Wall clock time and date at job start Tue Mar 31 2020 18:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47309 * 2 1 4 4 C 1.53004 * 109.46846 * 239.99855 * 2 1 3 5 5 C 1.50695 * 109.47208 * 65.00370 * 4 2 1 6 6 C 1.34674 * 126.59044 * 85.01841 * 5 4 2 7 7 N 1.34128 * 108.01690 * 179.97438 * 6 5 4 8 8 C 1.30495 * 109.25950 * 0.02562 * 7 6 5 9 9 N 1.35045 * 108.69952 * 359.76309 * 8 7 6 10 10 H 0.96998 * 126.40039 * 180.26809 * 9 8 7 11 11 C 1.50700 * 109.46892 * 120.00279 * 2 1 3 12 12 O 1.21292 * 120.00002 * 119.72583 * 11 2 1 13 13 N 1.34782 * 119.99619 * 299.99566 * 11 2 1 14 14 C 1.40085 * 119.99696 * 174.16586 * 13 11 2 15 15 C 1.38710 * 120.07978 * 335.19648 * 14 13 11 16 16 C 1.38185 * 120.02452 * 179.70145 * 15 14 13 17 17 C 1.38553 * 120.17567 * 0.59420 * 16 15 14 18 18 F 1.35099 * 119.92366 * 179.70184 * 17 16 15 19 19 C 1.38346 * 120.15319 * 359.68092 * 17 16 15 20 20 C 1.38744 * 119.97445 * 0.02562 * 19 17 16 21 21 O 1.35773 * 120.08929 * 179.97438 * 20 19 17 22 22 C 1.34808 * 116.99722 * 5.16096 * 21 20 19 23 23 H 1.07999 * 120.00173 * 354.98374 * 22 21 20 24 24 C 1.38640 * 120.00263 * 174.98345 * 22 21 20 25 25 N 1.31568 * 119.99768 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47322 * 90.00086 * 26 24 22 28 28 H 1.48499 * 109.47104 * 209.99934 * 26 24 22 29 29 H 1.48497 * 109.47002 * 330.00096 * 26 24 22 30 30 H 1.09009 * 109.47072 * 60.00079 * 1 2 3 31 31 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47145 * 299.99890 * 1 2 3 33 33 H 1.09003 * 109.46882 * 185.00281 * 4 2 1 34 34 H 1.09001 * 109.47148 * 304.99776 * 4 2 1 35 35 H 1.07997 * 125.99179 * 359.96937 * 6 5 4 36 36 H 1.08000 * 125.65086 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00415 * 354.16831 * 13 11 2 38 38 H 1.08005 * 119.98731 * 359.97438 * 15 14 13 39 39 H 1.08000 * 119.91528 * 180.29962 * 16 15 14 40 40 H 1.07998 * 120.01257 * 180.02562 * 19 17 16 41 41 H 0.96999 * 120.00588 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 6 2.3075 1.0926 -3.0219 7 7 1.6244 1.5035 -4.1006 8 6 0.5600 0.7623 -4.2441 9 7 0.5352 -0.1559 -3.2542 10 1 -0.1410 -0.8381 -3.1187 11 6 2.0323 -0.7105 1.2304 12 8 2.7255 -1.6995 1.1191 13 7 1.7067 -0.2499 2.4546 14 6 2.0696 -0.9769 3.5957 15 6 2.2807 -2.3452 3.5104 16 6 2.6446 -3.0601 4.6355 17 6 2.7878 -2.4160 5.8538 18 9 3.1380 -3.1210 6.9518 19 6 2.5735 -1.0526 5.9485 20 6 2.2138 -0.3275 4.8216 21 8 2.0024 1.0106 4.9119 22 6 2.2620 1.5923 6.1000 23 1 2.5431 0.9858 6.9483 24 6 2.1681 2.9691 6.2330 25 7 1.8262 3.7080 5.1996 26 14 2.5285 3.7752 7.8791 27 1 3.9718 4.1153 7.9584 28 1 1.7202 5.0140 8.0112 29 1 2.1799 2.8374 8.9764 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7199 -1.2951 35 1 3.2300 1.5177 -2.6550 36 1 -0.1766 0.8635 -5.0274 37 1 1.2210 0.5848 2.5454 38 1 2.1648 -2.8512 2.5633 39 1 2.8133 -4.1246 4.5660 40 1 2.6862 -0.5527 6.8992 41 1 1.7608 4.6714 5.2924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847574367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:06 Heat of formation + Delta-G solvation = -29.175453 kcal Electronic energy + Delta-G solvation = -27695.207446 eV Core-core repulsion = 23491.339743 eV Total energy + Delta-G solvation = -4203.867703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.28790 -42.22210 -40.33741 -38.79378 -36.48447 -35.03962 -34.20286 -32.53271 -32.45000 -30.33947 -29.45314 -28.26855 -26.55094 -25.57368 -24.00024 -22.39155 -21.72880 -21.51921 -20.79412 -19.63910 -18.40742 -18.04514 -17.93200 -16.89428 -16.67772 -15.67926 -15.31863 -15.25764 -15.04845 -14.92813 -14.49863 -14.30863 -14.23354 -13.95752 -13.65090 -13.59930 -13.53924 -13.32235 -12.89605 -12.72066 -12.34491 -12.25772 -12.22447 -11.71624 -11.48200 -11.45121 -11.24225 -11.03130 -10.76603 -10.55705 -10.15470 -10.11483 -9.85621 -9.83172 -9.34667 -8.99873 -8.49946 -7.93432 -7.12637 -6.64269 -4.22114 1.72854 1.86099 2.06376 2.86559 2.92496 3.02334 3.04307 3.06028 3.10150 3.42131 3.81743 4.29846 4.47632 4.60941 4.71111 4.76598 4.79134 4.93285 4.97857 5.07551 5.16052 5.29270 5.38421 5.48675 5.54152 5.58274 5.67740 5.70343 5.90552 5.95241 5.97873 6.16388 6.17634 6.48901 6.59753 6.67527 6.86263 6.89216 6.98478 7.14198 7.18406 7.58742 7.78159 7.84187 7.90801 8.41988 8.81636 9.41070 10.52706 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.003172 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.039446 B = 8824.677741 C =10991.345919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.024 4.024 5 C -0.013 4.013 6 C -0.024 4.024 7 N -0.494 5.494 8 C 0.177 3.823 9 N -0.567 5.567 10 H 0.418 0.582 11 C 0.514 3.486 12 O -0.536 6.536 13 N -0.645 5.645 14 C 0.062 3.938 15 C -0.061 4.061 16 C -0.227 4.227 17 C 0.127 3.873 18 F -0.151 7.151 19 C -0.257 4.257 20 C 0.155 3.845 21 O -0.170 6.170 22 C -0.393 4.393 23 H 0.095 0.905 24 C 0.044 3.956 25 N -0.858 5.858 26 Si 0.942 3.058 27 H -0.272 1.272 28 H -0.276 1.276 29 H -0.266 1.266 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.169 0.831 36 H 0.205 0.795 37 H 0.417 0.583 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -7.005 -12.025 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.124 0.876 4 C -0.063 4.063 5 C -0.129 4.129 6 C -0.171 4.171 7 N -0.213 5.213 8 C -0.106 4.106 9 N -0.171 5.171 10 H 0.256 0.744 11 C 0.301 3.699 12 O -0.414 6.414 13 N -0.288 5.288 14 C -0.032 4.032 15 C -0.081 4.081 16 C -0.247 4.247 17 C 0.108 3.892 18 F -0.130 7.130 19 C -0.278 4.278 20 C 0.099 3.901 21 O -0.073 6.073 22 C -0.469 4.469 23 H 0.112 0.888 24 C -0.161 4.161 25 N -0.492 5.492 26 Si 0.767 3.233 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.191 1.191 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.187 0.813 36 H 0.222 0.778 37 H 0.254 0.746 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.161 0.839 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.288 -6.569 -12.842 15.048 hybrid contribution -0.551 -0.166 1.773 1.864 sum -4.839 -6.736 -11.069 13.831 Atomic orbital electron populations 1.21818 0.92904 1.02461 1.03114 1.21291 0.97637 1.01617 0.92124 0.87580 1.19850 1.02874 0.96876 0.86745 1.21268 0.91064 1.02546 0.98001 1.22161 1.02110 0.97603 0.95255 1.70282 1.05526 1.26770 1.18701 1.24938 0.99972 0.90388 0.95334 1.43339 1.21489 1.28815 1.23426 0.74444 1.20527 0.79910 0.85056 0.84358 1.90631 1.37464 1.26670 1.86585 1.43204 1.55764 1.25874 1.03919 1.16932 1.11210 0.90780 0.84326 1.20753 0.97676 0.90890 0.98802 1.20493 1.12658 1.00112 0.91464 1.17472 0.99791 0.89415 0.82570 1.91412 1.89786 1.78888 1.52934 1.20853 1.13846 0.92521 1.00611 1.18723 0.94250 0.85679 0.91399 1.83890 1.73180 1.14137 1.36057 1.21340 1.48727 0.90600 0.86199 0.88798 1.25283 0.96220 0.95036 0.99599 1.69998 1.43041 1.06362 1.29829 0.85678 0.78851 0.78890 0.79912 1.19708 1.20121 1.19054 0.91799 0.92173 0.91301 0.88325 0.90401 0.81331 0.77803 0.74617 0.83567 0.85954 0.83939 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.91 37.16 0.33 -1.06 16 2 C -0.11 -1.18 2.71 -91.77 -0.25 -1.43 16 3 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.02 -0.25 4.59 -27.88 -0.13 -0.37 16 5 C -0.01 -0.13 5.57 -81.60 -0.45 -0.59 16 6 C -0.02 -0.27 11.79 -17.81 -0.21 -0.48 16 7 N -0.49 -6.07 11.25 -14.67 -0.16 -6.23 16 8 C 0.18 1.53 13.04 -90.38 -1.18 0.35 16 9 N -0.57 -4.29 5.79 -10.30 -0.06 -4.35 16 10 H 0.42 1.91 8.96 -40.82 -0.37 1.55 16 11 C 0.51 7.83 6.96 -10.98 -0.08 7.76 16 12 O -0.54 -9.36 13.09 5.55 0.07 -9.29 16 13 N -0.64 -11.12 5.14 -9.72 -0.05 -11.17 16 14 C 0.06 1.23 6.45 -83.45 -0.54 0.70 16 15 C -0.06 -1.13 8.71 -39.43 -0.34 -1.47 16 16 C -0.23 -4.11 10.02 -39.48 -0.40 -4.51 16 17 C 0.13 2.50 7.29 -39.43 -0.29 2.21 16 18 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 19 C -0.26 -5.51 9.14 -39.35 -0.36 -5.87 16 20 C 0.16 3.49 6.66 -38.93 -0.26 3.23 16 21 O -0.17 -4.32 9.17 0.04 0.00 -4.32 16 22 C -0.39 -10.18 9.49 30.88 0.29 -9.88 16 23 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 24 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 25 N -0.86 -23.06 13.67 55.48 0.76 -22.30 16 26 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 28 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 29 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 30 H 0.06 0.55 7.08 -51.92 -0.37 0.19 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 33 H 0.10 1.08 7.96 -51.93 -0.41 0.67 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.21 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.42 7.05 7.95 -40.82 -0.32 6.72 16 38 H 0.15 2.58 5.79 -52.48 -0.30 2.28 16 39 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.14 3.06 5.63 -52.49 -0.30 2.76 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -31.38 356.29 -7.43 -38.81 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.42 Total: 12.27 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.95 Total: -10.40 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.48 Total: -44.05 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.07 Total: -13.61 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.38 -7.43 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847574367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.633 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds