Wall clock time and date at job start Tue Mar 31 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47154 * 2 1 4 4 C 1.53001 * 109.47124 * 119.99651 * 2 1 3 5 5 C 1.50708 * 109.46997 * 295.00202 * 4 2 1 6 6 C 1.34670 * 126.59202 * 85.02852 * 5 4 2 7 7 N 1.34124 * 108.01890 * 179.97438 * 6 5 4 8 8 C 1.30501 * 109.25816 * 359.97438 * 7 6 5 9 9 N 1.35043 * 108.69958 * 359.76423 * 8 7 6 10 10 H 0.96995 * 126.39896 * 180.26735 * 9 8 7 11 11 C 1.50691 * 109.47442 * 239.99917 * 2 1 3 12 12 O 1.21302 * 120.00302 * 239.99990 * 11 2 1 13 13 N 1.34773 * 120.00351 * 59.99433 * 11 2 1 14 14 C 1.40085 * 120.00701 * 183.93927 * 13 11 2 15 15 C 1.38715 * 120.07429 * 334.50170 * 14 13 11 16 16 C 1.38189 * 120.02074 * 179.69383 * 15 14 13 17 17 C 1.38555 * 120.17661 * 0.27553 * 16 15 14 18 18 F 1.35094 * 119.92405 * 180.02562 * 17 16 15 19 19 C 1.38342 * 120.15215 * 359.97438 * 17 16 15 20 20 C 1.38741 * 119.98106 * 0.02562 * 19 17 16 21 21 O 1.35771 * 120.09202 * 179.97438 * 20 19 17 22 22 C 1.34807 * 116.99882 * 354.37092 * 21 20 19 23 23 H 1.08003 * 119.99832 * 354.62811 * 22 21 20 24 24 C 1.38632 * 120.00460 * 174.62515 * 22 21 20 25 25 N 1.31575 * 119.99610 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00727 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46703 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47245 * 119.99705 * 26 24 22 29 29 H 1.48493 * 109.47120 * 240.00360 * 26 24 22 30 30 H 1.09001 * 109.46693 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47006 * 300.00122 * 1 2 3 32 32 H 1.08996 * 109.47203 * 60.00087 * 1 2 3 33 33 H 1.08994 * 109.47038 * 54.99874 * 4 2 1 34 34 H 1.08996 * 109.47196 * 175.00239 * 4 2 1 35 35 H 1.08004 * 125.98451 * 359.95695 * 6 5 4 36 36 H 1.08004 * 125.64657 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99638 * 3.94404 * 13 11 2 38 38 H 1.07997 * 119.98923 * 359.97095 * 15 14 13 39 39 H 1.07993 * 119.90974 * 180.29498 * 16 15 14 40 40 H 1.08003 * 120.01053 * 179.97438 * 19 17 16 41 41 H 0.96997 * 120.00335 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.4665 -0.0212 3.1304 7 7 0.5106 0.8299 4.1662 8 6 1.6681 1.4323 4.1793 9 7 2.4061 0.9749 3.1450 10 1 3.3086 1.2473 2.9170 11 6 2.0324 -0.7104 -1.2304 12 8 2.7298 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4545 14 6 2.1042 -0.9564 -3.5971 15 6 3.2208 -1.7783 -3.5529 16 6 3.6082 -2.4795 -4.6789 17 6 2.8873 -2.3599 -5.8561 18 9 3.2702 -3.0481 -6.9537 19 6 1.7756 -1.5382 -5.9097 20 6 1.3809 -0.8313 -4.7830 21 8 0.2906 -0.0239 -4.8333 22 6 -0.2959 0.1384 -6.0363 23 1 0.1539 -0.2923 -6.9187 24 6 -1.4762 0.8579 -6.1407 25 7 -2.0239 1.3829 -5.0657 26 14 -2.2893 1.0821 -7.8075 27 1 -1.4797 0.4000 -8.8488 28 1 -3.6528 0.4947 -7.7762 29 1 -2.3812 2.5303 -8.1225 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 -0.3653 -0.6576 2.8667 36 1 1.9851 2.1709 4.9007 37 1 1.1972 0.5705 -2.5444 38 1 3.7849 -1.8738 -2.6369 39 1 4.4749 -3.1226 -4.6411 40 1 1.2156 -1.4464 -6.8287 41 1 -2.8499 1.8860 -5.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847574366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:01 Heat of formation + Delta-G solvation = -28.449675 kcal Electronic energy + Delta-G solvation = -27740.250308 eV Core-core repulsion = 23536.414077 eV Total energy + Delta-G solvation = -4203.836231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.28478 -42.22454 -40.34274 -38.78761 -36.47755 -35.01423 -34.20832 -32.62519 -32.45249 -30.15161 -29.40856 -28.20532 -26.68212 -25.56680 -23.89773 -22.37668 -21.72955 -21.37702 -20.88287 -19.70094 -18.42124 -17.99903 -17.93438 -16.85444 -16.72832 -15.48337 -15.28739 -15.27002 -15.10648 -14.98288 -14.58578 -14.31841 -14.12602 -13.90196 -13.75379 -13.56737 -13.50388 -13.22207 -12.97464 -12.61893 -12.36513 -12.25900 -11.95608 -11.71989 -11.46528 -11.30839 -11.19847 -11.01037 -10.76889 -10.54509 -10.16310 -10.11905 -9.85790 -9.82112 -9.25617 -9.00688 -8.49638 -7.93298 -7.13880 -6.64900 -4.22782 1.74543 1.85764 2.07299 2.83069 2.94039 3.01471 3.02992 3.05578 3.10800 3.44080 3.81420 4.30032 4.47818 4.62720 4.75049 4.79471 4.82065 4.92709 5.04832 5.07004 5.20820 5.27784 5.41927 5.54008 5.58680 5.70911 5.74708 5.85482 5.97476 6.00325 6.13718 6.16627 6.29495 6.51601 6.59255 6.69367 6.86906 6.91517 6.99512 7.13339 7.18371 7.60623 7.77796 7.84148 7.90326 8.41641 8.81188 9.40974 10.52052 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003213 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.288153 B = 8713.738583 C =10990.486902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.094 0.906 4 C -0.025 4.025 5 C -0.015 4.015 6 C -0.021 4.021 7 N -0.495 5.495 8 C 0.177 3.823 9 N -0.568 5.568 10 H 0.419 0.581 11 C 0.514 3.486 12 O -0.537 6.537 13 N -0.643 5.643 14 C 0.059 3.941 15 C -0.064 4.064 16 C -0.229 4.229 17 C 0.127 3.873 18 F -0.152 7.152 19 C -0.258 4.258 20 C 0.156 3.844 21 O -0.169 6.169 22 C -0.393 4.393 23 H 0.095 0.905 24 C 0.044 3.956 25 N -0.858 5.858 26 Si 0.942 3.058 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.275 1.275 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.170 0.830 36 H 0.206 0.794 37 H 0.417 0.583 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 0.809 11.535 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 H 0.113 0.887 4 C -0.064 4.064 5 C -0.131 4.131 6 C -0.169 4.169 7 N -0.214 5.214 8 C -0.106 4.106 9 N -0.171 5.171 10 H 0.256 0.744 11 C 0.301 3.699 12 O -0.416 6.416 13 N -0.285 5.285 14 C -0.036 4.036 15 C -0.085 4.085 16 C -0.249 4.249 17 C 0.107 3.893 18 F -0.130 7.130 19 C -0.279 4.279 20 C 0.100 3.900 21 O -0.072 6.072 22 C -0.468 4.468 23 H 0.112 0.888 24 C -0.161 4.161 25 N -0.492 5.492 26 Si 0.766 3.234 27 H -0.190 1.190 28 H -0.200 1.200 29 H -0.200 1.200 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.187 0.813 36 H 0.222 0.778 37 H 0.253 0.747 38 H 0.172 0.828 39 H 0.140 0.860 40 H 0.160 0.840 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.349 0.508 12.422 14.442 hybrid contribution 0.399 0.455 -1.913 2.006 sum 7.749 0.962 10.509 13.092 Atomic orbital electron populations 1.21906 0.91873 1.03373 1.03690 1.21225 0.98691 1.00386 0.91957 0.88741 1.19852 1.01938 0.97756 0.86862 1.21296 0.94031 0.98398 0.99350 1.22152 0.97622 1.02458 0.94677 1.70286 1.19400 1.10120 1.21549 1.24942 0.88893 1.02951 0.93822 1.43320 1.16438 1.33160 1.24198 0.74388 1.20571 0.80370 0.84533 0.84404 1.90581 1.37871 1.26633 1.86477 1.43169 1.54541 1.26957 1.03872 1.16977 0.97521 1.03685 0.85415 1.21043 0.93856 0.94839 0.98729 1.20537 1.04018 1.08009 0.92324 1.17498 0.95275 0.93642 0.82837 1.91409 1.90853 1.77936 1.52846 1.20852 1.01056 1.04770 1.01178 1.18756 0.88614 0.90908 0.91770 1.83914 1.34578 1.54901 1.33818 1.21385 1.06728 1.35513 0.83208 0.88793 1.25281 0.95430 0.95810 0.99623 1.70009 1.18976 1.31869 1.28308 0.85623 0.79221 0.78601 0.79934 1.18964 1.19979 1.20007 0.91726 0.90901 0.91077 0.88527 0.90222 0.81312 0.77776 0.74657 0.82758 0.85977 0.83955 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.78 37.16 0.33 -1.46 16 2 C -0.10 -1.15 2.71 -91.78 -0.25 -1.40 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.03 -0.26 4.60 -27.88 -0.13 -0.38 16 5 C -0.02 -0.15 6.09 -81.60 -0.50 -0.65 16 6 C -0.02 -0.24 10.10 -17.81 -0.18 -0.42 16 7 N -0.49 -6.03 11.25 -14.66 -0.16 -6.20 16 8 C 0.18 1.55 13.04 -90.37 -1.18 0.37 16 9 N -0.57 -4.44 6.15 -10.29 -0.06 -4.50 16 10 H 0.42 2.00 8.96 -40.82 -0.37 1.64 16 11 C 0.51 7.82 7.04 -10.99 -0.08 7.74 16 12 O -0.54 -9.27 12.84 5.54 0.07 -9.20 16 13 N -0.64 -11.08 5.15 -9.72 -0.05 -11.13 16 14 C 0.06 1.17 6.48 -83.45 -0.54 0.63 16 15 C -0.06 -1.20 8.79 -39.42 -0.35 -1.55 16 16 C -0.23 -4.16 10.02 -39.48 -0.40 -4.56 16 17 C 0.13 2.51 7.29 -39.43 -0.29 2.22 16 18 F -0.15 -2.87 17.26 2.25 0.04 -2.84 16 19 C -0.26 -5.53 9.11 -39.36 -0.36 -5.89 16 20 C 0.16 3.48 6.66 -38.93 -0.26 3.22 16 21 O -0.17 -4.28 9.18 0.05 0.00 -4.28 16 22 C -0.39 -10.11 9.44 30.88 0.29 -9.82 16 23 H 0.09 2.29 5.29 -52.48 -0.28 2.02 16 24 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 25 N -0.86 -22.89 13.67 55.48 0.76 -22.13 16 26 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 29 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.80 6.18 -51.93 -0.32 0.48 16 32 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 35 H 0.17 1.75 8.02 -52.48 -0.42 1.33 16 36 H 0.21 0.97 8.06 -52.48 -0.42 0.54 16 37 H 0.42 7.02 7.90 -40.82 -0.32 6.70 16 38 H 0.16 2.76 5.52 -52.49 -0.29 2.47 16 39 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.14 3.07 5.71 -52.48 -0.30 2.77 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -31.07 354.06 -7.43 -38.50 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.36 Total: 13.03 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.98 Total: -10.93 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.48 Total: -43.95 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.07 Total: -13.48 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.07 -7.43 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847574366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.051 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds