Wall clock time and date at job start Tue Mar 31 2020 17:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47080 * 240.00087 * 2 1 3 5 5 C 1.50695 * 109.47500 * 59.99816 * 4 2 1 6 6 C 1.35358 * 126.75522 * 125.29026 * 5 4 2 7 7 N 1.35312 * 106.17385 * 180.12684 * 6 5 4 8 8 C 1.46504 * 125.86775 * 179.90386 * 7 6 5 9 9 C 1.52997 * 109.46765 * 123.86549 * 8 7 6 10 10 C 1.50696 * 115.56510 * 320.13269 * 9 8 7 11 11 H 1.08000 * 120.00058 * 97.26620 * 10 9 8 12 12 C 1.37882 * 120.00027 * 277.26421 * 10 9 8 13 13 N 1.31518 * 119.99698 * 8.47056 * 12 10 9 14 14 Si 1.86794 * 119.99948 * 188.46958 * 12 10 9 15 15 H 1.48500 * 109.47249 * 90.00269 * 14 12 10 16 16 H 1.48509 * 109.46751 * 209.99875 * 14 12 10 17 17 H 1.48495 * 109.47631 * 329.99865 * 14 12 10 18 18 C 1.53003 * 117.49635 * 105.82156 * 9 8 7 19 19 C 1.52998 * 60.00131 * 107.48789 * 18 9 8 20 20 N 1.28717 * 108.26577 * 359.64442 * 7 6 5 21 21 N 1.28629 * 110.17754 * 0.22976 * 20 7 6 22 22 C 1.50695 * 109.47605 * 119.99869 * 2 1 3 23 23 C 1.33397 * 125.20363 * 270.00559 * 22 2 1 24 24 C 1.38422 * 114.91821 * 179.97438 * 23 22 2 25 25 C 1.33387 * 114.92628 * 359.97438 * 24 23 22 26 26 S 1.75886 * 125.20317 * 89.69199 * 22 2 1 27 27 H 1.09005 * 109.46658 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46965 * 299.99765 * 1 2 3 29 29 H 1.08995 * 109.47342 * 60.00470 * 1 2 3 30 30 H 0.96696 * 114.00042 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47138 * 299.99415 * 4 2 1 32 32 H 1.09006 * 109.46888 * 179.97438 * 4 2 1 33 33 H 1.07995 * 126.91315 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.46809 * 3.87453 * 8 7 6 35 35 H 1.08995 * 109.47313 * 243.86814 * 8 7 6 36 36 H 0.96999 * 119.99650 * 174.98962 * 13 12 10 37 37 H 1.08999 * 117.50134 * 214.98160 * 18 9 8 38 38 H 1.09003 * 117.49927 * 359.97438 * 18 9 8 39 39 H 1.09002 * 117.49886 * 252.50867 * 19 18 9 40 40 H 1.08996 * 117.49760 * 107.49150 * 19 18 9 41 41 H 1.07992 * 122.53674 * 359.97438 * 23 22 2 42 42 H 1.08002 * 122.53364 * 180.02562 * 24 23 22 43 43 H 1.08000 * 125.20519 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 6 2.2857 0.4643 -3.5028 7 7 1.4172 1.0229 -4.3771 8 6 1.7706 1.6709 -5.6427 9 6 1.0120 0.9989 -6.7888 10 6 0.8965 -0.5011 -6.7011 11 1 0.0013 -0.9511 -6.2982 12 6 1.9338 -1.2989 -7.1353 13 7 3.0848 -0.7571 -7.4692 14 14 1.7044 -3.1492 -7.2491 15 1 1.1965 -3.5029 -8.5990 16 1 3.0067 -3.8246 -7.0177 17 1 0.7281 -3.5912 -6.2214 18 6 -0.1631 1.7632 -7.4021 19 6 1.1449 1.6170 -8.1822 20 7 0.2266 0.8824 -3.9085 21 7 0.2641 0.2698 -2.7781 22 6 2.0324 -0.7103 1.2304 23 6 2.2887 -0.1289 2.4033 24 6 2.7423 -0.9850 3.3919 25 6 2.8539 -2.2617 3.0222 26 16 2.3632 -2.4342 1.3419 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 2.9702 1.4237 -0.0004 31 1 1.6767 -1.7489 -1.2492 32 1 3.1300 -0.7208 -1.2494 33 1 3.3599 0.4100 -3.6007 34 1 2.8432 1.5761 -5.8122 35 1 1.5015 2.7261 -5.5982 36 1 3.8368 -1.3227 -7.7048 37 1 -1.0197 1.1811 -7.7420 38 1 -0.3959 2.7446 -6.9887 39 1 1.7729 2.5022 -8.2822 40 1 1.1489 0.9386 -9.0353 41 1 2.1526 0.9296 2.5689 42 1 2.9865 -0.6450 4.3875 43 1 3.1909 -3.0669 3.6581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849144663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:27 Heat of formation + Delta-G solvation = 91.958239 kcal Electronic energy + Delta-G solvation = -26299.661224 eV Core-core repulsion = 22667.259448 eV Total energy + Delta-G solvation = -3632.401776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.89182 -39.94875 -38.64765 -37.70377 -34.98160 -34.07561 -33.68328 -31.97448 -29.56519 -28.58477 -28.08858 -27.45308 -25.09789 -23.07088 -22.88338 -22.75450 -21.68494 -20.93408 -20.12394 -18.78028 -18.44256 -17.45267 -17.12405 -16.86201 -16.64939 -16.19932 -15.86033 -15.72954 -15.26369 -15.17469 -14.76791 -14.50417 -13.85831 -13.78218 -13.64107 -13.42040 -13.25972 -13.07157 -13.04684 -12.99783 -12.95120 -12.87383 -12.50785 -12.31200 -12.05568 -11.96886 -11.74418 -11.60402 -11.51168 -11.07046 -10.92987 -10.69765 -10.42323 -10.04274 -9.81869 -9.56177 -9.37480 -8.20263 -6.27309 0.08234 0.71407 1.03281 1.13939 1.30251 1.34972 1.42680 1.79570 1.86979 1.89579 2.35831 3.08088 3.28639 3.41924 3.52688 3.64931 3.94735 3.98856 4.12260 4.20489 4.27021 4.31746 4.47379 4.49661 4.57427 4.62239 4.68124 4.69539 4.75296 4.84819 4.95942 4.99738 5.03054 5.17231 5.25501 5.31168 5.31935 5.41603 5.42155 5.60471 5.60897 5.69516 5.70603 6.03316 6.35956 6.74029 6.82680 7.40554 7.88591 8.87079 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.003274 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.828545 B = 8550.483733 C = 9572.861599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.225 3.775 3 O -0.553 6.553 4 C -0.050 4.050 5 C -0.029 4.029 6 C -0.044 4.044 7 N -0.244 5.244 8 C 0.157 3.843 9 C 0.006 3.994 10 C -0.498 4.498 11 H 0.027 0.973 12 C 0.048 3.952 13 N -0.890 5.890 14 Si 0.927 3.073 15 H -0.277 1.277 16 H -0.275 1.275 17 H -0.288 1.288 18 C -0.187 4.187 19 C -0.146 4.146 20 N -0.108 5.108 21 N -0.302 5.302 22 C -0.216 4.216 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.213 4.213 26 S 0.091 5.909 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.387 0.613 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.201 0.799 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 1.319 18.175 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.182 3.818 3 O -0.360 6.360 4 C -0.090 4.090 5 C -0.169 4.169 6 C -0.197 4.197 7 N -0.035 5.035 8 C 0.036 3.964 9 C 0.005 3.995 10 C -0.536 4.536 11 H 0.046 0.954 12 C -0.155 4.155 13 N -0.528 5.528 14 Si 0.754 3.246 15 H -0.202 1.202 16 H -0.200 1.200 17 H -0.214 1.214 18 C -0.224 4.224 19 C -0.184 4.184 20 N -0.087 5.087 21 N -0.167 5.167 22 C -0.334 4.334 23 C -0.155 4.155 24 C -0.172 4.172 25 C -0.348 4.348 26 S 0.354 5.646 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.237 0.763 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.218 0.782 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.164 0.836 42 H 0.179 0.821 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.260 0.475 16.760 17.081 hybrid contribution 1.625 -0.454 0.506 1.761 sum 4.885 0.021 17.266 17.943 Atomic orbital electron populations 1.21939 0.92097 1.02592 1.03394 1.19185 0.94387 0.81011 0.87248 1.86597 1.27880 1.24918 1.96606 1.20628 1.01783 0.97964 0.88599 1.21727 0.89920 1.06084 0.99163 1.23621 0.99662 1.04392 0.91978 1.47101 1.04468 1.35563 1.16360 1.21777 1.01527 0.94639 0.78464 1.18967 0.97133 0.92797 0.90607 1.20297 1.01467 0.90063 1.41737 0.95427 1.25301 0.95234 1.00706 0.94221 1.69951 1.01248 1.35850 1.45703 0.86052 0.77519 0.82892 0.78099 1.20242 1.20006 1.21410 1.23033 0.92354 1.00812 1.06197 1.22540 0.98985 1.01206 0.95640 1.78119 1.05533 1.18752 1.06249 1.74774 1.20341 1.14587 1.06984 1.25233 1.10131 0.97351 1.00670 1.20270 1.01509 1.02111 0.91631 1.20431 1.02792 0.92413 1.01594 1.26029 1.08609 1.01713 0.98444 1.84519 1.64509 1.05721 1.09836 0.91536 0.92333 0.90231 0.76333 0.90104 0.87680 0.78225 0.87818 0.88881 0.92653 0.91337 0.88789 0.88980 0.91901 0.83589 0.82100 0.79690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.44 71.98 0.61 -3.56 16 2 C 0.22 5.70 1.01 -11.54 -0.01 5.69 16 3 O -0.55 -13.91 12.08 -148.98 -1.80 -15.71 16 4 C -0.05 -1.37 4.55 29.85 0.14 -1.23 16 5 C -0.03 -1.06 6.03 41.60 0.25 -0.80 16 6 C -0.04 -1.60 11.49 83.49 0.96 -0.64 16 7 N -0.24 -10.05 2.78 -347.73 -0.97 -11.02 16 8 C 0.16 6.18 6.53 86.38 0.56 6.74 16 9 C 0.01 0.27 1.52 -52.93 -0.08 0.19 16 10 C -0.50 -26.33 8.06 25.60 0.21 -26.12 16 11 H 0.03 1.61 7.83 -2.91 -0.02 1.59 16 12 C 0.05 2.47 5.39 84.66 0.46 2.93 16 13 N -0.89 -45.69 13.09 21.45 0.28 -45.41 16 14 Si 0.93 43.00 29.55 68.60 2.03 45.02 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 18 C -0.19 -7.61 9.88 30.59 0.30 -7.31 16 19 C -0.15 -6.06 9.66 30.59 0.30 -5.76 16 20 N -0.11 -4.87 12.85 37.02 0.48 -4.39 16 21 N -0.30 -12.78 9.59 -48.60 -0.47 -13.25 16 22 C -0.22 -4.66 5.24 24.59 0.13 -4.54 16 23 C -0.12 -2.37 9.63 21.22 0.20 -2.16 16 24 C -0.14 -2.23 10.18 21.22 0.22 -2.01 16 25 C -0.21 -3.32 11.23 66.72 0.75 -2.57 16 26 S 0.09 1.79 22.09 -56.49 -1.25 0.54 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.08 2.81 5.31 -2.39 -0.01 2.80 16 30 H 0.39 6.82 9.04 -74.06 -0.67 6.15 16 31 H 0.08 2.27 7.54 -2.39 -0.02 2.25 16 32 H 0.10 2.31 8.12 -2.38 -0.02 2.29 16 33 H 0.20 5.93 8.06 -2.91 -0.02 5.91 16 34 H 0.10 4.02 8.07 -2.39 -0.02 4.00 16 35 H 0.09 3.16 7.95 -2.39 -0.02 3.14 16 36 H 0.26 13.05 8.32 -92.71 -0.77 12.28 16 37 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.09 3.34 8.08 -2.39 -0.02 3.32 16 39 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.06 2.87 8.14 -2.39 -0.02 2.86 16 41 H 0.15 2.61 7.91 -2.91 -0.02 2.59 16 42 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 43 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -63.36 375.25 3.65 -59.72 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.36 Total: 25.65 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.98 Total: -41.16 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -0.68 Total: -74.07 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.80 Total: -15.71 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.25 Total: 0.54 kcal Total: -63.36 3.65 -59.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.675 kcal (2) G-P(sol) polarization free energy of solvation -63.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds