Wall clock time and date at job start Tue Mar 31 2020 17:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47080 * 240.00087 * 2 1 3 5 5 C 1.50695 * 109.47500 * 59.99816 * 4 2 1 6 6 C 1.35358 * 126.75522 * 125.29026 * 5 4 2 7 7 N 1.35312 * 106.17385 * 180.12684 * 6 5 4 8 8 C 1.46504 * 125.86775 * 179.90386 * 7 6 5 9 9 C 1.52997 * 109.46765 * 123.86549 * 8 7 6 10 10 C 1.50696 * 115.56510 * 320.13269 * 9 8 7 11 11 H 1.08000 * 120.00058 * 97.26620 * 10 9 8 12 12 C 1.37882 * 120.00027 * 277.26421 * 10 9 8 13 13 N 1.31518 * 119.99698 * 8.47056 * 12 10 9 14 14 Si 1.86794 * 119.99948 * 188.46958 * 12 10 9 15 15 H 1.48500 * 109.47249 * 90.00269 * 14 12 10 16 16 H 1.48509 * 109.46751 * 209.99875 * 14 12 10 17 17 H 1.48495 * 109.47631 * 329.99865 * 14 12 10 18 18 C 1.53003 * 117.49635 * 105.82156 * 9 8 7 19 19 C 1.52998 * 60.00131 * 107.48789 * 18 9 8 20 20 N 1.28717 * 108.26577 * 359.64442 * 7 6 5 21 21 N 1.28629 * 110.17754 * 0.22976 * 20 7 6 22 22 C 1.50695 * 109.47605 * 119.99869 * 2 1 3 23 23 C 1.33397 * 125.20363 * 270.00559 * 22 2 1 24 24 C 1.38422 * 114.91821 * 179.97438 * 23 22 2 25 25 C 1.33387 * 114.92628 * 359.97438 * 24 23 22 26 26 S 1.75886 * 125.20317 * 89.69199 * 22 2 1 27 27 H 1.09005 * 109.46658 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46965 * 299.99765 * 1 2 3 29 29 H 1.08995 * 109.47342 * 60.00470 * 1 2 3 30 30 H 0.96696 * 114.00042 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47138 * 299.99415 * 4 2 1 32 32 H 1.09006 * 109.46888 * 179.97438 * 4 2 1 33 33 H 1.07995 * 126.91315 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.46809 * 3.87453 * 8 7 6 35 35 H 1.08995 * 109.47313 * 243.86814 * 8 7 6 36 36 H 0.96999 * 119.99650 * 174.98962 * 13 12 10 37 37 H 1.08999 * 117.50134 * 214.98160 * 18 9 8 38 38 H 1.09003 * 117.49927 * 359.97438 * 18 9 8 39 39 H 1.09002 * 117.49886 * 252.50867 * 19 18 9 40 40 H 1.08996 * 117.49760 * 107.49150 * 19 18 9 41 41 H 1.07992 * 122.53674 * 359.97438 * 23 22 2 42 42 H 1.08002 * 122.53364 * 180.02562 * 24 23 22 43 43 H 1.08000 * 125.20519 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 6 2.2857 0.4643 -3.5028 7 7 1.4172 1.0229 -4.3771 8 6 1.7706 1.6709 -5.6427 9 6 1.0120 0.9989 -6.7888 10 6 0.8965 -0.5011 -6.7011 11 1 0.0013 -0.9511 -6.2982 12 6 1.9338 -1.2989 -7.1353 13 7 3.0848 -0.7571 -7.4692 14 14 1.7044 -3.1492 -7.2491 15 1 1.1965 -3.5029 -8.5990 16 1 3.0067 -3.8246 -7.0177 17 1 0.7281 -3.5912 -6.2214 18 6 -0.1631 1.7632 -7.4021 19 6 1.1449 1.6170 -8.1822 20 7 0.2266 0.8824 -3.9085 21 7 0.2641 0.2698 -2.7781 22 6 2.0324 -0.7103 1.2304 23 6 2.2887 -0.1289 2.4033 24 6 2.7423 -0.9850 3.3919 25 6 2.8539 -2.2617 3.0222 26 16 2.3632 -2.4342 1.3419 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 2.9702 1.4237 -0.0004 31 1 1.6767 -1.7489 -1.2492 32 1 3.1300 -0.7208 -1.2494 33 1 3.3599 0.4100 -3.6007 34 1 2.8432 1.5761 -5.8122 35 1 1.5015 2.7261 -5.5982 36 1 3.8368 -1.3227 -7.7048 37 1 -1.0197 1.1811 -7.7420 38 1 -0.3959 2.7446 -6.9887 39 1 1.7729 2.5022 -8.2822 40 1 1.1489 0.9386 -9.0353 41 1 2.1526 0.9296 2.5689 42 1 2.9865 -0.6450 4.3875 43 1 3.1909 -3.0669 3.6581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849144663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:28 Heat of formation + Delta-G solvation = 108.574245 kcal Electronic energy + Delta-G solvation = -26298.940700 eV Core-core repulsion = 22667.259448 eV Total energy + Delta-G solvation = -3631.681252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37814 -38.99340 -37.04682 -36.74462 -33.58473 -32.40085 -32.09762 -30.73326 -28.60495 -27.12196 -26.74996 -25.51163 -24.23219 -21.71327 -21.39187 -21.18623 -20.38678 -19.47101 -19.04039 -17.89242 -16.85260 -16.12721 -15.68820 -15.51124 -15.16562 -14.78032 -14.71816 -14.29592 -14.07157 -13.69470 -13.34576 -13.08677 -12.96457 -12.65946 -12.32162 -12.19456 -12.06778 -11.89770 -11.78696 -11.69716 -11.20524 -11.10196 -11.00127 -10.76386 -10.64316 -10.55417 -10.45948 -10.27878 -9.96784 -9.79265 -9.10531 -8.99912 -8.79366 -8.59714 -8.58356 -8.33689 -8.26116 -6.21603 -4.25892 0.86049 1.50605 1.89555 2.55307 2.62611 3.20363 3.26675 3.27926 3.33724 3.39140 4.29846 4.31128 4.50719 4.82916 4.92223 5.03699 5.06239 5.11328 5.21871 5.38064 5.47020 5.52253 5.70680 5.74861 5.79592 5.82064 5.95533 6.03489 6.06905 6.10085 6.18914 6.22429 6.26710 6.36075 6.41813 6.59526 6.64495 6.78774 6.86164 7.02835 7.12429 7.31024 7.57365 7.66964 7.75962 8.24716 8.78303 9.41669 9.42704 10.87037 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003274 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.828545 B = 8550.483733 C = 9572.861599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.214 3.786 3 O -0.539 6.539 4 C -0.052 4.052 5 C -0.032 4.032 6 C -0.036 4.036 7 N -0.237 5.237 8 C 0.151 3.849 9 C 0.030 3.970 10 C -0.488 4.488 11 H 0.061 0.939 12 C 0.076 3.924 13 N -0.882 5.882 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.197 4.197 19 C -0.153 4.153 20 N -0.069 5.069 21 N -0.285 5.285 22 C -0.200 4.200 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.223 4.223 26 S 0.111 5.889 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.372 0.628 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 1.138 16.590 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.171 3.829 3 O -0.344 6.344 4 C -0.092 4.092 5 C -0.171 4.171 6 C -0.189 4.189 7 N -0.029 5.029 8 C 0.030 3.970 9 C 0.029 3.971 10 C -0.526 4.526 11 H 0.080 0.920 12 C -0.128 4.128 13 N -0.519 5.519 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.235 4.235 19 C -0.192 4.192 20 N -0.048 5.048 21 N -0.151 5.151 22 C -0.318 4.318 23 C -0.160 4.160 24 C -0.166 4.166 25 C -0.358 4.358 26 S 0.374 5.626 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.125 0.875 30 H 0.219 0.781 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.191 0.809 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.614 0.290 15.184 15.272 hybrid contribution 2.158 -0.372 0.926 2.377 sum 3.771 -0.082 16.110 16.546 Atomic orbital electron populations 1.22004 0.90455 1.02959 1.04630 1.19495 0.95566 0.80938 0.86906 1.86635 1.26321 1.24892 1.96563 1.20491 1.00371 0.98571 0.89737 1.21121 0.90920 1.06918 0.98137 1.23052 0.98485 1.04976 0.92359 1.47023 1.04413 1.35326 1.16090 1.21840 1.01991 0.93640 0.79488 1.18910 0.95149 0.94102 0.88980 1.20349 1.02683 0.87854 1.41708 0.92043 1.24936 0.95204 0.98502 0.94133 1.69933 1.01212 1.35269 1.45439 0.86649 0.77684 0.85435 0.78731 1.20422 1.21151 1.19778 1.23037 0.93175 1.00184 1.07073 1.22601 0.98304 1.00992 0.97263 1.78157 1.04494 1.16921 1.05247 1.74768 1.18750 1.14358 1.07226 1.25513 1.08314 0.96995 1.00990 1.20074 1.02563 1.01647 0.91735 1.20179 1.03040 0.92618 1.00779 1.25700 1.09763 1.00938 0.99420 1.84441 1.63995 1.06086 1.08043 0.91540 0.92809 0.87476 0.78071 0.89819 0.90134 0.80876 0.87932 0.91323 0.92838 0.90073 0.91272 0.91529 0.89692 0.83996 0.84537 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.44 37.16 0.31 -1.76 16 2 C 0.21 2.81 1.01 -91.78 -0.09 2.72 16 3 O -0.54 -7.10 12.08 -35.23 -0.43 -7.53 16 4 C -0.05 -0.73 4.55 -27.89 -0.13 -0.86 16 5 C -0.03 -0.58 6.03 -82.77 -0.50 -1.08 16 6 C -0.04 -0.67 11.49 -17.04 -0.20 -0.87 16 7 N -0.24 -4.94 2.78 -61.26 -0.17 -5.11 16 8 C 0.15 3.07 6.53 -4.04 -0.03 3.04 16 9 C 0.03 0.68 1.52 -155.66 -0.24 0.44 16 10 C -0.49 -12.74 8.06 -34.44 -0.28 -13.02 16 11 H 0.06 1.74 7.83 -52.49 -0.41 1.32 16 12 C 0.08 1.97 5.39 -17.82 -0.10 1.87 16 13 N -0.88 -22.95 13.09 55.43 0.73 -22.22 16 14 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.20 -4.09 9.88 -26.73 -0.26 -4.36 16 19 C -0.15 -3.27 9.66 -26.73 -0.26 -3.53 16 20 N -0.07 -1.53 12.85 60.35 0.78 -0.76 16 21 N -0.29 -5.94 9.59 33.29 0.32 -5.62 16 22 C -0.20 -2.32 5.24 -36.00 -0.19 -2.51 16 23 C -0.13 -1.38 9.63 -41.21 -0.40 -1.78 16 24 C -0.14 -1.26 10.18 -41.21 -0.42 -1.68 16 25 C -0.22 -2.06 11.23 29.04 0.33 -1.73 16 26 S 0.11 1.18 22.09 -107.50 -2.37 -1.19 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 1.84 5.31 -51.93 -0.28 1.57 16 30 H 0.37 3.61 9.04 45.56 0.41 4.02 16 31 H 0.08 1.20 7.54 -51.93 -0.39 0.80 16 32 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 33 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 34 H 0.10 2.06 8.07 -51.93 -0.42 1.64 16 35 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 36 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.14 1.42 7.91 -52.49 -0.42 1.00 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -29.41 375.25 -8.23 -37.64 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.27 Total: 8.34 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.44 Total: -25.10 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 1.65 Total: -33.70 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.43 Total: -7.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.37 Total: -1.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.41 -8.23 -37.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.215 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds