Wall clock time and date at job start Tue Mar 31 2020 18:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46664 * 2 1 4 4 O 1.42892 * 109.47300 * 239.99589 * 2 1 3 5 5 C 1.42901 * 114.00443 * 90.00006 * 4 2 1 6 6 C 1.50694 * 109.47506 * 179.97438 * 5 4 2 7 7 C 1.38250 * 119.97658 * 269.73159 * 6 5 4 8 8 C 1.38194 * 120.02481 * 179.73042 * 7 6 5 9 9 C 1.38463 * 119.97539 * 0.55499 * 8 7 6 10 10 F 1.35093 * 120.02544 * 179.68537 * 9 8 7 11 11 C 1.38463 * 119.94663 * 359.71348 * 9 8 7 12 12 C 1.38195 * 119.97418 * 359.97438 * 11 9 8 13 13 C 1.50704 * 109.46720 * 119.99075 * 2 1 3 14 14 O 1.21308 * 119.99173 * 115.00846 * 13 2 1 15 15 N 1.34769 * 120.00349 * 295.00283 * 13 2 1 16 16 C 1.40597 * 119.99949 * 180.02562 * 15 13 2 17 17 C 1.40648 * 126.08176 * 0.04729 * 16 15 13 18 18 N 1.30907 * 108.38298 * 179.70387 * 17 16 15 19 19 N 1.40067 * 108.41113 * 0.40226 * 18 17 16 20 20 C 1.37320 * 126.07294 * 179.85605 * 19 18 17 21 21 H 1.08002 * 120.00430 * 179.69232 * 20 19 18 22 22 C 1.38992 * 119.99664 * 359.41108 * 20 19 18 23 23 N 1.31294 * 120.00157 * 0.27652 * 22 20 19 24 24 Si 1.86803 * 119.99838 * 180.27798 * 22 20 19 25 25 H 1.48504 * 109.47034 * 59.99910 * 24 22 20 26 26 H 1.48498 * 109.47326 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 299.99983 * 24 22 20 28 28 C 1.35688 * 126.08014 * 179.97438 * 16 15 13 29 29 H 1.08996 * 109.47108 * 300.00409 * 1 2 3 30 30 H 1.09006 * 109.46861 * 60.00702 * 1 2 3 31 31 H 1.08996 * 109.47009 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46918 * 300.00280 * 5 4 2 33 33 H 1.09009 * 109.46649 * 59.99659 * 5 4 2 34 34 H 1.08002 * 119.98220 * 359.97146 * 7 6 5 35 35 H 1.08001 * 120.01494 * 180.25466 * 8 7 6 36 36 H 1.07998 * 120.01136 * 179.97438 * 11 9 8 37 37 H 1.07997 * 119.98691 * 179.97438 * 12 11 9 38 38 H 0.97002 * 120.00333 * 359.97438 * 15 13 2 39 39 H 1.07999 * 125.80726 * 359.95383 * 17 16 15 40 40 H 0.97005 * 119.99961 * 179.97438 * 23 22 20 41 41 H 1.07996 * 126.24199 * 0.07665 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.2002 0.1827 -2.2941 6 6 2.7016 -0.6285 -3.4609 7 6 4.0604 -0.7956 -3.6529 8 6 4.5212 -1.5439 -4.7194 9 6 3.6217 -2.1169 -5.6024 10 9 4.0712 -2.8433 -6.6490 11 6 2.2611 -1.9441 -5.4123 12 6 1.8025 -1.2008 -4.3414 13 6 2.0323 -0.7102 1.2306 14 8 2.6531 -1.7467 1.1217 15 7 1.7918 -0.1939 2.4521 16 6 2.2609 -0.8563 3.6001 17 6 2.9912 -2.0581 3.6227 18 7 3.2538 -2.3582 4.8696 19 7 2.6960 -1.3691 5.6895 20 6 2.7534 -1.3286 7.0609 21 1 2.2910 -0.5130 7.5970 22 6 3.4017 -2.3404 7.7595 23 7 3.9638 -3.3320 7.1078 24 14 3.4731 -2.2895 9.6254 25 1 2.0932 -2.3019 10.1741 26 1 4.2157 -3.4745 10.1249 27 1 4.1678 -1.0512 10.0605 28 6 2.0907 -0.4491 4.8832 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.2540 0.6544 -2.5589 33 1 2.9321 0.9512 -2.0450 34 1 4.7620 -0.3444 -2.9668 35 1 5.5827 -1.6778 -4.8669 36 1 1.5585 -2.3902 -6.1006 37 1 0.7413 -1.0656 -4.1931 38 1 1.2957 0.6351 2.5391 39 1 3.2885 -2.6332 2.7582 40 1 4.4165 -4.0380 7.5953 41 1 1.5705 0.4401 5.2072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822883806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:39 Heat of formation + Delta-G solvation = -12.582644 kcal Electronic energy + Delta-G solvation = -26708.790979 eV Core-core repulsion = 22505.642794 eV Total energy + Delta-G solvation = -4203.148185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.15297 -40.08699 -39.56749 -38.84057 -37.28578 -34.20348 -33.25273 -32.40360 -31.43765 -30.79880 -30.14955 -27.69053 -26.24202 -25.09262 -23.81990 -23.35046 -21.77076 -21.03044 -20.27533 -19.37770 -17.99172 -17.59720 -17.05637 -16.87840 -16.69334 -15.84064 -15.77568 -15.43395 -15.35715 -14.94550 -14.59698 -14.40784 -14.05652 -13.83547 -13.60602 -13.51290 -13.18467 -13.05993 -12.88323 -12.53147 -12.43712 -12.35633 -11.78398 -11.65608 -11.43907 -11.30616 -11.24416 -11.20754 -10.93072 -10.55603 -10.14394 -9.95315 -9.38982 -9.15062 -9.04845 -8.90247 -8.77430 -8.04646 -6.69348 -6.54422 -4.21835 0.76087 0.95535 2.82904 2.94041 3.04371 3.05652 3.09406 3.43463 3.68145 3.83535 3.97179 4.05833 4.38051 4.41721 4.52995 4.62101 4.70500 4.76932 4.83746 4.92510 5.00497 5.03859 5.11303 5.14978 5.26155 5.44861 5.56827 5.61083 5.67815 5.82157 5.92644 5.98653 6.20887 6.24508 6.45603 6.57734 6.84637 6.94537 6.98755 7.16339 7.25785 7.86958 8.19106 8.28980 8.65049 8.87226 9.39098 9.68495 10.41490 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.001943 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.254355 B =14405.155924 C =15229.187585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 H 0.083 0.917 4 O -0.347 6.347 5 C 0.100 3.900 6 C -0.097 4.097 7 C -0.065 4.065 8 C -0.156 4.156 9 C 0.102 3.898 10 F -0.141 7.141 11 C -0.158 4.158 12 C -0.068 4.068 13 C 0.498 3.502 14 O -0.514 6.514 15 N -0.623 5.623 16 C -0.059 4.059 17 C -0.033 4.033 18 N -0.260 5.260 19 N -0.143 5.143 20 C -0.324 4.324 21 H 0.116 0.884 22 C 0.046 3.954 23 N -0.770 5.770 24 Si 0.935 3.065 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.084 4.084 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.396 0.604 39 H 0.176 0.824 40 H 0.275 0.725 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 10.279 -19.747 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.101 0.899 4 O -0.265 6.265 5 C 0.023 3.977 6 C -0.098 4.098 7 C -0.083 4.083 8 C -0.175 4.175 9 C 0.082 3.918 10 F -0.119 7.119 11 C -0.177 4.177 12 C -0.086 4.086 13 C 0.282 3.718 14 O -0.388 6.388 15 N -0.267 5.267 16 C -0.164 4.164 17 C -0.209 4.209 18 N -0.091 5.091 19 N 0.090 4.910 20 C -0.456 4.456 21 H 0.133 0.867 22 C -0.171 4.171 23 N -0.396 5.396 24 Si 0.758 3.242 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 C -0.235 4.235 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.229 0.771 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.366 8.228 -19.063 21.217 hybrid contribution -0.648 1.228 0.117 1.393 sum -5.014 9.456 -18.946 21.760 Atomic orbital electron populations 1.22240 0.93767 1.04005 1.02774 1.21859 0.94864 0.96090 0.85793 0.89891 1.88158 1.86553 1.33449 1.18370 1.21385 0.99773 0.91692 0.84802 1.19628 0.93530 1.00558 0.96059 1.20990 0.95203 0.96198 0.95902 1.21162 1.00218 1.00257 0.95852 1.17782 0.92825 0.94669 0.86475 1.91500 1.89898 1.75280 1.55262 1.21126 0.93822 1.02297 1.00459 1.20923 1.00045 0.94783 0.92866 1.20049 0.81767 0.86341 0.83634 1.90629 1.39483 1.23041 1.85672 1.42398 1.54811 1.25577 1.03916 1.17246 1.14684 0.99910 0.84577 1.24123 1.03474 0.96836 0.96440 1.78261 1.21039 1.11149 0.98688 1.44541 1.29004 1.12342 1.05139 1.19813 1.37901 1.10834 0.77043 0.86681 1.25645 0.95356 0.94851 1.01294 1.70210 1.25259 1.07668 1.36490 0.85899 0.79103 0.78565 0.80592 1.19175 1.20146 1.19178 1.21237 1.12541 1.00390 0.89338 0.90842 0.91568 0.90913 0.92079 0.92030 0.84630 0.84502 0.84601 0.84798 0.77141 0.80758 0.91402 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.48 37.16 0.35 -1.24 16 2 C 0.08 0.91 3.13 -27.88 -0.09 0.82 16 3 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 4 O -0.35 -4.68 9.51 -55.09 -0.52 -5.20 16 5 C 0.10 0.92 5.87 36.00 0.21 1.13 16 6 C -0.10 -0.96 5.51 -104.62 -0.58 -1.53 16 7 C -0.06 -0.63 9.70 -39.59 -0.38 -1.02 16 8 C -0.16 -1.50 10.03 -39.51 -0.40 -1.89 16 9 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 10 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 11 C -0.16 -1.42 10.03 -39.51 -0.40 -1.82 16 12 C -0.07 -0.60 9.70 -39.59 -0.38 -0.99 16 13 C 0.50 8.74 7.15 -10.99 -0.08 8.66 16 14 O -0.51 -11.60 13.66 -14.33 -0.20 -11.79 16 15 N -0.62 -10.77 5.43 -10.00 -0.05 -10.83 16 16 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 17 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 18 N -0.26 -7.65 10.40 30.80 0.32 -7.33 16 19 N -0.14 -3.92 3.74 -11.41 -0.04 -3.96 16 20 C -0.32 -8.56 10.25 -14.81 -0.15 -8.71 16 21 H 0.12 2.70 7.83 -52.49 -0.41 2.28 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.66 11.81 55.50 0.66 -21.01 16 24 Si 0.93 18.93 29.55 -169.99 -5.02 13.90 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 28 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 29 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 30 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.41 7.81 -51.93 -0.41 0.01 16 33 H 0.06 0.48 8.03 -51.92 -0.42 0.06 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.40 5.03 8.61 -40.82 -0.35 4.68 16 39 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 40 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -35.72 364.09 -7.36 -43.08 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.79 Total: 9.04 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.23 Total: -9.91 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.88 Total: -43.13 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.72 Total: -16.99 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.72 -7.36 -43.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822883806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.493 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds