Wall clock time and date at job start Tue Mar 31 2020 18:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47523 * 2 1 4 4 O 1.42898 * 109.47125 * 120.00782 * 2 1 3 5 5 C 1.42907 * 113.99644 * 269.99806 * 4 2 1 6 6 C 1.50700 * 109.46863 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.97293 * 269.72470 * 6 5 4 8 8 C 1.38202 * 120.02364 * 179.72989 * 7 6 5 9 9 C 1.38460 * 119.97523 * 0.56912 * 8 7 6 10 10 F 1.35093 * 120.02939 * 179.68487 * 9 8 7 11 11 C 1.38465 * 119.94626 * 359.70445 * 9 8 7 12 12 C 1.38196 * 119.97274 * 0.02562 * 11 9 8 13 13 C 1.50706 * 109.47123 * 240.00515 * 2 1 3 14 14 O 1.21311 * 119.99665 * 245.00426 * 13 2 1 15 15 N 1.34768 * 120.00008 * 65.00112 * 13 2 1 16 16 C 1.40598 * 119.99945 * 180.02562 * 15 13 2 17 17 C 1.40655 * 126.08235 * 0.02740 * 16 15 13 18 18 N 1.30901 * 108.39020 * 179.73760 * 17 16 15 19 19 N 1.40072 * 108.40394 * 359.97438 * 18 17 16 20 20 C 1.37326 * 126.06741 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00334 * 179.97438 * 20 19 18 22 22 C 1.38988 * 120.00010 * 359.97438 * 20 19 18 23 23 N 1.31289 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99913 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47194 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46943 * 120.00302 * 24 22 20 27 27 H 1.48494 * 109.46846 * 240.00178 * 24 22 20 28 28 C 1.35682 * 126.08314 * 179.71162 * 16 15 13 29 29 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47247 * 299.99621 * 1 2 3 31 31 H 1.09003 * 109.47008 * 59.99414 * 1 2 3 32 32 H 1.09006 * 109.46775 * 299.99750 * 5 4 2 33 33 H 1.09000 * 109.47010 * 59.99934 * 5 4 2 34 34 H 1.08001 * 119.98949 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.01072 * 180.25269 * 8 7 6 36 36 H 1.08002 * 120.01212 * 179.97438 * 11 9 8 37 37 H 1.08006 * 119.98409 * 180.02562 * 12 11 9 38 38 H 0.96997 * 120.00261 * 359.97438 * 15 13 2 39 39 H 1.08001 * 125.80435 * 359.69530 * 17 16 15 40 40 H 0.97005 * 119.99703 * 179.97438 * 23 22 20 41 41 H 1.07993 * 126.24427 * 0.24617 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6738 1.1667 5 6 2.2000 0.1827 2.2941 6 6 2.7002 -0.6287 3.4613 7 6 1.8003 -1.1951 4.3448 8 6 2.2577 -1.9441 5.4124 9 6 3.6180 -2.1174 5.6036 10 9 4.0664 -2.8441 6.6505 11 6 4.5185 -1.5450 4.7212 12 6 4.0586 -0.8010 3.6512 13 6 2.0323 -0.7103 -1.2306 14 8 2.6530 -1.7469 -1.1216 15 7 1.7919 -0.1940 -2.4520 16 6 2.2601 -0.8570 -3.6001 17 6 2.9881 -2.0602 -3.6228 18 7 3.2403 -2.3668 -4.8701 19 7 2.6851 -1.3761 -5.6900 20 6 2.7368 -1.3392 -7.0618 21 1 2.2725 -0.5248 -7.5981 22 6 3.3867 -2.3500 -7.7601 23 7 3.9507 -3.3403 -7.1083 24 14 3.4565 -2.3002 -9.6262 25 1 2.7497 -1.0895 -10.1159 26 1 4.8737 -2.2581 -10.0676 27 1 2.8019 -3.5133 -10.1785 28 6 2.0848 -0.4530 -4.8834 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.9320 0.9511 2.0450 33 1 1.2537 0.6545 2.5589 34 1 0.7394 -1.0554 4.1986 35 1 1.5544 -2.3899 6.1003 36 1 5.5798 -1.6791 4.8695 37 1 4.7608 -0.3547 2.9625 38 1 1.2952 0.6346 -2.5391 39 1 3.2887 -2.6333 -2.7581 40 1 4.4040 -4.0460 -7.5958 41 1 1.5646 0.4361 -5.2076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822883805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:35 Heat of formation + Delta-G solvation = -12.694738 kcal Electronic energy + Delta-G solvation = -26708.662866 eV Core-core repulsion = 22505.509820 eV Total energy + Delta-G solvation = -4203.153046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.15340 -40.08810 -39.56814 -38.84158 -37.28591 -34.20486 -33.25474 -32.40429 -31.43736 -30.79967 -30.15108 -27.69331 -26.24214 -25.09517 -23.82098 -23.35115 -21.77102 -21.03168 -20.27736 -19.37897 -17.99198 -17.59913 -17.05815 -16.88017 -16.69103 -15.84134 -15.77674 -15.44475 -15.35764 -14.94543 -14.59702 -14.40896 -14.04916 -13.83557 -13.59975 -13.51413 -13.18381 -13.06210 -12.89388 -12.53043 -12.43932 -12.35699 -11.78655 -11.66392 -11.44091 -11.30779 -11.27394 -11.21244 -10.90670 -10.50793 -10.15428 -9.95456 -9.38991 -9.16387 -9.04892 -8.90377 -8.77704 -8.04809 -6.69496 -6.54900 -4.22051 0.76081 0.95477 2.82167 2.94000 3.03076 3.05832 3.11401 3.43321 3.68113 3.82970 3.97151 4.05711 4.38018 4.41688 4.52834 4.62016 4.70403 4.76868 4.83701 4.92460 5.00384 5.03689 5.11227 5.14883 5.26109 5.44769 5.56781 5.61035 5.67776 5.82113 5.92616 5.98609 6.20858 6.24375 6.45503 6.57700 6.84590 6.94814 6.98612 7.16168 7.25588 7.87137 8.18956 8.28816 8.64894 8.87092 9.39005 9.68328 10.41165 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.001943 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.705611 B =14409.283194 C =15232.125076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.083 0.917 4 O -0.347 6.347 5 C 0.100 3.900 6 C -0.097 4.097 7 C -0.068 4.068 8 C -0.158 4.158 9 C 0.102 3.898 10 F -0.141 7.141 11 C -0.156 4.156 12 C -0.065 4.065 13 C 0.498 3.502 14 O -0.514 6.514 15 N -0.623 5.623 16 C -0.059 4.059 17 C -0.033 4.033 18 N -0.260 5.260 19 N -0.143 5.143 20 C -0.323 4.323 21 H 0.117 0.883 22 C 0.045 3.955 23 N -0.769 5.769 24 Si 0.935 3.065 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.084 4.084 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.396 0.604 39 H 0.176 0.824 40 H 0.274 0.726 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 10.329 19.767 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.101 0.899 4 O -0.265 6.265 5 C 0.023 3.977 6 C -0.098 4.098 7 C -0.086 4.086 8 C -0.177 4.177 9 C 0.082 3.918 10 F -0.119 7.119 11 C -0.175 4.175 12 C -0.083 4.083 13 C 0.282 3.718 14 O -0.388 6.388 15 N -0.267 5.267 16 C -0.164 4.164 17 C -0.209 4.209 18 N -0.091 5.091 19 N 0.089 4.911 20 C -0.455 4.455 21 H 0.134 0.866 22 C -0.172 4.172 23 N -0.396 5.396 24 Si 0.759 3.241 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.235 4.235 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.229 0.771 39 H 0.192 0.808 40 H 0.085 0.915 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.364 8.282 19.081 21.254 hybrid contribution -0.632 1.218 -0.111 1.377 sum -4.996 9.500 18.970 21.796 Atomic orbital electron populations 1.22238 0.93765 1.04006 1.02776 1.21859 0.94866 0.96090 0.85792 0.89888 1.88161 1.86555 1.33443 1.18371 1.21389 0.99778 0.91689 0.84799 1.19626 0.93531 1.00585 0.96028 1.20926 1.00032 0.94774 0.92899 1.21127 0.93831 1.02226 1.00512 1.17781 0.92833 0.94661 0.86477 1.91500 1.89933 1.75268 1.55238 1.21164 1.00211 1.00311 0.95807 1.20989 0.95220 0.96205 0.95877 1.20051 0.81769 0.86335 0.83635 1.90630 1.39493 1.23027 1.85673 1.42397 1.54793 1.25599 1.03915 1.17248 1.14630 0.99968 0.84564 1.24125 1.03567 0.96748 0.96429 1.78262 1.21188 1.10986 0.98680 1.44559 1.29230 1.12157 1.05152 1.19909 1.37680 1.10954 0.76991 0.86586 1.25650 0.95342 0.94880 1.01305 1.70229 1.25351 1.07739 1.36289 0.85766 0.78675 0.79032 0.80675 1.18706 1.19932 1.19924 1.21237 1.12538 1.00362 0.89322 0.90911 0.91567 0.90843 0.92021 0.92084 0.84797 0.84601 0.84502 0.84628 0.77139 0.80758 0.91512 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.48 37.15 0.35 -1.24 16 2 C 0.08 0.91 3.13 -27.88 -0.09 0.82 16 3 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 4 O -0.35 -4.67 9.51 -55.09 -0.52 -5.20 16 5 C 0.10 0.92 5.87 36.01 0.21 1.13 16 6 C -0.10 -0.96 5.51 -104.62 -0.58 -1.53 16 7 C -0.07 -0.60 9.70 -39.59 -0.38 -0.99 16 8 C -0.16 -1.42 10.03 -39.51 -0.40 -1.82 16 9 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 10 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 11 C -0.16 -1.50 10.03 -39.51 -0.40 -1.89 16 12 C -0.06 -0.63 9.70 -39.59 -0.38 -1.02 16 13 C 0.50 8.74 7.15 -10.99 -0.08 8.66 16 14 O -0.51 -11.59 13.66 -14.33 -0.20 -11.79 16 15 N -0.62 -10.76 5.43 -9.99 -0.05 -10.82 16 16 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 17 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 18 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 19 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 20 C -0.32 -8.55 10.25 -14.81 -0.15 -8.70 16 21 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 22 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 23 N -0.77 -21.66 11.81 55.49 0.66 -21.00 16 24 Si 0.93 18.94 29.55 -169.99 -5.02 13.92 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 33 H 0.06 0.41 7.81 -51.93 -0.41 0.01 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.40 5.03 8.61 -40.82 -0.35 4.68 16 39 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -35.75 364.08 -7.36 -43.11 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.79 Total: 8.97 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.23 Total: -9.89 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.88 Total: -43.12 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.72 Total: -16.99 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.75 -7.36 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822883805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.413 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds