21 14 5.1134 10.8183 -3.4461 22 1 6.5881 10.7838 -3.6170 23 1 4.4626 10.8884 -4.7791 24 1 4.7354 12.0116 -2.6469 25 7 2.3128 3.4539 -0.5925 26 6 2.1877 4.6942 -1.3621 27 7 1.7185 2.3490 -0.8675 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3745 1.4910 1.7720 34 1 3.2680 5.8466 0.0351 35 1 4.8668 5.5060 3.1962 36 1 6.3268 7.1962 4.2281 37 1 6.1757 9.5313 0.6584 38 1 3.3708 8.6492 -4.0306 39 1 1.4540 5.3448 -0.8861 40 1 3.1530 5.1992 -1.3967 41 1 1.8629 4.4613 -2.3762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820896552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:48 Heat of formation + Delta-G solvation = -10.902868 kcal Electronic energy + Delta-G solvation = -28143.042166 eV Core-core repulsion = 23939.966822 eV Total energy + Delta-G solvation = -4203.075344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.85913 -43.71406 -41.68025 -40.19897 -38.04300 -36.39860 -35.40509 -34.32535 -32.77294 -32.23349 -31.09008 -29.87634 -28.06454 -27.43699 -25.11539 -24.36641 -23.91628 -22.84039 -22.22726 -20.73461 -20.19655 -19.53294 -18.60184 -18.36202 -17.54766 -17.29767 -16.99715 -16.75025 -16.50154 -16.07498 -15.95992 -15.83832 -15.43485 -15.39124 -15.07865 -15.02179 -14.81102 -14.59953 -14.06128 -13.99342 -13.89827 -13.48387 -13.37180 -13.11618 -13.02490 -12.63317 -12.45376 -12.33036 -12.19665 -12.16246 -11.72397 -11.58382 -11.43916 -11.04227 -10.83011 -10.27025 -9.92905 -9.61767 -8.83586 -8.53633 -6.18181 -0.14461 0.33656 0.42434 1.31966 1.37868 1.44896 1.49482 1.50174 1.79103 1.96379 2.12597 2.62414 3.03253 3.07297 3.23794 3.40104 3.41963 3.84985 3.90194 4.05289 4.11819 4.13017 4.28083 4.29654 4.46945 4.49640 4.50533 4.57759 4.70124 4.86692 4.90177 4.96726 5.13743 5.17566 5.23693 5.26011 5.30921 5.38230 5.40132 5.46843 5.68925 5.90758 5.97168 6.18613 6.75050 6.91863 6.97453 7.55754 8.66232 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.003804 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.002960 B = 7358.636452 C = 9829.799925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 C 0.019 3.981 4 C -0.151 4.151 5 C -0.061 4.061 6 C 0.589 3.411 7 O -0.534 6.534 8 N -0.650 5.650 9 C 0.052 3.948 10 C -0.060 4.060 11 C -0.203 4.203 12 C 0.126 3.874 13 F -0.143 7.143 14 C -0.263 4.263 15 C 0.134 3.866 16 O -0.201 6.201 17 C -0.418 4.418 18 H 0.099 0.901 19 C -0.002 4.002 20 N -0.897 5.897 21 Si 1.007 2.993 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.261 1.261 25 N -0.276 5.276 26 C 0.071 3.929 27 N -0.282 5.282 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.181 0.819 34 H 0.415 0.585 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.140 0.860 38 H 0.276 0.724 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -10.374 5.391 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.180 4.180 5 C -0.188 4.188 6 C 0.377 3.623 7 O -0.411 6.411 8 N -0.298 5.298 9 C -0.043 4.043 10 C -0.080 4.080 11 C -0.222 4.222 12 C 0.106 3.894 13 F -0.122 7.122 14 C -0.283 4.283 15 C 0.080 3.920 16 O -0.106 6.106 17 C -0.493 4.493 18 H 0.116 0.884 19 C -0.202 4.202 20 N -0.533 5.533 21 Si 0.827 3.173 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.186 1.186 25 N -0.065 5.065 26 C -0.069 4.069 27 N -0.116 5.116 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.198 0.802 34 H 0.258 0.742 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.835 -10.359 4.624 12.331 hybrid contribution 0.721 1.434 -0.283 1.630 sum -4.114 -8.925 4.341 10.743 Atomic orbital electron populations 1.21686 0.94144 1.02728 1.01491 1.20051 0.96468 0.86173 1.04619 1.22632 0.99692 0.97949 0.93446 1.22347 1.01779 0.90971 1.02904 1.21567 1.04156 0.97729 0.95326 1.17184 0.81473 0.80824 0.82831 1.90698 1.40013 1.80765 1.29657 1.43666 1.40199 1.06906 1.39013 1.17175 1.03002 0.90477 0.93602 1.21186 0.95965 0.99537 0.91307 1.20925 1.04946 0.93977 1.02391 1.17502 0.92599 0.87947 0.91312 1.91437 1.71427 1.64805 1.84514 1.20931 1.07527 1.03570 0.96308 1.19019 0.93739 0.93543 0.85715 1.83846 1.64443 1.42213 1.20086 1.21672 1.28161 0.99886 0.99614 0.88367 1.26248 0.95798 1.02092 0.96102 1.70042 1.29997 1.37607 1.15687 0.84792 0.78772 0.76261 0.77442 1.18902 1.19460 1.18576 1.45897 1.31027 1.10095 1.19512 1.22534 1.04687 0.80904 0.98771 1.73051 1.19715 0.92873 1.25945 0.90075 0.93294 0.93573 0.89556 0.87720 0.80165 0.74235 0.81872 0.82235 0.84275 0.91471 0.87726 0.89356 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.88 71.98 0.71 -1.50 16 2 C -0.03 -0.57 6.51 29.85 0.19 -0.38 16 3 C 0.02 0.48 6.49 43.05 0.28 0.76 16 4 C -0.15 -4.08 10.78 22.66 0.24 -3.84 16 5 C -0.06 -1.94 6.95 40.78 0.28 -1.65 16 6 C 0.59 20.96 7.66 86.58 0.66 21.62 16 7 O -0.53 -20.29 13.91 -4.20 -0.06 -20.35 16 8 N -0.65 -24.24 4.99 -306.23 -1.53 -25.77 16 9 C 0.05 2.11 6.46 38.26 0.25 2.36 16 10 C -0.06 -2.17 8.76 22.38 0.20 -1.97 16 11 C -0.20 -6.80 10.02 22.33 0.22 -6.58 16 12 C 0.13 4.70 7.29 22.37 0.16 4.86 16 13 F -0.14 -5.03 17.26 44.97 0.78 -4.26 16 14 C -0.26 -11.08 9.14 22.41 0.20 -10.88 16 15 C 0.13 6.03 6.67 22.69 0.15 6.18 16 16 O -0.20 -10.26 9.18 -22.75 -0.21 -10.47 16 17 C -0.42 -21.55 9.48 67.92 0.64 -20.91 16 18 H 0.10 4.78 5.20 -2.91 -0.02 4.77 16 19 C 0.00 -0.08 5.49 84.83 0.47 0.38 16 20 N -0.90 -46.85 13.67 21.61 0.30 -46.55 16 21 Si 1.01 38.91 29.55 68.60 2.03 40.94 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 N -0.28 -8.33 3.75 -356.05 -1.33 -9.66 16 26 C 0.07 1.98 9.68 127.77 1.24 3.22 16 27 N -0.28 -8.19 11.87 -47.50 -0.56 -8.75 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 33 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.42 15.06 4.29 -92.71 -0.40 14.66 16 35 H 0.16 5.67 5.62 -2.91 -0.02 5.65 16 36 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 37 H 0.14 5.93 5.62 -2.91 -0.02 5.91 16 38 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 39 H 0.10 2.62 8.03 -2.38 -0.02 2.60 16 40 H 0.09 2.89 6.16 -2.39 -0.01 2.87 16 41 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -61.32 354.96 6.02 -55.30 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: 0.71 Total: 37.88 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.91 Total: -8.31 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.13 Total: -90.73 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.27 Total: -30.82 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.78 Total: -4.26 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -61.32 6.02 -55.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820896552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.397 kcal (2) G-P(sol) polarization free energy of solvation -61.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds