Wall clock time and date at job start Tue Mar 31 2020 18:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46588 * 2 1 4 4 C 1.34947 * 126.03518 * 125.00218 * 3 2 1 5 5 C 1.35318 * 107.74609 * 180.20198 * 4 3 2 6 6 C 1.39870 * 107.91639 * 359.64106 * 5 4 3 7 7 C 1.50709 * 125.89520 * 180.13916 * 6 5 4 8 8 C 1.50692 * 109.46780 * 125.23590 * 7 6 5 9 9 O 1.21295 * 120.00688 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.40081 * 120.00382 * 174.43938 * 10 8 7 12 12 C 1.38704 * 120.07894 * 335.20285 * 11 10 8 13 13 C 1.38184 * 120.02407 * 179.69907 * 12 11 10 14 14 C 1.38560 * 120.17438 * 0.59432 * 13 12 11 15 15 F 1.35101 * 119.92401 * 179.69921 * 14 13 12 16 16 C 1.38340 * 120.15215 * 359.67818 * 14 13 12 17 17 C 1.38741 * 119.97749 * 0.02562 * 16 14 13 18 18 O 1.35775 * 120.08791 * 179.97438 * 17 16 14 19 19 C 1.34802 * 116.99774 * 5.16714 * 18 17 16 20 20 H 1.07999 * 120.00094 * 354.97792 * 19 18 17 21 21 C 1.38643 * 119.99726 * 174.98149 * 19 18 17 22 22 N 1.31564 * 120.00049 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99928 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46964 * 60.00025 * 23 21 19 25 25 H 1.48497 * 109.47344 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47453 * 300.00059 * 23 21 19 27 27 N 1.30838 * 108.20620 * 0.36448 * 6 5 4 28 28 H 1.08997 * 109.47007 * 60.00240 * 1 2 3 29 29 H 1.09004 * 109.46359 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47318 * 299.99326 * 1 2 3 31 31 H 1.09004 * 109.47252 * 240.00365 * 2 1 3 32 32 H 1.08996 * 109.47457 * 120.00044 * 2 1 3 33 33 H 1.08002 * 126.12733 * 359.93897 * 4 3 2 34 34 H 1.08001 * 126.03879 * 179.76836 * 5 4 3 35 35 H 1.08999 * 109.46916 * 245.23288 * 7 6 5 36 36 H 1.08993 * 109.46938 * 5.23685 * 7 6 5 37 37 H 0.97004 * 119.99187 * 354.44560 * 10 8 7 38 38 H 1.08007 * 119.98615 * 359.96992 * 12 11 10 39 39 H 1.08003 * 119.91797 * 180.29639 * 13 12 11 40 40 H 1.08000 * 120.01424 * 180.02562 * 16 14 13 41 41 H 0.97003 * 120.00495 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0680 3.2150 0.5487 6 6 2.3127 3.4723 -0.6002 7 6 2.2360 4.7882 -1.3308 8 6 2.5938 4.5799 -2.7797 9 8 2.8833 3.4720 -3.1797 10 7 2.5923 5.6246 -3.6312 11 6 3.0364 5.4549 -4.9489 12 6 3.9260 4.4363 -5.2569 13 6 4.3586 4.2661 -6.5582 14 6 3.9155 5.1187 -7.5566 15 9 4.3464 4.9514 -8.8261 16 6 3.0326 6.1405 -7.2565 17 6 2.5895 6.3134 -5.9532 18 8 1.7233 7.3159 -5.6560 19 6 1.2491 8.0411 -6.6887 20 1 1.6220 7.8668 -7.6872 21 6 0.2827 9.0106 -6.4690 22 7 -0.1718 9.2226 -5.2526 23 14 -0.3739 10.0160 -7.8998 24 1 -0.9960 9.1091 -8.8977 25 1 -1.3910 10.9775 -7.4037 26 1 0.7428 10.7602 -8.5357 27 7 1.6807 2.3747 -0.9282 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3180 1.4130 1.7366 34 1 3.6973 3.9231 1.0673 35 1 1.2230 5.1845 -1.2600 36 1 2.9345 5.4943 -0.8819 37 1 2.2837 6.4940 -3.3315 38 1 4.2774 3.7732 -4.4801 39 1 5.0476 3.4694 -6.7970 40 1 2.6884 6.8035 -8.0365 41 1 -0.8476 9.9012 -5.0988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844427718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:44 Heat of formation + Delta-G solvation = 1.336749 kcal Electronic energy + Delta-G solvation = -27472.947595 eV Core-core repulsion = 23270.403001 eV Total energy + Delta-G solvation = -4202.544595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.21460 -41.22475 -39.98697 -38.49973 -36.29179 -34.77740 -33.99587 -32.38420 -31.73414 -29.84130 -29.40207 -28.78447 -27.42577 -25.48198 -23.58423 -22.50024 -21.66656 -21.14814 -20.36006 -19.31152 -18.32509 -17.82660 -17.11831 -16.74016 -16.52412 -15.58611 -15.27474 -15.20712 -14.91059 -14.77029 -14.46943 -14.26947 -14.19459 -13.73070 -13.56397 -13.49141 -13.37395 -13.06612 -12.62323 -12.56999 -12.30323 -12.22862 -12.15111 -11.95976 -11.64950 -11.52625 -11.33228 -10.95193 -10.70448 -10.53621 -10.44649 -9.77846 -9.72047 -9.31256 -9.12823 -8.93243 -8.53865 -7.84511 -7.02426 -6.57988 -4.15507 1.83870 1.93713 2.15041 2.46711 2.76623 3.04074 3.08852 3.10496 3.12343 3.63345 3.87336 4.28693 4.39306 4.68798 4.70082 4.78517 4.86426 4.96615 4.99879 5.11844 5.15562 5.19975 5.35573 5.49901 5.54020 5.63786 5.68006 5.77099 5.79533 5.89888 6.04434 6.05941 6.26769 6.59399 6.64819 6.76791 6.94206 6.98618 7.02121 7.09102 7.22117 7.68369 7.80496 7.85431 7.97899 8.60272 8.87941 9.48709 10.59121 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.002972 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.824002 B = 9419.514917 C =10859.596326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.375 5.375 4 C 0.045 3.955 5 C -0.266 4.266 6 C 0.085 3.915 7 C -0.059 4.059 8 C 0.511 3.489 9 O -0.518 6.518 10 N -0.650 5.650 11 C 0.068 3.932 12 C -0.062 4.062 13 C -0.226 4.226 14 C 0.125 3.875 15 F -0.152 7.152 16 C -0.257 4.257 17 C 0.155 3.845 18 O -0.170 6.170 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 N -0.256 5.256 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.417 0.583 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.143 0.857 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -11.354 12.640 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.158 5.158 4 C -0.100 4.100 5 C -0.295 4.295 6 C -0.082 4.082 7 C -0.100 4.100 8 C 0.298 3.702 9 O -0.394 6.394 10 N -0.294 5.294 11 C -0.026 4.026 12 C -0.083 4.083 13 C -0.246 4.246 14 C 0.105 3.895 15 F -0.131 7.131 16 C -0.278 4.278 17 C 0.099 3.901 18 O -0.073 6.073 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.161 4.161 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 N -0.078 5.078 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.253 0.747 38 H 0.164 0.836 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.363 -12.615 11.901 17.666 hybrid contribution 0.164 1.250 -0.290 1.294 sum 3.527 -11.365 11.611 16.626 Atomic orbital electron populations 1.22053 0.93850 1.02702 1.03727 1.21639 0.96076 0.77716 1.03501 1.48752 1.35726 1.10178 1.21107 1.22456 0.96247 0.94846 0.96452 1.21323 1.09766 0.96717 1.01710 1.21521 0.97263 0.94134 0.95314 1.20010 1.05357 0.93273 0.91406 1.20369 0.77950 0.84299 0.87613 1.90665 1.47157 1.23744 1.77860 1.43182 1.63444 1.13409 1.09410 1.16915 1.02272 1.00210 0.83215 1.20765 0.94280 0.96831 0.96379 1.20489 1.08108 1.03441 0.92550 1.17460 0.96934 0.96757 0.78368 1.91406 1.88562 1.95201 1.37943 1.20836 1.05718 1.03302 0.97956 1.18719 0.91252 0.89335 0.90786 1.83891 1.51066 1.37086 1.35275 1.21284 1.21825 1.15889 0.87819 0.88911 1.25264 0.95562 0.97098 0.98217 1.69992 1.27626 1.31805 1.19966 0.85758 0.78887 0.79131 0.79612 1.19399 1.20196 1.19375 1.77452 1.22917 0.96288 1.11150 0.90842 0.90870 0.92203 0.89825 0.88937 0.81296 0.83595 0.86950 0.86740 0.74656 0.83599 0.86056 0.83993 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.10 37.16 0.38 -0.99 16 2 C 0.13 1.11 7.23 -4.04 -0.03 1.09 16 3 N -0.37 -4.60 3.68 -61.36 -0.23 -4.83 16 4 C 0.05 0.47 11.45 -17.22 -0.20 0.27 16 5 C -0.27 -3.10 10.72 -40.01 -0.43 -3.53 16 6 C 0.09 1.23 6.01 -82.40 -0.50 0.73 16 7 C -0.06 -0.77 6.28 -29.03 -0.18 -0.95 16 8 C 0.51 8.88 7.63 -10.99 -0.08 8.80 16 9 O -0.52 -10.60 12.73 5.54 0.07 -10.53 16 10 N -0.65 -12.01 5.29 -9.72 -0.05 -12.06 16 11 C 0.07 1.45 6.45 -83.45 -0.54 0.91 16 12 C -0.06 -1.24 8.71 -39.43 -0.34 -1.58 16 13 C -0.23 -4.35 10.02 -39.48 -0.40 -4.75 16 14 C 0.12 2.56 7.29 -39.42 -0.29 2.27 16 15 F -0.15 -2.99 17.26 2.25 0.04 -2.95 16 16 C -0.26 -5.72 9.14 -39.36 -0.36 -6.08 16 17 C 0.15 3.61 6.66 -38.93 -0.26 3.35 16 18 O -0.17 -4.45 9.17 0.05 0.00 -4.45 16 19 C -0.39 -10.40 9.49 30.88 0.29 -10.10 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 21 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 22 N -0.86 -23.46 13.67 55.48 0.76 -22.70 16 23 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 N -0.26 -4.11 11.77 33.67 0.40 -3.71 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.11 1.12 8.12 -51.93 -0.42 0.70 16 37 H 0.42 7.27 8.34 -40.82 -0.34 6.93 16 38 H 0.15 2.86 5.79 -52.48 -0.30 2.56 16 39 H 0.12 2.04 8.06 -52.48 -0.42 1.61 16 40 H 0.14 3.14 5.63 -52.49 -0.30 2.85 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -33.43 361.47 -6.19 -39.62 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.57 Total: 10.90 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.03 Total: -9.52 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.88 Total: -43.30 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.07 Total: -14.97 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.43 -6.19 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844427718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.953 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds