Wall clock time and date at job start Tue Mar 31 2020 18:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47523 * 2 1 4 4 O 1.42898 * 109.47125 * 120.00782 * 2 1 3 5 5 C 1.42907 * 113.99644 * 269.99806 * 4 2 1 6 6 C 1.50700 * 109.46863 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.97293 * 269.72470 * 6 5 4 8 8 C 1.38202 * 120.02364 * 179.72989 * 7 6 5 9 9 C 1.38460 * 119.97523 * 0.56912 * 8 7 6 10 10 F 1.35093 * 120.02939 * 179.68487 * 9 8 7 11 11 C 1.38465 * 119.94626 * 359.70445 * 9 8 7 12 12 C 1.38196 * 119.97274 * 0.02562 * 11 9 8 13 13 C 1.50706 * 109.47123 * 240.00515 * 2 1 3 14 14 O 1.21311 * 119.99665 * 245.00426 * 13 2 1 15 15 N 1.34768 * 120.00008 * 65.00112 * 13 2 1 16 16 C 1.40598 * 119.99945 * 180.02562 * 15 13 2 17 17 C 1.40655 * 126.08235 * 0.02740 * 16 15 13 18 18 N 1.30901 * 108.39020 * 179.73760 * 17 16 15 19 19 N 1.40072 * 108.40394 * 359.97438 * 18 17 16 20 20 C 1.37326 * 126.06741 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00334 * 179.97438 * 20 19 18 22 22 C 1.38988 * 120.00010 * 359.97438 * 20 19 18 23 23 N 1.31289 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99913 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47194 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46943 * 120.00302 * 24 22 20 27 27 H 1.48494 * 109.46846 * 240.00178 * 24 22 20 28 28 C 1.35682 * 126.08314 * 179.71162 * 16 15 13 29 29 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47247 * 299.99621 * 1 2 3 31 31 H 1.09003 * 109.47008 * 59.99414 * 1 2 3 32 32 H 1.09006 * 109.46775 * 299.99750 * 5 4 2 33 33 H 1.09000 * 109.47010 * 59.99934 * 5 4 2 34 34 H 1.08001 * 119.98949 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.01072 * 180.25269 * 8 7 6 36 36 H 1.08002 * 120.01212 * 179.97438 * 11 9 8 37 37 H 1.08006 * 119.98409 * 180.02562 * 12 11 9 38 38 H 0.96997 * 120.00261 * 359.97438 * 15 13 2 39 39 H 1.08001 * 125.80435 * 359.69530 * 17 16 15 40 40 H 0.97005 * 119.99703 * 179.97438 * 23 22 20 41 41 H 1.07993 * 126.24427 * 0.24617 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6738 1.1667 5 6 2.2000 0.1827 2.2941 6 6 2.7002 -0.6287 3.4613 7 6 1.8003 -1.1951 4.3448 8 6 2.2577 -1.9441 5.4124 9 6 3.6180 -2.1174 5.6036 10 9 4.0664 -2.8441 6.6505 11 6 4.5185 -1.5450 4.7212 12 6 4.0586 -0.8010 3.6512 13 6 2.0323 -0.7103 -1.2306 14 8 2.6530 -1.7469 -1.1216 15 7 1.7919 -0.1940 -2.4520 16 6 2.2601 -0.8570 -3.6001 17 6 2.9881 -2.0602 -3.6228 18 7 3.2403 -2.3668 -4.8701 19 7 2.6851 -1.3761 -5.6900 20 6 2.7368 -1.3392 -7.0618 21 1 2.2725 -0.5248 -7.5981 22 6 3.3867 -2.3500 -7.7601 23 7 3.9507 -3.3403 -7.1083 24 14 3.4565 -2.3002 -9.6262 25 1 2.7497 -1.0895 -10.1159 26 1 4.8737 -2.2581 -10.0676 27 1 2.8019 -3.5133 -10.1785 28 6 2.0848 -0.4530 -4.8834 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.9320 0.9511 2.0450 33 1 1.2537 0.6545 2.5589 34 1 0.7394 -1.0554 4.1986 35 1 1.5544 -2.3899 6.1003 36 1 5.5798 -1.6791 4.8695 37 1 4.7608 -0.3547 2.9625 38 1 1.2952 0.6346 -2.5391 39 1 3.2887 -2.6333 -2.7581 40 1 4.4040 -4.0460 -7.5958 41 1 1.5646 0.4361 -5.2076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822883805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:34 Heat of formation + Delta-G solvation = -35.935116 kcal Electronic energy + Delta-G solvation = -26709.670644 eV Core-core repulsion = 22505.509820 eV Total energy + Delta-G solvation = -4204.160824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.94731 -41.73142 -40.64884 -40.05490 -38.35184 -35.90380 -35.01460 -33.28984 -32.24012 -32.12389 -31.57362 -29.45843 -27.05613 -26.80471 -25.00173 -24.04684 -22.86273 -22.48291 -21.79507 -21.13117 -19.32624 -18.71405 -18.28367 -17.89446 -17.48325 -17.39751 -16.69527 -16.65889 -16.57450 -16.27288 -15.78561 -15.61483 -15.30689 -15.04311 -14.83420 -14.72729 -14.48827 -14.22816 -13.95360 -13.51121 -13.38166 -13.24781 -13.23497 -13.06888 -12.92759 -12.82760 -12.53601 -12.03808 -12.01873 -11.97551 -11.83797 -11.01681 -10.87485 -10.79955 -10.34268 -10.09326 -10.08315 -9.67795 -8.51218 -8.45972 -6.23264 0.02240 0.26115 1.22654 1.40539 1.53240 1.59795 1.87563 1.89332 2.17058 2.51719 2.53345 2.89631 3.10380 3.18366 3.25633 3.72672 3.75957 3.88349 3.96734 4.02225 4.15552 4.23222 4.28174 4.45907 4.49821 4.61485 4.61612 4.78565 4.88688 4.95543 4.98559 5.01855 5.09899 5.12447 5.22345 5.28701 5.31039 5.48876 5.51431 5.88162 5.97274 6.13951 6.34479 6.75027 6.80563 7.43458 7.49777 7.70027 8.53725 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.001943 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.705611 B =14409.283194 C =15232.125076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 H 0.125 0.875 4 O -0.384 6.384 5 C 0.096 3.904 6 C -0.111 4.111 7 C -0.070 4.070 8 C -0.161 4.161 9 C 0.081 3.919 10 F -0.149 7.149 11 C -0.166 4.166 12 C -0.079 4.079 13 C 0.491 3.509 14 O -0.571 6.571 15 N -0.611 5.611 16 C -0.043 4.043 17 C -0.064 4.064 18 N -0.312 5.312 19 N -0.169 5.169 20 C -0.352 4.352 21 H 0.143 0.857 22 C -0.010 4.010 23 N -0.827 5.827 24 Si 1.020 2.980 25 H -0.238 1.238 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.077 4.077 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.422 0.578 39 H 0.161 0.839 40 H 0.275 0.725 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 13.579 19.608 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.143 0.857 4 O -0.303 6.303 5 C 0.021 3.979 6 C -0.111 4.111 7 C -0.088 4.088 8 C -0.179 4.179 9 C 0.062 3.938 10 F -0.128 7.128 11 C -0.184 4.184 12 C -0.097 4.097 13 C 0.278 3.722 14 O -0.449 6.449 15 N -0.258 5.258 16 C -0.149 4.149 17 C -0.239 4.239 18 N -0.144 5.144 19 N 0.061 4.939 20 C -0.483 4.483 21 H 0.161 0.839 22 C -0.221 4.221 23 N -0.455 5.455 24 Si 0.839 3.161 25 H -0.161 1.161 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.227 4.227 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.260 0.740 39 H 0.178 0.822 40 H 0.085 0.915 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.633 11.603 18.962 23.199 hybrid contribution 0.037 0.253 0.123 0.284 sum -6.596 11.856 19.085 23.416 Atomic orbital electron populations 1.22258 0.91296 1.03249 1.05445 1.21895 0.96352 0.96552 0.82636 0.85718 1.88120 1.86999 1.35604 1.19584 1.21638 1.01900 0.91251 0.83134 1.19906 0.93643 1.00923 0.96625 1.21239 1.01191 0.94021 0.92302 1.21408 0.93637 1.01981 1.00920 1.18052 0.93694 0.95338 0.86710 1.91474 1.90107 1.75568 1.55621 1.21346 1.00869 1.00341 0.95867 1.21194 0.95861 0.96536 0.96087 1.21342 0.80071 0.85677 0.85094 1.90615 1.41891 1.25826 1.86604 1.42334 1.54760 1.26238 1.02435 1.17328 1.12493 0.98500 0.86554 1.24124 1.05410 0.98773 0.95571 1.78156 1.23142 1.13174 0.99938 1.44862 1.30361 1.12785 1.05849 1.20673 1.38370 1.12170 0.77104 0.83922 1.26917 0.94167 0.93916 1.07083 1.70419 1.27189 1.09097 1.38805 0.84525 0.78664 0.79765 0.73164 1.16072 1.19908 1.19926 1.22024 1.11141 1.00686 0.88872 0.93384 0.88099 0.88988 0.90594 0.88806 0.82378 0.82788 0.83596 0.84035 0.74009 0.82170 0.91498 0.79078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.09 1.81 3.13 29.85 0.09 1.90 16 3 H 0.13 1.59 7.79 -2.39 -0.02 1.57 16 4 O -0.38 -9.53 9.51 -129.99 -1.24 -10.76 16 5 C 0.10 1.47 5.87 71.24 0.42 1.89 16 6 C -0.11 -1.99 5.51 -19.86 -0.11 -2.10 16 7 C -0.07 -1.09 9.70 22.26 0.22 -0.88 16 8 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 9 C 0.08 1.64 7.30 22.38 0.16 1.80 16 10 F -0.15 -3.25 17.27 44.97 0.78 -2.47 16 11 C -0.17 -3.20 10.03 22.31 0.22 -2.98 16 12 C -0.08 -1.50 9.70 22.26 0.22 -1.28 16 13 C 0.49 16.70 7.15 87.66 0.63 17.32 16 14 O -0.57 -26.53 13.66 15.86 0.22 -26.32 16 15 N -0.61 -19.89 5.43 -303.91 -1.65 -21.54 16 16 C -0.04 -1.94 6.90 37.73 0.26 -1.68 16 17 C -0.06 -3.55 10.85 85.42 0.93 -2.63 16 18 N -0.31 -19.16 10.40 -56.47 -0.59 -19.75 16 19 N -0.17 -9.41 3.74 -190.01 -0.71 -10.12 16 20 C -0.35 -18.59 10.25 84.01 0.86 -17.73 16 21 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 22 C -0.01 -0.50 5.50 84.95 0.47 -0.04 16 23 N -0.83 -48.44 11.81 21.66 0.26 -48.18 16 24 Si 1.02 38.68 29.55 68.60 2.03 40.70 16 25 H -0.24 -7.97 7.11 99.48 0.71 -7.26 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 27 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 28 C -0.08 -3.49 11.49 83.38 0.96 -2.53 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.84 7.87 -2.39 -0.02 0.82 16 31 H 0.09 1.02 7.92 -2.39 -0.02 1.00 16 32 H 0.08 0.93 8.03 -2.38 -0.02 0.91 16 33 H 0.09 0.81 7.81 -2.39 -0.02 0.79 16 34 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.42 9.09 8.61 -92.71 -0.80 8.30 16 39 H 0.16 9.26 5.92 -2.91 -0.02 9.24 16 40 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 41 H 0.19 6.60 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -84.78 364.08 5.60 -79.18 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.28 Total: 32.42 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 6.23 Total: -13.16 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -2.69 Total: -99.59 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.02 Total: -37.08 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.70 kcal Total: -84.78 5.60 -79.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822883805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.244 kcal (2) G-P(sol) polarization free energy of solvation -84.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds