Wall clock time and date at job start Tue Mar 31 2020 18:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46588 * 2 1 4 4 C 1.34947 * 126.03518 * 125.00218 * 3 2 1 5 5 C 1.35318 * 107.74609 * 180.20198 * 4 3 2 6 6 C 1.39870 * 107.91639 * 359.64106 * 5 4 3 7 7 C 1.50709 * 125.89520 * 180.13916 * 6 5 4 8 8 C 1.50692 * 109.46780 * 125.23590 * 7 6 5 9 9 O 1.21295 * 120.00688 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.40081 * 120.00382 * 174.43938 * 10 8 7 12 12 C 1.38704 * 120.07894 * 335.20285 * 11 10 8 13 13 C 1.38184 * 120.02407 * 179.69907 * 12 11 10 14 14 C 1.38560 * 120.17438 * 0.59432 * 13 12 11 15 15 F 1.35101 * 119.92401 * 179.69921 * 14 13 12 16 16 C 1.38340 * 120.15215 * 359.67818 * 14 13 12 17 17 C 1.38741 * 119.97749 * 0.02562 * 16 14 13 18 18 O 1.35775 * 120.08791 * 179.97438 * 17 16 14 19 19 C 1.34802 * 116.99774 * 5.16714 * 18 17 16 20 20 H 1.07999 * 120.00094 * 354.97792 * 19 18 17 21 21 C 1.38643 * 119.99726 * 174.98149 * 19 18 17 22 22 N 1.31564 * 120.00049 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99928 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46964 * 60.00025 * 23 21 19 25 25 H 1.48497 * 109.47344 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47453 * 300.00059 * 23 21 19 27 27 N 1.30838 * 108.20620 * 0.36448 * 6 5 4 28 28 H 1.08997 * 109.47007 * 60.00240 * 1 2 3 29 29 H 1.09004 * 109.46359 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47318 * 299.99326 * 1 2 3 31 31 H 1.09004 * 109.47252 * 240.00365 * 2 1 3 32 32 H 1.08996 * 109.47457 * 120.00044 * 2 1 3 33 33 H 1.08002 * 126.12733 * 359.93897 * 4 3 2 34 34 H 1.08001 * 126.03879 * 179.76836 * 5 4 3 35 35 H 1.08999 * 109.46916 * 245.23288 * 7 6 5 36 36 H 1.08993 * 109.46938 * 5.23685 * 7 6 5 37 37 H 0.97004 * 119.99187 * 354.44560 * 10 8 7 38 38 H 1.08007 * 119.98615 * 359.96992 * 12 11 10 39 39 H 1.08003 * 119.91797 * 180.29639 * 13 12 11 40 40 H 1.08000 * 120.01424 * 180.02562 * 16 14 13 41 41 H 0.97003 * 120.00495 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8730 1.9212 0.8939 5 6 3.0680 3.2150 0.5487 6 6 2.3127 3.4723 -0.6002 7 6 2.2360 4.7882 -1.3308 8 6 2.5938 4.5799 -2.7797 9 8 2.8833 3.4720 -3.1797 10 7 2.5923 5.6246 -3.6312 11 6 3.0364 5.4549 -4.9489 12 6 3.9260 4.4363 -5.2569 13 6 4.3586 4.2661 -6.5582 14 6 3.9155 5.1187 -7.5566 15 9 4.3464 4.9514 -8.8261 16 6 3.0326 6.1405 -7.2565 17 6 2.5895 6.3134 -5.9532 18 8 1.7233 7.3159 -5.6560 19 6 1.2491 8.0411 -6.6887 20 1 1.6220 7.8668 -7.6872 21 6 0.2827 9.0106 -6.4690 22 7 -0.1718 9.2226 -5.2526 23 14 -0.3739 10.0160 -7.8998 24 1 -0.9960 9.1091 -8.8977 25 1 -1.3910 10.9775 -7.4037 26 1 0.7428 10.7602 -8.5357 27 7 1.6807 2.3747 -0.9282 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3180 1.4130 1.7366 34 1 3.6973 3.9231 1.0673 35 1 1.2230 5.1845 -1.2600 36 1 2.9345 5.4943 -0.8819 37 1 2.2837 6.4940 -3.3315 38 1 4.2774 3.7732 -4.4801 39 1 5.0476 3.4694 -6.7970 40 1 2.6884 6.8035 -8.0365 41 1 -0.8476 9.9012 -5.0988 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844427718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:43 Heat of formation + Delta-G solvation = -19.968769 kcal Electronic energy + Delta-G solvation = -27473.871472 eV Core-core repulsion = 23270.403001 eV Total energy + Delta-G solvation = -4203.468471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.83951 -42.16708 -41.52225 -40.13703 -38.00811 -35.65803 -35.48005 -34.30310 -32.71481 -31.13048 -30.76429 -30.08169 -28.64495 -27.37714 -24.59762 -23.97416 -23.24029 -21.96951 -21.72515 -20.43467 -20.15571 -19.48045 -18.29903 -18.18741 -17.74920 -17.06312 -16.92844 -16.56140 -16.24972 -16.15153 -15.94369 -15.56603 -15.48053 -15.23218 -15.08720 -14.89491 -14.43717 -14.25013 -14.01724 -13.82026 -13.62374 -13.40865 -13.35977 -13.08018 -12.93116 -12.83214 -12.58224 -12.34914 -12.21153 -12.15681 -11.66621 -11.37908 -11.28422 -10.83883 -10.72563 -10.14785 -9.57031 -9.39888 -8.71351 -8.50373 -6.16103 0.16984 0.44273 1.06531 1.37509 1.45950 1.51269 1.62422 1.69250 1.80025 2.14051 2.29945 2.68097 3.02248 3.19004 3.44301 3.49823 3.79429 3.89420 3.96255 4.08063 4.12438 4.17533 4.32653 4.34499 4.36949 4.54220 4.63780 4.69529 4.81689 4.92101 4.93390 4.97637 5.00801 5.16586 5.21136 5.24692 5.30428 5.34135 5.54330 5.75456 5.93438 6.03095 6.29488 6.51184 6.88936 6.93973 7.16381 7.61801 8.69994 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.002972 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.824002 B = 9419.514917 C =10859.596326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 N -0.380 5.380 4 C 0.056 3.944 5 C -0.280 4.280 6 C 0.064 3.936 7 C -0.052 4.052 8 C 0.512 3.488 9 O -0.549 6.549 10 N -0.652 5.652 11 C 0.069 3.931 12 C -0.065 4.065 13 C -0.203 4.203 14 C 0.118 3.882 15 F -0.145 7.145 16 C -0.263 4.263 17 C 0.129 3.871 18 O -0.201 6.201 19 C -0.418 4.418 20 H 0.098 0.902 21 C -0.007 4.007 22 N -0.903 5.903 23 Si 1.010 2.990 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.259 1.259 27 N -0.316 5.316 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.216 0.784 34 H 0.170 0.830 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.420 0.580 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.137 0.863 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.502 -12.644 13.761 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 N -0.163 5.163 4 C -0.090 4.090 5 C -0.309 4.309 6 C -0.103 4.103 7 C -0.093 4.093 8 C 0.301 3.699 9 O -0.427 6.427 10 N -0.296 5.296 11 C -0.026 4.026 12 C -0.085 4.085 13 C -0.223 4.223 14 C 0.098 3.902 15 F -0.124 7.124 16 C -0.284 4.284 17 C 0.075 3.925 18 O -0.107 6.107 19 C -0.494 4.494 20 H 0.116 0.884 21 C -0.207 4.207 22 N -0.540 5.540 23 Si 0.830 3.170 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.183 1.183 27 N -0.139 5.139 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.232 0.768 34 H 0.188 0.812 35 H 0.138 0.862 36 H 0.169 0.831 37 H 0.257 0.743 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.600 -13.931 13.026 19.619 hybrid contribution -0.070 1.387 -0.570 1.501 sum 4.530 -12.544 12.456 18.249 Atomic orbital electron populations 1.21997 0.94063 1.03810 1.01853 1.21988 0.96008 0.76414 1.05289 1.49069 1.35872 1.10704 1.20704 1.23217 0.94635 0.94606 0.96543 1.21697 1.10038 0.98021 1.01192 1.21810 0.97957 0.94023 0.96494 1.20092 1.06686 0.94202 0.88277 1.21129 0.76534 0.83304 0.88937 1.90634 1.48491 1.24829 1.78702 1.43318 1.63482 1.14096 1.08702 1.17194 1.01711 0.99590 0.84111 1.20937 0.94058 0.96480 0.97024 1.20868 1.06813 1.02939 0.91672 1.17441 0.96995 0.96703 0.79041 1.91423 1.88390 1.95112 1.37445 1.20929 1.06054 1.03781 0.97590 1.19059 0.91646 0.89882 0.91905 1.83872 1.52749 1.38508 1.35552 1.21694 1.22653 1.16652 0.88356 0.88434 1.26363 0.95445 0.97917 1.01013 1.70102 1.28762 1.33041 1.22059 0.84753 0.78474 0.77550 0.76193 1.18852 1.19362 1.18287 1.77349 1.24996 0.97857 1.13719 0.94355 0.88254 0.92318 0.90472 0.84620 0.76753 0.81220 0.86172 0.83134 0.74261 0.82838 0.82752 0.84528 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.10 71.98 0.73 -1.77 16 2 C 0.12 1.86 7.23 86.38 0.62 2.48 16 3 N -0.38 -8.80 3.68 -348.05 -1.28 -10.08 16 4 C 0.06 0.99 11.45 83.54 0.96 1.95 16 5 C -0.28 -5.93 10.72 21.99 0.24 -5.69 16 6 C 0.06 1.79 6.01 43.10 0.26 2.05 16 7 C -0.05 -1.33 6.28 29.10 0.18 -1.14 16 8 C 0.51 17.86 7.63 87.65 0.67 18.53 16 9 O -0.55 -22.57 12.73 -3.08 -0.04 -22.61 16 10 N -0.65 -24.48 5.29 -303.04 -1.60 -26.09 16 11 C 0.07 2.96 6.45 38.23 0.25 3.21 16 12 C -0.06 -2.52 8.71 22.37 0.19 -2.33 16 13 C -0.20 -7.45 10.02 22.33 0.22 -7.23 16 14 C 0.12 4.74 7.29 22.37 0.16 4.90 16 15 F -0.14 -5.47 17.26 44.97 0.78 -4.70 16 16 C -0.26 -11.85 9.14 22.41 0.20 -11.64 16 17 C 0.13 6.17 6.66 22.69 0.15 6.32 16 18 O -0.20 -10.99 9.17 -22.74 -0.21 -11.20 16 19 C -0.42 -22.91 9.49 67.92 0.64 -22.26 16 20 H 0.10 5.03 5.20 -2.91 -0.02 5.02 16 21 C -0.01 -0.39 5.49 84.83 0.47 0.07 16 22 N -0.90 -50.85 13.67 21.61 0.30 -50.56 16 23 Si 1.01 41.02 29.55 68.60 2.03 43.05 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 27 N -0.32 -10.17 11.77 -47.38 -0.56 -10.73 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.14 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.22 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.15 2.68 8.12 -2.39 -0.02 2.66 16 37 H 0.42 15.14 8.34 -92.70 -0.77 14.37 16 38 H 0.15 5.86 5.79 -2.91 -0.02 5.85 16 39 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 40 H 0.14 6.21 5.63 -2.91 -0.02 6.19 16 41 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -75.82 361.47 5.68 -70.13 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.32 Total: 35.33 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.95 Total: -12.55 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -3.14 Total: -97.45 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.25 Total: -33.81 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -75.82 5.68 -70.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844427718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.165 kcal (2) G-P(sol) polarization free energy of solvation -75.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds