Wall clock time and date at job start Tue Mar 31 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47309 * 2 1 4 4 C 1.53004 * 109.46846 * 239.99855 * 2 1 3 5 5 C 1.50695 * 109.47208 * 65.00370 * 4 2 1 6 6 C 1.34674 * 126.59044 * 85.01841 * 5 4 2 7 7 N 1.34128 * 108.01690 * 179.97438 * 6 5 4 8 8 C 1.30495 * 109.25950 * 0.02562 * 7 6 5 9 9 N 1.35045 * 108.69952 * 359.76309 * 8 7 6 10 10 H 0.96998 * 126.40039 * 180.26809 * 9 8 7 11 11 C 1.50700 * 109.46892 * 120.00279 * 2 1 3 12 12 O 1.21292 * 120.00002 * 119.72583 * 11 2 1 13 13 N 1.34782 * 119.99619 * 299.99566 * 11 2 1 14 14 C 1.40085 * 119.99696 * 174.16586 * 13 11 2 15 15 C 1.38710 * 120.07978 * 335.19648 * 14 13 11 16 16 C 1.38185 * 120.02452 * 179.70145 * 15 14 13 17 17 C 1.38553 * 120.17567 * 0.59420 * 16 15 14 18 18 F 1.35099 * 119.92366 * 179.70184 * 17 16 15 19 19 C 1.38346 * 120.15319 * 359.68092 * 17 16 15 20 20 C 1.38744 * 119.97445 * 0.02562 * 19 17 16 21 21 O 1.35773 * 120.08929 * 179.97438 * 20 19 17 22 22 C 1.34808 * 116.99722 * 5.16096 * 21 20 19 23 23 H 1.07999 * 120.00173 * 354.98374 * 22 21 20 24 24 C 1.38640 * 120.00263 * 174.98345 * 22 21 20 25 25 N 1.31568 * 119.99768 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00290 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47322 * 90.00086 * 26 24 22 28 28 H 1.48499 * 109.47104 * 209.99934 * 26 24 22 29 29 H 1.48497 * 109.47002 * 330.00096 * 26 24 22 30 30 H 1.09009 * 109.47072 * 60.00079 * 1 2 3 31 31 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47145 * 299.99890 * 1 2 3 33 33 H 1.09003 * 109.46882 * 185.00281 * 4 2 1 34 34 H 1.09001 * 109.47148 * 304.99776 * 4 2 1 35 35 H 1.07997 * 125.99179 * 359.96937 * 6 5 4 36 36 H 1.08000 * 125.65086 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00415 * 354.16831 * 13 11 2 38 38 H 1.08005 * 119.98731 * 359.97438 * 15 14 13 39 39 H 1.08000 * 119.91528 * 180.29962 * 16 15 14 40 40 H 1.07998 * 120.01257 * 180.02562 * 19 17 16 41 41 H 0.96999 * 120.00588 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 6 2.3075 1.0926 -3.0219 7 7 1.6244 1.5035 -4.1006 8 6 0.5600 0.7623 -4.2441 9 7 0.5352 -0.1559 -3.2542 10 1 -0.1410 -0.8381 -3.1187 11 6 2.0323 -0.7105 1.2304 12 8 2.7255 -1.6995 1.1191 13 7 1.7067 -0.2499 2.4546 14 6 2.0696 -0.9769 3.5957 15 6 2.2807 -2.3452 3.5104 16 6 2.6446 -3.0601 4.6355 17 6 2.7878 -2.4160 5.8538 18 9 3.1380 -3.1210 6.9518 19 6 2.5735 -1.0526 5.9485 20 6 2.2138 -0.3275 4.8216 21 8 2.0024 1.0106 4.9119 22 6 2.2620 1.5923 6.1000 23 1 2.5431 0.9858 6.9483 24 6 2.1681 2.9691 6.2330 25 7 1.8262 3.7080 5.1996 26 14 2.5285 3.7752 7.8791 27 1 3.9718 4.1153 7.9584 28 1 1.7202 5.0140 8.0112 29 1 2.1799 2.8374 8.9764 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7199 -1.2951 35 1 3.2300 1.5177 -2.6550 36 1 -0.1766 0.8635 -5.0274 37 1 1.2210 0.5848 2.5454 38 1 2.1648 -2.8512 2.5633 39 1 2.8133 -4.1246 4.5660 40 1 2.6862 -0.5527 6.8992 41 1 1.7608 4.6714 5.2924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847574367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:05 Heat of formation + Delta-G solvation = -47.838461 kcal Electronic energy + Delta-G solvation = -27696.016735 eV Core-core repulsion = 23491.339743 eV Total energy + Delta-G solvation = -4204.676992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.83393 -42.96408 -41.75369 -40.35144 -38.09922 -36.04766 -35.62883 -34.31642 -33.27881 -31.33141 -30.98947 -29.73041 -27.42870 -27.33968 -25.16784 -23.93764 -22.99967 -22.41680 -21.69167 -20.83609 -20.16554 -19.52027 -18.84015 -18.30822 -17.98864 -17.08992 -16.95399 -16.56396 -16.31259 -16.12686 -15.95129 -15.58666 -15.40224 -15.30865 -15.21714 -14.79787 -14.71518 -14.33073 -14.06350 -13.82058 -13.77643 -13.52715 -13.42992 -13.18453 -13.05155 -12.61854 -12.37269 -12.30456 -12.15502 -12.09534 -11.67077 -11.28907 -10.90954 -10.89620 -10.84837 -10.68456 -9.56912 -9.28527 -8.72655 -8.51977 -6.17633 0.15888 0.44751 1.12086 1.36904 1.43484 1.51771 1.56210 2.03482 2.14054 2.26093 2.36742 2.67341 3.01432 3.18691 3.44742 3.48500 3.83456 3.86990 3.92121 3.97521 4.14706 4.23158 4.31005 4.34453 4.45867 4.63298 4.66456 4.72782 4.76135 4.87174 4.92602 4.99063 5.09613 5.16758 5.22068 5.29759 5.34437 5.38184 5.51986 5.81164 5.92142 6.02560 6.45870 6.62766 6.92884 7.08061 7.18323 7.60605 8.68484 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.003172 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.039446 B = 8824.677741 C =10991.345919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.104 0.896 4 C -0.014 4.014 5 C -0.010 4.010 6 C -0.051 4.051 7 N -0.540 5.540 8 C 0.191 3.809 9 N -0.554 5.554 10 H 0.435 0.565 11 C 0.517 3.483 12 O -0.554 6.554 13 N -0.650 5.650 14 C 0.065 3.935 15 C -0.062 4.062 16 C -0.202 4.202 17 C 0.118 3.882 18 F -0.146 7.146 19 C -0.264 4.264 20 C 0.127 3.873 21 O -0.203 6.203 22 C -0.416 4.416 23 H 0.098 0.902 24 C -0.007 4.007 25 N -0.904 5.904 26 Si 1.010 2.990 27 H -0.267 1.267 28 H -0.269 1.269 29 H -0.257 1.257 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.244 0.756 37 H 0.417 0.583 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.135 0.865 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 -8.767 -12.829 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.122 0.878 4 C -0.053 4.053 5 C -0.127 4.127 6 C -0.198 4.198 7 N -0.260 5.260 8 C -0.094 4.094 9 N -0.159 5.159 10 H 0.276 0.724 11 C 0.307 3.693 12 O -0.433 6.433 13 N -0.293 5.293 14 C -0.030 4.030 15 C -0.082 4.082 16 C -0.221 4.221 17 C 0.098 3.902 18 F -0.124 7.124 19 C -0.285 4.285 20 C 0.074 3.926 21 O -0.109 6.109 22 C -0.491 4.491 23 H 0.116 0.884 24 C -0.207 4.207 25 N -0.540 5.540 26 Si 0.830 3.170 27 H -0.192 1.192 28 H -0.194 1.194 29 H -0.181 1.181 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.182 0.818 36 H 0.260 0.740 37 H 0.254 0.746 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.127 -8.394 -13.656 16.830 hybrid contribution -0.283 0.123 1.877 1.903 sum -5.411 -8.272 -11.779 15.377 Atomic orbital electron populations 1.21793 0.91176 1.03374 1.03379 1.21277 0.98910 1.00997 0.90489 0.87762 1.19718 1.02256 0.97224 0.86146 1.21041 0.91664 1.01997 0.97952 1.22288 1.02737 0.98728 0.96026 1.70251 1.07335 1.28769 1.19638 1.25677 0.99275 0.88999 0.95417 1.43272 1.21089 1.28913 1.22592 0.72438 1.21207 0.78926 0.84678 0.84538 1.90607 1.38189 1.27691 1.86819 1.43365 1.56024 1.25895 1.03989 1.17230 1.09721 0.91554 0.84514 1.21000 0.97347 0.90194 0.99639 1.20909 1.09284 1.01708 0.90238 1.17487 1.00435 0.88809 0.83436 1.91426 1.89740 1.78509 1.52761 1.20933 1.13811 0.93581 1.00170 1.19103 0.95521 0.85156 0.92820 1.83870 1.75440 1.15484 1.36077 1.21714 1.49337 0.91305 0.86784 0.88421 1.26348 0.95859 0.95277 1.03252 1.70106 1.45261 1.06641 1.32029 0.84695 0.78752 0.77981 0.75580 1.19220 1.19377 1.18083 0.90442 0.90919 0.92135 0.89427 0.89256 0.81846 0.74011 0.74625 0.82049 0.82453 0.84776 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.91 71.98 0.64 -1.77 16 2 C -0.10 -2.04 2.71 -11.54 -0.03 -2.07 16 3 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.01 -0.27 4.59 29.85 0.14 -0.13 16 5 C -0.01 -0.18 5.57 40.95 0.23 0.05 16 6 C -0.05 -1.17 11.79 83.52 0.98 -0.19 16 7 N -0.54 -12.79 11.25 -200.31 -2.25 -15.04 16 8 C 0.19 2.81 13.04 180.26 2.35 5.16 16 9 N -0.55 -6.90 5.79 -186.50 -1.08 -7.98 16 10 H 0.43 2.46 8.96 -92.71 -0.83 1.63 16 11 C 0.52 15.33 6.96 87.66 0.61 15.94 16 12 O -0.55 -18.58 13.09 -3.07 -0.04 -18.62 16 13 N -0.65 -22.46 5.14 -303.03 -1.56 -24.01 16 14 C 0.07 2.58 6.45 38.23 0.25 2.82 16 15 C -0.06 -2.16 8.71 22.37 0.19 -1.97 16 16 C -0.20 -6.75 10.02 22.33 0.22 -6.53 16 17 C 0.12 4.48 7.29 22.37 0.16 4.64 16 18 F -0.15 -5.24 17.26 44.97 0.78 -4.46 16 19 C -0.26 -11.43 9.14 22.42 0.20 -11.22 16 20 C 0.13 5.85 6.66 22.69 0.15 6.00 16 21 O -0.20 -10.80 9.17 -22.77 -0.21 -11.01 16 22 C -0.42 -22.33 9.49 67.92 0.64 -21.69 16 23 H 0.10 4.95 5.20 -2.91 -0.02 4.93 16 24 C -0.01 -0.39 5.49 84.83 0.47 0.07 16 25 N -0.90 -50.33 13.67 21.61 0.30 -50.04 16 26 Si 1.01 40.48 29.55 68.60 2.03 42.51 16 27 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 28 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 29 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 30 H 0.08 1.15 7.08 -2.38 -0.02 1.14 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.17 7.71 -2.39 -0.02 1.15 16 33 H 0.09 1.86 7.96 -2.39 -0.02 1.84 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.24 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.42 14.51 7.95 -92.71 -0.74 13.78 16 38 H 0.16 5.26 5.79 -2.91 -0.02 5.24 16 39 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 40 H 0.13 5.93 5.63 -2.91 -0.02 5.91 16 41 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -69.65 356.29 4.73 -64.93 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.45 Total: 34.60 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 7.22 Total: -10.87 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -4.60 Total: -97.08 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.25 Total: -29.63 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -69.65 4.73 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847574367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.088 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds