Wall clock time and date at job start Tue Mar 31 2020 18:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47154 * 2 1 4 4 C 1.53001 * 109.47124 * 119.99651 * 2 1 3 5 5 C 1.50708 * 109.46997 * 295.00202 * 4 2 1 6 6 C 1.34670 * 126.59202 * 85.02852 * 5 4 2 7 7 N 1.34124 * 108.01890 * 179.97438 * 6 5 4 8 8 C 1.30501 * 109.25816 * 359.97438 * 7 6 5 9 9 N 1.35043 * 108.69958 * 359.76423 * 8 7 6 10 10 H 0.96995 * 126.39896 * 180.26735 * 9 8 7 11 11 C 1.50691 * 109.47442 * 239.99917 * 2 1 3 12 12 O 1.21302 * 120.00302 * 239.99990 * 11 2 1 13 13 N 1.34773 * 120.00351 * 59.99433 * 11 2 1 14 14 C 1.40085 * 120.00701 * 183.93927 * 13 11 2 15 15 C 1.38715 * 120.07429 * 334.50170 * 14 13 11 16 16 C 1.38189 * 120.02074 * 179.69383 * 15 14 13 17 17 C 1.38555 * 120.17661 * 0.27553 * 16 15 14 18 18 F 1.35094 * 119.92405 * 180.02562 * 17 16 15 19 19 C 1.38342 * 120.15215 * 359.97438 * 17 16 15 20 20 C 1.38741 * 119.98106 * 0.02562 * 19 17 16 21 21 O 1.35771 * 120.09202 * 179.97438 * 20 19 17 22 22 C 1.34807 * 116.99882 * 354.37092 * 21 20 19 23 23 H 1.08003 * 119.99832 * 354.62811 * 22 21 20 24 24 C 1.38632 * 120.00460 * 174.62515 * 22 21 20 25 25 N 1.31575 * 119.99610 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00727 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46703 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47245 * 119.99705 * 26 24 22 29 29 H 1.48493 * 109.47120 * 240.00360 * 26 24 22 30 30 H 1.09001 * 109.46693 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47006 * 300.00122 * 1 2 3 32 32 H 1.08996 * 109.47203 * 60.00087 * 1 2 3 33 33 H 1.08994 * 109.47038 * 54.99874 * 4 2 1 34 34 H 1.08996 * 109.47196 * 175.00239 * 4 2 1 35 35 H 1.08004 * 125.98451 * 359.95695 * 6 5 4 36 36 H 1.08004 * 125.64657 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99638 * 3.94404 * 13 11 2 38 38 H 1.07997 * 119.98923 * 359.97095 * 15 14 13 39 39 H 1.07993 * 119.90974 * 180.29498 * 16 15 14 40 40 H 1.08003 * 120.01053 * 179.97438 * 19 17 16 41 41 H 0.96997 * 120.00335 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.4665 -0.0212 3.1304 7 7 0.5106 0.8299 4.1662 8 6 1.6681 1.4323 4.1793 9 7 2.4061 0.9749 3.1450 10 1 3.3086 1.2473 2.9170 11 6 2.0324 -0.7104 -1.2304 12 8 2.7298 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4545 14 6 2.1042 -0.9564 -3.5971 15 6 3.2208 -1.7783 -3.5529 16 6 3.6082 -2.4795 -4.6789 17 6 2.8873 -2.3599 -5.8561 18 9 3.2702 -3.0481 -6.9537 19 6 1.7756 -1.5382 -5.9097 20 6 1.3809 -0.8313 -4.7830 21 8 0.2906 -0.0239 -4.8333 22 6 -0.2959 0.1384 -6.0363 23 1 0.1539 -0.2923 -6.9187 24 6 -1.4762 0.8579 -6.1407 25 7 -2.0239 1.3829 -5.0657 26 14 -2.2893 1.0821 -7.8075 27 1 -1.4797 0.4000 -8.8488 28 1 -3.6528 0.4947 -7.7762 29 1 -2.3812 2.5303 -8.1225 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 -0.3653 -0.6576 2.8667 36 1 1.9851 2.1709 4.9007 37 1 1.1972 0.5705 -2.5444 38 1 3.7849 -1.8738 -2.6369 39 1 4.4749 -3.1226 -4.6411 40 1 1.2156 -1.4464 -6.8287 41 1 -2.8499 1.8860 -5.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847574366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:01 Heat of formation + Delta-G solvation = -46.892930 kcal Electronic energy + Delta-G solvation = -27741.050068 eV Core-core repulsion = 23536.414077 eV Total energy + Delta-G solvation = -4204.635991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.83612 -42.96390 -41.76035 -40.34929 -38.09245 -36.06041 -35.63203 -34.31167 -33.37032 -31.26974 -30.88668 -29.64714 -27.56984 -27.40606 -25.09410 -23.91060 -23.00934 -22.32423 -21.70472 -20.93136 -20.17153 -19.52088 -18.81056 -18.30469 -18.03966 -17.00704 -16.81361 -16.59866 -16.45909 -16.08843 -15.95535 -15.57864 -15.38184 -15.29551 -15.15848 -14.99912 -14.60284 -14.38484 -14.03132 -13.95007 -13.68938 -13.52972 -13.43271 -13.05018 -13.04071 -12.60552 -12.33341 -12.26337 -12.14603 -12.12907 -11.68113 -11.28152 -10.92629 -10.89664 -10.83990 -10.59467 -9.56831 -9.27285 -8.73962 -8.51711 -6.17415 0.17063 0.45336 1.11872 1.37293 1.42541 1.52852 1.53832 2.04199 2.14211 2.26701 2.37239 2.67320 3.03341 3.17175 3.44818 3.48595 3.82450 3.89686 3.92351 3.98566 4.15147 4.23325 4.33719 4.36524 4.42616 4.63172 4.67092 4.77449 4.81042 4.87367 4.95602 5.00392 5.10907 5.22459 5.26467 5.30880 5.35530 5.38092 5.52073 5.82000 5.92475 6.04268 6.45946 6.62243 6.93190 7.07699 7.18316 7.60934 8.68720 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003213 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.288153 B = 8713.738583 C =10990.486902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.115 0.885 4 C -0.015 4.015 5 C -0.016 4.016 6 C -0.043 4.043 7 N -0.540 5.540 8 C 0.189 3.811 9 N -0.556 5.556 10 H 0.435 0.565 11 C 0.517 3.483 12 O -0.553 6.553 13 N -0.648 5.648 14 C 0.062 3.938 15 C -0.066 4.066 16 C -0.204 4.204 17 C 0.118 3.882 18 F -0.146 7.146 19 C -0.265 4.265 20 C 0.128 3.872 21 O -0.202 6.202 22 C -0.415 4.415 23 H 0.097 0.903 24 C -0.007 4.007 25 N -0.902 5.902 26 Si 1.009 2.991 27 H -0.258 1.258 28 H -0.270 1.270 29 H -0.267 1.267 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.167 0.833 36 H 0.243 0.757 37 H 0.417 0.583 38 H 0.170 0.830 39 H 0.157 0.843 40 H 0.134 0.866 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 0.752 12.234 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.133 0.867 4 C -0.054 4.054 5 C -0.132 4.132 6 C -0.190 4.190 7 N -0.260 5.260 8 C -0.095 4.095 9 N -0.161 5.161 10 H 0.275 0.725 11 C 0.306 3.694 12 O -0.432 6.432 13 N -0.291 5.291 14 C -0.033 4.033 15 C -0.086 4.086 16 C -0.224 4.224 17 C 0.098 3.902 18 F -0.125 7.125 19 C -0.286 4.286 20 C 0.075 3.925 21 O -0.107 6.107 22 C -0.490 4.490 23 H 0.115 0.885 24 C -0.207 4.207 25 N -0.539 5.539 26 Si 0.830 3.170 27 H -0.181 1.181 28 H -0.195 1.195 29 H -0.192 1.192 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.184 0.816 36 H 0.259 0.741 37 H 0.254 0.746 38 H 0.187 0.813 39 H 0.175 0.825 40 H 0.151 0.849 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.258 0.430 13.130 16.072 hybrid contribution 0.045 0.355 -1.991 2.023 sum 9.303 0.784 11.139 14.535 Atomic orbital electron populations 1.21841 0.92252 1.02890 1.03286 1.21196 0.98082 1.01150 0.90518 0.86699 1.19719 1.02241 0.97237 0.86178 1.21097 0.93941 0.98920 0.99255 1.22283 0.98392 1.03019 0.95281 1.70265 1.21541 1.11560 1.22597 1.25676 0.87848 1.02185 0.93767 1.43283 1.17011 1.32260 1.23562 0.72467 1.21206 0.79432 0.84206 0.84534 1.90556 1.38613 1.27370 1.86659 1.43321 1.54825 1.26973 1.03938 1.17263 0.97197 1.03254 0.85604 1.21288 0.93399 0.94429 0.99468 1.20945 1.03820 1.06549 0.91041 1.17514 0.95159 0.93825 0.83677 1.91423 1.90691 1.77696 1.52673 1.20925 1.01745 1.05142 1.00741 1.19125 0.88622 0.91608 0.93177 1.83893 1.36121 1.56916 1.33765 1.21733 1.07364 1.36156 0.83782 0.88518 1.26329 0.95698 0.95299 1.03344 1.70114 1.19791 1.33508 1.30476 0.84643 0.78089 0.78811 0.75487 1.18143 1.19513 1.19197 0.92322 0.89792 0.92880 0.89223 0.89362 0.81552 0.74077 0.74637 0.81348 0.82536 0.84850 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.78 71.98 0.63 -2.79 16 2 C -0.09 -1.90 2.71 -11.54 -0.03 -1.93 16 3 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 4 C -0.01 -0.27 4.60 29.85 0.14 -0.14 16 5 C -0.02 -0.28 6.09 40.95 0.25 -0.03 16 6 C -0.04 -0.94 10.10 83.52 0.84 -0.10 16 7 N -0.54 -12.53 11.25 -200.31 -2.25 -14.79 16 8 C 0.19 2.83 13.04 180.26 2.35 5.18 16 9 N -0.56 -7.22 6.15 -186.48 -1.15 -8.36 16 10 H 0.43 2.74 8.96 -92.71 -0.83 1.91 16 11 C 0.52 15.19 7.04 87.65 0.62 15.80 16 12 O -0.55 -18.13 12.84 -3.10 -0.04 -18.17 16 13 N -0.65 -22.29 5.15 -303.04 -1.56 -23.84 16 14 C 0.06 2.46 6.48 38.23 0.25 2.71 16 15 C -0.07 -2.32 8.79 22.37 0.20 -2.13 16 16 C -0.20 -6.87 10.02 22.33 0.22 -6.65 16 17 C 0.12 4.50 7.29 22.37 0.16 4.66 16 18 F -0.15 -5.29 17.26 44.97 0.78 -4.51 16 19 C -0.26 -11.48 9.11 22.42 0.20 -11.27 16 20 C 0.13 5.87 6.66 22.69 0.15 6.02 16 21 O -0.20 -10.64 9.18 -22.73 -0.21 -10.85 16 22 C -0.41 -22.13 9.44 67.91 0.64 -21.49 16 23 H 0.10 4.89 5.29 -2.91 -0.02 4.88 16 24 C -0.01 -0.35 5.49 84.83 0.47 0.12 16 25 N -0.90 -49.87 13.67 21.61 0.30 -49.58 16 26 Si 1.01 40.28 29.55 68.60 2.03 42.31 16 27 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 28 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 29 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.81 6.18 -2.39 -0.01 1.80 16 32 H 0.05 1.45 7.66 -2.39 -0.02 1.43 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 1.52 7.95 -2.39 -0.02 1.50 16 35 H 0.17 3.51 8.02 -2.91 -0.02 3.49 16 36 H 0.24 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.42 14.41 7.90 -92.71 -0.73 13.68 16 38 H 0.17 5.57 5.52 -2.91 -0.02 5.55 16 39 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.13 5.93 5.71 -2.91 -0.02 5.91 16 41 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -68.48 354.06 4.54 -63.94 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.44 Total: 35.89 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 7.09 Total: -12.03 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -4.66 Total: -96.57 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.25 Total: -29.02 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -68.48 4.54 -63.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847574366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.047 kcal (2) G-P(sol) polarization free energy of solvation -68.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds