Wall clock time and date at job start Tue Mar 31 2020 18:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46664 * 2 1 4 4 O 1.42892 * 109.47300 * 239.99589 * 2 1 3 5 5 C 1.42901 * 114.00443 * 90.00006 * 4 2 1 6 6 C 1.50694 * 109.47506 * 179.97438 * 5 4 2 7 7 C 1.38250 * 119.97658 * 269.73159 * 6 5 4 8 8 C 1.38194 * 120.02481 * 179.73042 * 7 6 5 9 9 C 1.38463 * 119.97539 * 0.55499 * 8 7 6 10 10 F 1.35093 * 120.02544 * 179.68537 * 9 8 7 11 11 C 1.38463 * 119.94663 * 359.71348 * 9 8 7 12 12 C 1.38195 * 119.97418 * 359.97438 * 11 9 8 13 13 C 1.50704 * 109.46720 * 119.99075 * 2 1 3 14 14 O 1.21308 * 119.99173 * 115.00846 * 13 2 1 15 15 N 1.34769 * 120.00349 * 295.00283 * 13 2 1 16 16 C 1.40597 * 119.99949 * 180.02562 * 15 13 2 17 17 C 1.40648 * 126.08176 * 0.04729 * 16 15 13 18 18 N 1.30907 * 108.38298 * 179.70387 * 17 16 15 19 19 N 1.40067 * 108.41113 * 0.40226 * 18 17 16 20 20 C 1.37320 * 126.07294 * 179.85605 * 19 18 17 21 21 H 1.08002 * 120.00430 * 179.69232 * 20 19 18 22 22 C 1.38992 * 119.99664 * 359.41108 * 20 19 18 23 23 N 1.31294 * 120.00157 * 0.27652 * 22 20 19 24 24 Si 1.86803 * 119.99838 * 180.27798 * 22 20 19 25 25 H 1.48504 * 109.47034 * 59.99910 * 24 22 20 26 26 H 1.48498 * 109.47326 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 299.99983 * 24 22 20 28 28 C 1.35688 * 126.08014 * 179.97438 * 16 15 13 29 29 H 1.08996 * 109.47108 * 300.00409 * 1 2 3 30 30 H 1.09006 * 109.46861 * 60.00702 * 1 2 3 31 31 H 1.08996 * 109.47009 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.46918 * 300.00280 * 5 4 2 33 33 H 1.09009 * 109.46649 * 59.99659 * 5 4 2 34 34 H 1.08002 * 119.98220 * 359.97146 * 7 6 5 35 35 H 1.08001 * 120.01494 * 180.25466 * 8 7 6 36 36 H 1.07998 * 120.01136 * 179.97438 * 11 9 8 37 37 H 1.07997 * 119.98691 * 179.97438 * 12 11 9 38 38 H 0.97002 * 120.00333 * 359.97438 * 15 13 2 39 39 H 1.07999 * 125.80726 * 359.95383 * 17 16 15 40 40 H 0.97005 * 119.99961 * 179.97438 * 23 22 20 41 41 H 1.07996 * 126.24199 * 0.07665 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.2002 0.1827 -2.2941 6 6 2.7016 -0.6285 -3.4609 7 6 4.0604 -0.7956 -3.6529 8 6 4.5212 -1.5439 -4.7194 9 6 3.6217 -2.1169 -5.6024 10 9 4.0712 -2.8433 -6.6490 11 6 2.2611 -1.9441 -5.4123 12 6 1.8025 -1.2008 -4.3414 13 6 2.0323 -0.7102 1.2306 14 8 2.6531 -1.7467 1.1217 15 7 1.7918 -0.1939 2.4521 16 6 2.2609 -0.8563 3.6001 17 6 2.9912 -2.0581 3.6227 18 7 3.2538 -2.3582 4.8696 19 7 2.6960 -1.3691 5.6895 20 6 2.7534 -1.3286 7.0609 21 1 2.2910 -0.5130 7.5970 22 6 3.4017 -2.3404 7.7595 23 7 3.9638 -3.3320 7.1078 24 14 3.4731 -2.2895 9.6254 25 1 2.0932 -2.3019 10.1741 26 1 4.2157 -3.4745 10.1249 27 1 4.1678 -1.0512 10.0605 28 6 2.0907 -0.4491 4.8832 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.2540 0.6544 -2.5589 33 1 2.9321 0.9512 -2.0450 34 1 4.7620 -0.3444 -2.9668 35 1 5.5827 -1.6778 -4.8669 36 1 1.5585 -2.3902 -6.1006 37 1 0.7413 -1.0656 -4.1931 38 1 1.2957 0.6351 2.5391 39 1 3.2885 -2.6332 2.7582 40 1 4.4165 -4.0380 7.5953 41 1 1.5705 0.4401 5.2072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822883806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:38 Heat of formation + Delta-G solvation = -35.793347 kcal Electronic energy + Delta-G solvation = -26709.797471 eV Core-core repulsion = 22505.642794 eV Total energy + Delta-G solvation = -4204.154677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.94719 -41.73051 -40.64897 -40.05501 -38.35260 -35.90303 -35.01311 -33.28991 -32.23919 -32.12459 -31.57306 -29.45644 -27.05509 -26.80296 -25.00153 -24.04679 -22.86176 -22.48314 -21.79409 -21.13053 -19.32406 -18.71419 -18.28344 -17.89390 -17.48380 -17.38807 -16.69453 -16.65927 -16.57613 -16.27290 -15.79137 -15.61596 -15.31168 -15.04349 -14.82913 -14.72125 -14.48854 -14.22788 -13.95441 -13.50052 -13.37892 -13.24994 -13.23366 -13.06901 -12.86861 -12.83784 -12.53437 -12.13726 -12.03584 -11.97568 -11.80916 -10.98795 -10.87383 -10.79750 -10.34259 -10.09027 -10.08349 -9.67777 -8.51182 -8.45523 -6.23080 0.02196 0.26134 1.24248 1.40346 1.54599 1.57046 1.87890 1.89592 2.17720 2.52000 2.53098 2.89673 3.10586 3.18372 3.25615 3.72651 3.75974 3.88370 3.96734 4.02177 4.15510 4.23206 4.28172 4.45960 4.49835 4.61492 4.61654 4.78580 4.88652 4.95543 4.98558 5.01513 5.09988 5.12443 5.22339 5.28684 5.30990 5.48926 5.51417 5.88156 5.96993 6.13981 6.34593 6.75135 6.80591 7.43469 7.49782 7.70127 8.53713 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.001943 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.254355 B =14405.155924 C =15229.187585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 H 0.125 0.875 4 O -0.384 6.384 5 C 0.096 3.904 6 C -0.111 4.111 7 C -0.079 4.079 8 C -0.166 4.166 9 C 0.081 3.919 10 F -0.149 7.149 11 C -0.161 4.161 12 C -0.070 4.070 13 C 0.491 3.509 14 O -0.571 6.571 15 N -0.611 5.611 16 C -0.043 4.043 17 C -0.064 4.064 18 N -0.312 5.312 19 N -0.169 5.169 20 C -0.354 4.354 21 H 0.143 0.857 22 C -0.009 4.009 23 N -0.827 5.827 24 Si 1.020 2.980 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.252 1.252 28 C -0.078 4.078 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.422 0.578 39 H 0.161 0.839 40 H 0.276 0.724 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 13.491 -19.575 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.143 0.857 4 O -0.303 6.303 5 C 0.021 3.979 6 C -0.111 4.111 7 C -0.097 4.097 8 C -0.184 4.184 9 C 0.062 3.938 10 F -0.128 7.128 11 C -0.179 4.179 12 C -0.088 4.088 13 C 0.278 3.722 14 O -0.449 6.449 15 N -0.258 5.258 16 C -0.149 4.149 17 C -0.239 4.239 18 N -0.144 5.144 19 N 0.062 4.938 20 C -0.485 4.485 21 H 0.160 0.840 22 C -0.220 4.220 23 N -0.455 5.455 24 Si 0.839 3.161 25 H -0.176 1.176 26 H -0.205 1.205 27 H -0.176 1.176 28 C -0.228 4.228 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.260 0.740 39 H 0.178 0.822 40 H 0.085 0.915 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.612 11.510 -18.931 23.121 hybrid contribution 0.011 0.279 -0.121 0.304 sum -6.602 11.789 -19.051 23.357 Atomic orbital electron populations 1.22260 0.91293 1.03251 1.05442 1.21895 0.96354 0.96549 0.82638 0.85727 1.88117 1.86997 1.35610 1.19583 1.21634 1.01894 0.91254 0.83138 1.19907 0.93645 1.00900 0.96649 1.21195 0.95842 0.96522 0.96111 1.21345 1.00878 1.00289 0.95914 1.18052 0.93685 0.95346 0.86708 1.91474 1.90071 1.75579 1.55644 1.21405 0.93626 1.02044 1.00867 1.21237 1.01202 0.94038 0.92278 1.21340 0.80070 0.85682 0.85092 1.90614 1.41880 1.25839 1.86603 1.42335 1.54779 1.26217 1.02437 1.17326 1.12550 0.98442 0.86563 1.24121 1.05325 0.98857 0.95585 1.78156 1.22992 1.13336 0.99943 1.44848 1.30122 1.12972 1.05841 1.20596 1.38606 1.12090 0.77158 0.83953 1.26919 0.94157 0.93870 1.07099 1.70408 1.27112 1.09007 1.38956 0.84643 0.79695 0.78744 0.73052 1.17631 1.20523 1.17611 1.22025 1.11158 1.00718 0.88892 0.88992 0.88099 0.93380 0.88803 0.90606 0.84022 0.83595 0.82789 0.82391 0.74013 0.82170 0.91478 0.79086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 71.98 0.68 -1.75 16 2 C 0.09 1.81 3.13 29.85 0.09 1.90 16 3 H 0.13 1.59 7.79 -2.39 -0.02 1.57 16 4 O -0.38 -9.53 9.51 -129.99 -1.24 -10.77 16 5 C 0.10 1.47 5.87 71.23 0.42 1.89 16 6 C -0.11 -1.99 5.51 -19.86 -0.11 -2.10 16 7 C -0.08 -1.50 9.70 22.26 0.22 -1.28 16 8 C -0.17 -3.20 10.03 22.31 0.22 -2.98 16 9 C 0.08 1.64 7.30 22.38 0.16 1.80 16 10 F -0.15 -3.25 17.27 44.97 0.78 -2.47 16 11 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 12 C -0.07 -1.10 9.70 22.26 0.22 -0.88 16 13 C 0.49 16.71 7.15 87.66 0.63 17.34 16 14 O -0.57 -26.55 13.66 15.87 0.22 -26.33 16 15 N -0.61 -19.92 5.43 -303.92 -1.65 -21.57 16 16 C -0.04 -1.95 6.90 37.73 0.26 -1.69 16 17 C -0.06 -3.56 10.85 85.42 0.93 -2.64 16 18 N -0.31 -19.17 10.40 -56.47 -0.59 -19.76 16 19 N -0.17 -9.38 3.74 -190.01 -0.71 -10.09 16 20 C -0.35 -18.67 10.25 84.01 0.86 -17.81 16 21 H 0.14 6.42 7.83 -2.91 -0.02 6.39 16 22 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 23 N -0.83 -48.43 11.81 21.66 0.26 -48.17 16 24 Si 1.02 38.62 29.55 68.60 2.03 40.64 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 26 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 27 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 28 C -0.08 -3.52 11.49 83.38 0.96 -2.57 16 29 H 0.09 1.02 7.92 -2.39 -0.02 1.00 16 30 H 0.10 0.84 7.87 -2.38 -0.02 0.82 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.81 7.81 -2.39 -0.02 0.79 16 33 H 0.08 0.93 8.03 -2.38 -0.02 0.91 16 34 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.42 9.11 8.61 -92.71 -0.80 8.32 16 39 H 0.16 9.27 5.92 -2.91 -0.02 9.25 16 40 H 0.28 14.90 8.31 -92.70 -0.77 14.13 16 41 H 0.19 6.61 8.06 -2.91 -0.02 6.58 16 Total: -1.00 -84.70 364.09 5.60 -79.10 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.28 Total: 32.68 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 6.23 Total: -13.25 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -2.69 Total: -99.59 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.02 Total: -37.10 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.64 kcal Total: -84.70 5.60 -79.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822883806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.305 kcal (2) G-P(sol) polarization free energy of solvation -84.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds